Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Forward (+)

68071601 .. 68072646

Gene Structure 1046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60686

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCTTGCGTGTAACCGTGCAGGTCTTTGCATCTGTTGCTCATTTCTAGTTTTTGGGTTCACTGGGATTGTTAACAGTATTAAGAAGCAAAACTCTGTTATGCTCAAATCCGAATTCTTCAAGAAAAATGGACGGTTATTGTTAAAGCAACATATTGATGCTTCACAATATGGAAGCACAATGATATGTACAGCCGAGGAACTACAGATGGCTACTGAATTTTACAAAAAGAAACACTTCTTTGGTCCAGGAGGAGACGGCGGAAGTACTGTCTATGACAAAGGATTTTTAGTGGAGGAGCCCCAAGTGGAGCATTTTATGAATGATATTATCGCTCTTACCAAAATTGGCCATCGAAATTTGAGGACACTTGGTTATTTGGACCCAGAGTATCTTGTTACAGGCCAATTGACAGATAAAAGTGATGTGTATAGCTTTGGAGTCGTTTTGTTGGAAATTTTAACTGGGGAGATGTCGGTATGCTTTAAAAGACCTGAAAGTCAAAGAATCATGACTTCACATTTCGTATTGTCCATGGAACAAAATTGTATATCTCTGATTCTTGCGCCACAATCAGTTGTAAATGAAGGAAACAGAGAACAAGTCAGAGCAGTTGCAGAGCTTGCAAAGAGATGCCTCAAGTTGAGTAGTGCAGAAAGGCCTGCAATGGAAGAAGTGGCCAAGGAGTTAAAATTGCTATATGAAGAGTCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

238

Amino Acids

26.69

Weight (kDa)

6.53

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	121 - 228	7.2e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	125 - 230	5.3e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	498
Acc36I	ACCTGC	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	710
AciI	CCGC	1 cut(s)	261
AcoI	YGGCCR	2 cut(s)	349, 678
AcsI	RAATTY	4 cut(s)	113, 218, 358, 456
AfaI	GTAC	2 cut(s)	190, 268
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	2 cut(s)	435, 622
AluI	AGCT	2 cut(s)	435, 622
Alw26I	GTCTC	1 cut(s)	249
AoxI	GGCC	4 cut(s)	349, 403, 659, 678
ApoI	RAATTY	4 cut(s)	113, 218, 358, 456
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	2 cut(s)	245, 382
AvaII	GGWCC	2 cut(s)	245, 382
BalI	TGGCCA	2 cut(s)	351, 680
BanII	GRGCYC	1 cut(s)	303
BccI	CCATC	2 cut(s)	202, 360
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	2 cut(s)	47, 715
BfmI	CTRYAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	11
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	2 cut(s)	245, 382
BmgT120I	GGNCC	2 cut(s)	245, 382
BmiI	GGNNCC	2 cut(s)	300, 384
BmrFI	CCNGG	1 cut(s)	249
BmrI	ACTGGG	2 cut(s)	72, 474
BmsI	GCATC	3 cut(s)	39, 148, 623
BmuI	ACTGGG	2 cut(s)	72, 474
BpuEI	CTTGAG	1 cut(s)	623
BsaJI	CCNNGG	3 cut(s)	195, 534, 681
Bse1I	ACTGG	2 cut(s)	67, 469
Bse3DI	GCAATG	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	3 cut(s)	195, 534, 681
BseMI	GCAATG	1 cut(s)	672
BseNI	ACTGG	2 cut(s)	67, 469
BseRI	GAGGAG	2 cut(s)	267, 311
BsgI	GTGCAG	2 cut(s)	39, 672
BshFI	GGCC	4 cut(s)	351, 405, 661, 680
BsmAI	GTCTC	1 cut(s)	249
BsmBI	CGTCTC	1 cut(s)	249
BsnI	GGCC	4 cut(s)	351, 405, 661, 680
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp1407I	TGTACA	1 cut(s)	188
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	4 cut(s)	351, 405, 661, 680
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	300, 384
BspMI	ACCTGC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	672
BsrGI	TGTACA	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	67, 469
BssECI	CCNNGG	3 cut(s)	195, 534, 681
BssT1I	CCWWGG	2 cut(s)	534, 681
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	4 cut(s)	17, 77, 135, 271
Bst6I	CTCTTC	1 cut(s)	699
BstAPI	GCANNNNNTGC	2 cut(s)	36, 623
BstAUI	TGTACA	1 cut(s)	188
BstC8I	GCNNGC	3 cut(s)	6, 624, 663
BstDSI	CCRYGG	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	568
BstMAI	GTCTC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 623
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	203
BsuRI	GGCC	4 cut(s)	351, 405, 661, 680
BtgI	CCRYGG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	60
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	3 cut(s)	6, 624, 663
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	1 cut(s)	568
Cfr13I	GGNCC	2 cut(s)	245, 382
Csp6I	GTAC	2 cut(s)	189, 267
CviAII	CATG	2 cut(s)	511, 535
CviJI	RGCY	9 cut(s)	194, 212, 301, 351, 405, 435, 622, 661, 680
CviKI_1	RGCY	9 cut(s)	194, 212, 301, 351, 405, 435, 622, 661, 680
CviQI	GTAC	2 cut(s)	189, 267
DraI	TTTAAA	1 cut(s)	487
DrdI	GACNNNNNNGTC	1 cut(s)	498
DseDI	GACNNNNNNGTC	1 cut(s)	498
EaeI	YGGCCR	2 cut(s)	349, 678
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
EciI	GGCGGA	1 cut(s)	276
Eco130I	CCWWGG	2 cut(s)	534, 681
Eco147I	AGGCCT	1 cut(s)	661
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	245, 382
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	534, 681
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	2 cut(s)	534, 681
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	2 cut(s)	514, 538
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	2 cut(s)	510, 534
FblI	GTMKAC	1 cut(s)	710
FriOI	GRGCYC	1 cut(s)	303
FspBI	CTAG	2 cut(s)	47, 715
GlaI	GCGC	1 cut(s)	567
HaeIII	GGCC	4 cut(s)	351, 405, 661, 680
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	2 cut(s)	514, 538
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	4 cut(s)	441, 507, 559, 707
HpaI	GTTAAC	1 cut(s)	73
Hpy166II	GTNNAC	3 cut(s)	60, 73, 711
Hpy188I	TCNGA	3 cut(s)	112, 558, 608
Hpy188III	TCNNGA	2 cut(s)	121, 511
Hpy8I	GTNNAC	3 cut(s)	60, 73, 711
HpyAV	CCTTC	1 cut(s)	581
HpyCH4III	ACNGT	4 cut(s)	17, 77, 135, 271
HpyCH4V	TGCA	6 cut(s)	20, 30, 617, 626, 653, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 623
Hsp92II	CATG	2 cut(s)	514, 538
HspAI	GCGC	1 cut(s)	566
KspAI	GTTAAC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	298, 310
LpnPI	CCDG	9 cut(s)	6, 48, 234, 261, 387, 399, 450, 507, 675
LweI	GCATC	3 cut(s)	39, 148, 623
MaeI	CTAG	2 cut(s)	47, 715
MaeIII	GTNAC	2 cut(s)	11, 397
MboII	GAAGA	3 cut(s)	109, 683, 716
MfeI	CAATTG	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	2 cut(s)	351, 680
MluCI	AATT	8 cut(s)	113, 218, 345, 358, 407, 456, 544, 692
MluNI	TGGCCA	2 cut(s)	351, 680
MlyI	GAGTC	2 cut(s)	450, 716
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	5 cut(s)	190, 245, 289, 357, 647
Mox20I	TGGCCA	2 cut(s)	351, 680
MroXI	GAANNNNTTC	1 cut(s)	236
MscI	TGGCCA	2 cut(s)	351, 680
MseI	TTAA	6 cut(s)	72, 81, 143, 461, 486, 689
MslI	CAYNNNNRTG	1 cut(s)	156
Msp20I	TGGCCA	2 cut(s)	351, 680
MspR9I	CCNGG	1 cut(s)	249
MunI	CAATTG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	36, 623
NcoI	CCATGG	1 cut(s)	534
NlaIII	CATG	2 cut(s)	514, 538
NlaIV	GGNNCC	2 cut(s)	300, 384
NmeAIII	GCCGAG	1 cut(s)	220
PagI	TCATGA	1 cut(s)	510
PceI	AGGCCT	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	507, 559
PfoI	TCCNGGA	1 cut(s)	247
PleI	GAGTC	2 cut(s)	449, 715
PpsI	GAGTC	2 cut(s)	449, 715
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	300, 384
PspPI	GGNCC	2 cut(s)	245, 382
RsaI	GTAC	2 cut(s)	190, 268
RsaNI	GTAC	2 cut(s)	189, 267
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	6 cut(s)	72, 81, 143, 461, 486, 689
Sau96I	GGNCC	2 cut(s)	245, 382
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	2 cut(s)	450, 716
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	5 cut(s)	25, 437, 496, 624, 716
SfaNI	GCATC	3 cut(s)	39, 148, 623
SfcI	CTRYAG	1 cut(s)	203
SinI	GGWCC	2 cut(s)	245, 382
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	8 cut(s)	113, 218, 345, 358, 407, 456, 544, 692
SseBI	AGGCCT	1 cut(s)	661
SsiI	CCGC	1 cut(s)	261
SspMI	CTAG	2 cut(s)	47, 715
StuI	AGGCCT	1 cut(s)	661
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	2 cut(s)	534, 681
TaaI	ACNGT	4 cut(s)	17, 77, 135, 271
TaqI	TCGA	1 cut(s)	355
TasI	AATT	8 cut(s)	113, 218, 345, 358, 407, 456, 544, 692
TatI	WGTACW	2 cut(s)	188, 266
TfiI	GAWTC	2 cut(s)	507, 559
Tru1I	TTAA	6 cut(s)	72, 81, 143, 461, 486, 689
Tru9I	TTAA	6 cut(s)	72, 81, 143, 461, 486, 689
TscAI	CASTG	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	335, 600, 717
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	2 cut(s)	245, 382
XapI	RAATTY	4 cut(s)	113, 218, 358, 456
XmiI	GTMKAC	1 cut(s)	710
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	2 cut(s)	47, 715
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.