Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Reverse (-)

7973257 .. 7974026

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGAGAAACATGATGGCCTACAGGAGCGGAGGTATACTCAAGCCTGGTGGGGTCTGACCCCTGCCAAGTCTTCCCCAGATTCAATTCTTGCGCCGCAAGTTAAGGAAGAAAACAAAGAACAAGTGAGAGCCATCGCAGAACTTGCAAAGCAATGCCTCAAGTTGAGCAGTGCAGAAAGACCAACAATGGAAGAAGTGGCCAGGGAGTTAAACAGGCTGTCGGACACTTATCTTACAGTTCATGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0030312 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0090066 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

84

Amino Acids

9.52

Weight (kDa)

6.1

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	35
AciI	CCGC	2 cut(s)	28, 95
AcoI	YGGCCR	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	84
AjnI	CCWGG	2 cut(s)	44, 200
AoxI	GGCC	2 cut(s)	16, 198
AspLEI	GCGC	1 cut(s)	94
BalI	TGGCCA	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	63
BccI	CCATC	2 cut(s)	8, 140
BciT130I	CCWGG	2 cut(s)	46, 202
BfmI	CTRYAG	1 cut(s)	20
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	46, 202
BmrFI	CCNGG	2 cut(s)	46, 202
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
BpuEI	CTTGAG	2 cut(s)	24, 143
BsaJI	CCNNGG	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bse3DI	GCAATG	1 cut(s)	158
BseBI	CCWGG	2 cut(s)	46, 202
BseDI	CCNNGG	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	18, 200
BsnI	GGCC	2 cut(s)	18, 200
BspACI	CCGC	2 cut(s)	28, 95
BspANI	GGCC	2 cut(s)	18, 200
BsrBI	CCGCTC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	201
BssNAI	GTATAC	1 cut(s)	36
Bst1107I	GTATAC	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	46, 202
Bst4CI	ACNGT	1 cut(s)	238
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	2 cut(s)	46, 202
BstSCI	CCNGG	2 cut(s)	44, 200
BstSFI	CTRYAG	1 cut(s)	20
BstV2I	GAAGAC	1 cut(s)	63
BstZ17I	GTATAC	1 cut(s)	36
BsuRI	GGCC	2 cut(s)	18, 200
BtgZI	GCGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	175
CfoI	GCGC	1 cut(s)	94
CspCI	CAANNNNNGTGG	2 cut(s)	29, 64
CviAII	CATG	2 cut(s)	11, 242
CviJI	RGCY	5 cut(s)	18, 44, 131, 200, 217
CviKI_1	RGCY	5 cut(s)	18, 44, 131, 200, 217
EaeI	YGGCCR	1 cut(s)	198
EcoRII	CCWGG	2 cut(s)	44, 200
FaeI	CATG	2 cut(s)	14, 245
FaiI	YATR	3 cut(s)	12, 36, 243
FatI	CATG	2 cut(s)	10, 241
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	95
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	18, 200
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	2 cut(s)	14, 245
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HinfI	GANTC	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	2 cut(s)	57, 223
Hpy8I	GTNNAC	1 cut(s)	36
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	146, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	14, 245
HspAI	GCGC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	8 cut(s)	8, 31, 58, 75, 90, 187, 199, 214
MbiI	CCGCTC	1 cut(s)	28
MboII	GAAGA	3 cut(s)	63, 119, 203
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	2 cut(s)	84, 247
MluNI	TGGCCA	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	2 cut(s)	24, 167
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	4 cut(s)	102, 209, 246, 250
Msp20I	TGGCCA	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	46, 202
MvaI	CCWGG	2 cut(s)	46, 202
MwoI	GCNNNNNNNGC	1 cut(s)	143
NlaIII	CATG	2 cut(s)	14, 245
PacI	TTAATTAA	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	44, 200
PspGI	CCWGG	2 cut(s)	44, 200
SaqAI	TTAA	4 cut(s)	102, 209, 246, 250
SatI	GCNGC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	46, 202
SetI	ASST	1 cut(s)	35
SfcI	CTRYAG	1 cut(s)	20
SmlI	CTYRAG	2 cut(s)	39, 158
SmoI	CTYRAG	2 cut(s)	39, 158
Sse9I	AATT	2 cut(s)	84, 247
SsiI	CCGC	2 cut(s)	28, 95
StyD4I	CCNGG	2 cut(s)	44, 200
TaaI	ACNGT	1 cut(s)	238
TasI	AATT	2 cut(s)	84, 247
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	4 cut(s)	102, 209, 246, 250
Tru9I	TTAA	4 cut(s)	102, 209, 246, 250
TscAI	CASTG	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	230
TspRI	CASTG	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.