Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Reverse (-)

28471659 .. 28472925

Gene Structure 1267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48919

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCTGAGCTACCAAGAAGATTGTGGAGATCTCAATATCACACTTCCATACCAAAATGATTTTGAGGTAGCAAAACTTTCTTCCACCCATCTAAGTGATTTAACAATCTTGGACTCTCCAAACAAGGTTACAGTCATAGGTTGTGAATACTCCTTTGATTTTGTGAGAGGGACAAACAAGGCACCACCCAACAACGACACCAACAATAGTCTGACTCATGCATCTTGTTCTAGTAGTATTGGCTGTTGCAGTTGTTCCATTCAGACCATTCCCAGAGGCTTCAGGTCTTTCTTCACTGTGGAAGAAATGAGCATTACAGGAAACACCAGTAATAAAAGATGGAATTCTTTTAGTCGGAGCGTGGAAAAGTTGCCTAAGATAGGACGAAGTTTCTTGTTTGATCACTCATTTAGCAGTGAAGCAGAAAACCTTCTTAAACGTGGTACAGTGAGAAACCCGGAAGCTTATGATGGAATTTCAAAGACAAGACGGGAATTGTACCACATTAAAAATGGTAAAGGTTCCAGACCATACATCTCAGTCTTTCCGGTAAATCTGATTCTTGGTCTTGGCTCTTGTTTCTCAATTCTTTTGTTTGTGATATCTGGGGTTTATTCGAGTGTGAAGAATCTAAGGTTTATTAAAGTCAAAACCAATTTCTTCAAGAAAAATGGAGGGATATTGCTAGAGCAGCATATTGCTTCACATGGAGATGGAATGACAACAATATTTACAGCTGAGCAGCTAGAAATAGCTACTAACTGTTACCAAAGGATTTTACGCGATAAAGTAGTGGAGGGCCAAGGCGGGAGTTTTATAAATGAGATTATCGCTCTTGCCCAAATGAGTCATGAGAATTTGGTGAAGTTCATTGGCTGCTGTTTAGAGACTGATGCTCCTATTTTGGTTTATGAACTTGCCTCTAATGGAACCCTTTTTGACTGCATTAATCACACCAATGGGAAAGTTACATTGCCTTGGAATATCCTCCTAAAGATAGCGTCAGAATCTGCAGCTGCTCTTGCTTATATTCATTCTTCTGCAGGAATTCACTCCAAACACATCATCCATGGCAATGTCAAGTCTTCTAACATATTGTTAACTGATAATTTCTGGTTTTTGGCCTTCGAGGTTGGTCCCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04330 map04330

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

381

Amino Acids

42.12

Weight (kDa)

7.56

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	259 - 370	3.6e-15	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	262 - 368	2e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	818
AccB1I	GGYRCC	1 cut(s)	181
AccII	CGCG	1 cut(s)	783
AciI	CCGC	1 cut(s)	807
AcsI	RAATTY	4 cut(s)	343, 474, 856, 1047
AcuI	CTGAAG	1 cut(s)	265
AfaI	GTAC	2 cut(s)	445, 500
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	2 cut(s)	480, 664
AluBI	AGCT	6 cut(s)	9, 464, 737, 745, 755, 1016
AluI	AGCT	6 cut(s)	9, 464, 737, 745, 755, 1016
Alw26I	GTCTC	1 cut(s)	881
AlwNI	CAGNNNCTG	1 cut(s)	1010
AoxI	GGCC	2 cut(s)	799, 1122
ApeKI	GCWGC	5 cut(s)	691, 742, 876, 1013, 1016
ApoI	RAATTY	4 cut(s)	343, 474, 856, 1047
AseI	ATTAAT	1 cut(s)	948
Asp700I	GAANNNNTTC	1 cut(s)	429
AspS9I	GGNCC	2 cut(s)	799, 1136
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	1 cut(s)	874
AvaII	GGWCC	1 cut(s)	1136
BanI	GGYRCC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	1077
BbvI	GCAGC	5 cut(s)	703, 754, 863, 1003, 1025
BccI	CCATC	4 cut(s)	96, 333, 464, 707
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	1 cut(s)	881
BfaI	CTAG	3 cut(s)	231, 686, 746
BfmI	CTRYAG	2 cut(s)	1011, 1041
BglII	AGATCT	1 cut(s)	28
BisI	GCNGC	5 cut(s)	692, 743, 877, 1014, 1017
BlpI	GCTNAGC	2 cut(s)	5, 738
BlsI	GCNGC	5 cut(s)	693, 744, 878, 1015, 1018
Bme1390I	CCNGG	1 cut(s)	458
Bme18I	GGWCC	1 cut(s)	1136
BmgT120I	GGNCC	2 cut(s)	799, 1136
BmiI	GGNNCC	4 cut(s)	183, 523, 931, 1138
BmrFI	CCNGG	1 cut(s)	458
BmsI	GCATC	2 cut(s)	230, 883
BpiI	GAAGAC	1 cut(s)	1077
Bpu1102I	GCTNAGC	2 cut(s)	5, 738
BpuMI	CCSGG	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	802, 977, 1069
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	2 cut(s)	880, 910
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	327
Bse3DI	GCAATG	2 cut(s)	971, 1081
BseDI	CCNNGG	3 cut(s)	802, 977, 1069
BseGI	GGATG	1 cut(s)	1065
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMI	GCAATG	2 cut(s)	971, 1081
BseMII	CTCAG	2 cut(s)	552, 729
BseNI	ACTGG	1 cut(s)	327
BseXI	GCAGC	5 cut(s)	703, 754, 863, 1003, 1025
Bsh1236I	CGCG	1 cut(s)	783
BshFI	GGCC	2 cut(s)	801, 1124
BshNI	GGYRCC	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	458, 548
BslFI	GGGAC	2 cut(s)	184, 1122
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	881
BsmFI	GGGAC	2 cut(s)	184, 1122
BsnI	GGCC	2 cut(s)	801, 1124
Bsp143I	GATC	2 cut(s)	28, 400
Bsp1720I	GCTNAGC	2 cut(s)	5, 738
Bsp19I	CCATGG	1 cut(s)	1069
BspACI	CCGC	1 cut(s)	807
BspANI	GGCC	2 cut(s)	801, 1124
BspCNI	CTCAG	2 cut(s)	551, 730
BspFNI	CGCG	1 cut(s)	783
BspHI	TCATGA	1 cut(s)	850
BspLI	GGNNCC	4 cut(s)	183, 523, 931, 1138
BspMAI	CTGCAG	2 cut(s)	1015, 1045
BspT107I	GGYRCC	1 cut(s)	181
BsrDI	GCAATG	2 cut(s)	971, 1081
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	3 cut(s)	802, 977, 1069
BssMI	GATC	2 cut(s)	28, 400
BssT1I	CCWWGG	3 cut(s)	802, 977, 1069
Bst4CI	ACNGT	4 cut(s)	133, 298, 448, 764
BstDEI	CTNAG	6 cut(s)	5, 92, 375, 538, 632, 738
BstDSI	CCRYGG	1 cut(s)	1069
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	1065
BstFNI	CGCG	1 cut(s)	783
BstKTI	GATC	2 cut(s)	31, 403
BstMAI	GTCTC	1 cut(s)	881
BstMBI	GATC	2 cut(s)	28, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	691, 1022
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	2 cut(s)	1011, 1041
BstUI	CGCG	1 cut(s)	783
BstV1I	GCAGC	5 cut(s)	703, 754, 863, 1003, 1025
BstV2I	GAAGAC	1 cut(s)	1077
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	801, 1124
BtgI	CCRYGG	1 cut(s)	1069
BtsCI	GGATG	1 cut(s)	1065
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	3 cut(s)	294, 421, 453
CaiI	CAGNNNCTG	1 cut(s)	1010
CciI	TCATGA	1 cut(s)	850
Cfr13I	GGNCC	2 cut(s)	799, 1136
CseI	GACGC	1 cut(s)	990
Csp6I	GTAC	2 cut(s)	444, 499
CviAII	CATG	4 cut(s)	218, 707, 851, 1070
CviQI	GTAC	2 cut(s)	444, 499
DdeI	CTNAG	6 cut(s)	5, 92, 375, 538, 632, 738
DpnI	GATC	2 cut(s)	30, 402
DpnII	GATC	2 cut(s)	28, 400
Eco130I	CCWWGG	3 cut(s)	802, 977, 1069
Eco32I	GATATC	1 cut(s)	603
Eco47I	GGWCC	1 cut(s)	1136
Eco57I	CTGAAG	1 cut(s)	265
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoRI	GAATTC	2 cut(s)	343, 1047
EcoRV	GATATC	1 cut(s)	603
EcoT14I	CCWWGG	3 cut(s)	802, 977, 1069
EcoT22I	ATGCAT	1 cut(s)	223
ErhI	CCWWGG	3 cut(s)	802, 977, 1069
FaeI	CATG	4 cut(s)	221, 710, 854, 1073
FaqI	GGGAC	2 cut(s)	184, 1122
FatI	CATG	4 cut(s)	217, 706, 850, 1069
FauI	CCCGC	1 cut(s)	800
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	5 cut(s)	692, 743, 877, 1014, 1017
FokI	GGATG	1 cut(s)	1052
Fsp4HI	GCNGC	5 cut(s)	692, 743, 877, 1014, 1017
FspBI	CTAG	3 cut(s)	231, 686, 746
GluI	GCNGC	5 cut(s)	692, 743, 877, 1014, 1017
HaeIII	GGCC	2 cut(s)	801, 1124
HapII	CCGG	2 cut(s)	458, 548
HgaI	GACGC	1 cut(s)	990
Hin1II	CATG	4 cut(s)	221, 710, 854, 1073
HincII	GTYRAC	1 cut(s)	1101
HindII	GTYRAC	1 cut(s)	1101
HindIII	AAGCTT	1 cut(s)	462
HinfI	GANTC	6 cut(s)	113, 214, 559, 628, 847, 1007
HpaI	GTTAAC	1 cut(s)	1101
HpaII	CCGG	2 cut(s)	458, 548
HphI	GGTGA	1 cut(s)	874
Hpy166II	GTNNAC	1 cut(s)	1101
Hpy188I	TCNGA	5 cut(s)	213, 264, 357, 558, 1006
Hpy188III	TCNNGA	3 cut(s)	525, 664, 851
Hpy8I	GTNNAC	1 cut(s)	1101
HpyAV	CCTTC	2 cut(s)	440, 1135
HpyCH4III	ACNGT	4 cut(s)	133, 298, 448, 764
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	5 cut(s)	221, 249, 945, 1013, 1043
HpyF10VI	GCNNNNNNNGC	2 cut(s)	691, 1022
HpyF3I	CTNAG	6 cut(s)	5, 92, 375, 538, 632, 738
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	4 cut(s)	221, 710, 854, 1073
Ksp22I	TGATCA	1 cut(s)	400
KspAI	GTTAAC	1 cut(s)	1101
Kzo9I	GATC	2 cut(s)	28, 400
LmnI	GCTCC	2 cut(s)	357, 901
Lsp1109I	GCAGC	5 cut(s)	703, 754, 863, 1003, 1025
LweI	GCATC	2 cut(s)	230, 883
MaeI	CTAG	3 cut(s)	231, 686, 746
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	3 cut(s)	127, 764, 967
MalI	GATC	2 cut(s)	30, 402
MboI	GATC	2 cut(s)	28, 400
MboII	GAAGA	8 cut(s)	29, 72, 283, 314, 637, 652, 1029, 1077
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	8 cut(s)	343, 474, 494, 585, 655, 856, 1047, 1108
MlyI	GAGTC	3 cut(s)	107, 208, 856
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	8 cut(s)	58, 161, 269, 668, 790, 931, 998, 1123
Mph1103I	ATGCAT	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	6 cut(s)	101, 435, 507, 642, 948, 1100
MslI	CAYNNNNRTG	4 cut(s)	93, 711, 957, 1074
MspA1I	CMGCKG	2 cut(s)	737, 1016
MspI	CCGG	2 cut(s)	458, 548
MspR9I	CCNGG	1 cut(s)	458
MvnI	CGCG	1 cut(s)	783
MwoI	GCNNNNNNNGC	2 cut(s)	691, 1022
NciI	CCSGG	1 cut(s)	458
NcoI	CCATGG	1 cut(s)	1069
NdeII	GATC	2 cut(s)	28, 400
NlaIII	CATG	4 cut(s)	221, 710, 854, 1073
NlaIV	GGNNCC	4 cut(s)	183, 523, 931, 1138
NsiI	ATGCAT	1 cut(s)	223
PagI	TCATGA	1 cut(s)	850
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	559, 628, 1007
PkrI	GCNGC	5 cut(s)	693, 744, 878, 1015, 1018
PleI	GAGTC	3 cut(s)	107, 208, 855
PpsI	GAGTC	3 cut(s)	107, 208, 855
PshBI	ATTAAT	1 cut(s)	948
PsiI	TTATAA	1 cut(s)	818
PspN4I	GGNNCC	4 cut(s)	183, 523, 931, 1138
PspPI	GGNCC	2 cut(s)	799, 1136
PstI	CTGCAG	2 cut(s)	1015, 1045
PstNI	CAGNNNCTG	1 cut(s)	1010
PsuI	RGATCY	1 cut(s)	28
PvuII	CAGCTG	2 cut(s)	737, 1016
RsaI	GTAC	2 cut(s)	445, 500
RsaNI	GTAC	2 cut(s)	444, 499
RseI	CAYNNNNRTG	4 cut(s)	93, 711, 957, 1074
SaqAI	TTAA	6 cut(s)	101, 435, 507, 642, 948, 1100
SatI	GCNGC	5 cut(s)	692, 743, 877, 1014, 1017
Sau3AI	GATC	2 cut(s)	28, 400
Sau96I	GGNCC	2 cut(s)	799, 1136
SchI	GAGTC	3 cut(s)	107, 208, 856
ScrFI	CCNGG	1 cut(s)	458
SfaNI	GCATC	2 cut(s)	230, 883
SfcI	CTRYAG	2 cut(s)	1011, 1041
SinI	GGWCC	1 cut(s)	1136
SmiMI	CAYNNNNRTG	4 cut(s)	93, 711, 957, 1074
Sse9I	AATT	8 cut(s)	343, 474, 494, 585, 655, 856, 1047, 1108
SsiI	CCGC	1 cut(s)	807
SspI	AATATT	1 cut(s)	729
SspMI	CTAG	3 cut(s)	231, 686, 746
StyD4I	CCNGG	1 cut(s)	456
StyI	CCWWGG	3 cut(s)	802, 977, 1069
TaaI	ACNGT	4 cut(s)	133, 298, 448, 764
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	2 cut(s)	617, 1128
TasI	AATT	8 cut(s)	343, 474, 494, 585, 655, 856, 1047, 1108
TfiI	GAWTC	3 cut(s)	559, 628, 1007
Tru1I	TTAA	6 cut(s)	101, 435, 507, 642, 948, 1100
Tru9I	TTAA	6 cut(s)	101, 435, 507, 642, 948, 1100
TscAI	CASTG	3 cut(s)	301, 421, 453
TseI	GCWGC	5 cut(s)	691, 742, 876, 1013, 1016
TspDTI	ATGAA	3 cut(s)	859, 927, 1022
TspRI	CASTG	3 cut(s)	301, 421, 453
VpaK11BI	GGWCC	1 cut(s)	1136
VspI	ATTAAT	1 cut(s)	948
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	4 cut(s)	343, 474, 856, 1047
XcmI	CCANNNNNNNNNTGG	2 cut(s)	20, 509
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	3 cut(s)	231, 686, 746
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.