Rh2CG330900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001114
Physical Location & Seq
Reverse (-)
43277325 .. 43278157
833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG330900.1

Sequence Viewer

Length: 585 bp
ATGATCTATTGTTGGTTTAGCTTAGCTGCTTCCATATTGTTTTTGTTCACAGCGAATGCATTATCAGCCAACTCCAGCCTCAGAATTCCCTTCCCATTTGACATAAAAAGAGCAAAAGAATTTTATCTAAGCGACGGGGTTGACTTTAGGCAAAGCAAAAACAATGCTACTAATATTAACTTCTGTTTTGAGAAAGCTTTGAGTTTAGCCGGTTTAGGGTATTGGTGCAGCATCCAAGGGGATGCTTATGGCAATGAATATGGCTATGGCTTTGGGTTATATGCATATGCCTATAACTATGAAACAAAGACACTTCATCCCACTGATGTATGCCAAGCTATCGAGGAACAGGAGTGGAAGGAAGTACCCGAGTACTGTTACTATGGTGTTTGTCCACTTCGTTGGAGCTTCGATGCTTGTTCATATCGGTATGGAATTATACGATCTATACCGAAAAGATCAGGAAATCATGGTCCGTCGTTTTTTTTGGCTCCCCCTATGTATTTGCAAGTCCCTTTCATTTTAGGTATATATTTCTCTACCCTAGTTCCTATTAGTTACTTTGCTAAATATACCACTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.23

Weight (kDa)

6.7

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 84, 119
AfaI GTAC 2 cut(s) 366, 374
AfiI CCNNNNNNNGG 1 cut(s) 216
AluBI AGCT 5 cut(s) 21, 26, 197, 338, 408
AluI AGCT 5 cut(s) 21, 26, 197, 338, 408
Ama87I CYCGRG 1 cut(s) 368
ApeKI GCWGC 2 cut(s) 26, 228
ApoI RAATTY 2 cut(s) 84, 119
AspS9I GGNCC 1 cut(s) 473
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 1 cut(s) 473
BbvI GCAGC 2 cut(s) 13, 240
BfaI CTAG 1 cut(s) 545
BisI GCNGC 2 cut(s) 27, 229
BlpI GCTNAGC 1 cut(s) 22
BlsI GCNGC 2 cut(s) 28, 230
BmcAI AGTACT 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 473
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 1 cut(s) 492
BmsI GCATC 3 cut(s) 232, 240, 403
BpmI CTGGAG 1 cut(s) 58
Bpu1102I GCTNAGC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse118I RCCGGY 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 3 cut(s) 231, 247, 316
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 13, 240
BsgI GTGCAG 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 497
BsmI GAATGC 1 cut(s) 61
BsoBI CYCGRG 1 cut(s) 368
Bsp143I GATC 3 cut(s) 3, 443, 458
Bsp1720I GCTNAGC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 492
BsrDI GCAATG 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 3 cut(s) 3, 443, 458
BssT1I CCWWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 377
BstDEI CTNAG 4 cut(s) 22, 80, 128, 582
BstF5I GGATG 3 cut(s) 231, 247, 316
BstKTI GATC 3 cut(s) 6, 446, 461
BstMBI GATC 3 cut(s) 3, 443, 458
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 13, 240
BstXI CCANNNNNNTGG 1 cut(s) 402
BtsCI GGATG 3 cut(s) 231, 247, 316
BtsIMutI CAGTG 1 cut(s) 321
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 473
Csp6I GTAC 2 cut(s) 365, 373
CviAII CATG 1 cut(s) 470
CviQI GTAC 2 cut(s) 365, 373
DdeI CTNAG 4 cut(s) 22, 80, 128, 582
DpnI GATC 3 cut(s) 5, 445, 460
DpnII GATC 3 cut(s) 3, 443, 458
Eco130I CCWWGG 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 473
Eco88I CYCGRG 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 235
EcoT22I ATGCAT 2 cut(s) 61, 286
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 1 cut(s) 473
FaqI GGGAC 1 cut(s) 497
FatI CATG 1 cut(s) 469
FauNDI CATATG 1 cut(s) 286
Fnu4HI GCNGC 2 cut(s) 27, 229
FokI GGATG 3 cut(s) 218, 254, 303
Fsp4HI GCNGC 2 cut(s) 27, 229
FspBI CTAG 1 cut(s) 545
GluI GCNGC 2 cut(s) 27, 229
GsuI CTGGAG 1 cut(s) 58
HapII CCGG 1 cut(s) 210
Hin1II CATG 1 cut(s) 473
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 195
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 3 cut(s) 48, 142, 395
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 462
Hpy8I GTNNAC 3 cut(s) 48, 142, 395
Hpy99I CGWCG 2 cut(s) 137, 481
HpyAV CCTTC 2 cut(s) 100, 352
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4V TGCA 4 cut(s) 59, 228, 284, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 4 cut(s) 22, 80, 128, 582
Hsp92II CATG 1 cut(s) 473
Kzo9I GATC 3 cut(s) 3, 443, 458
LmnI GCTCC 2 cut(s) 405, 496
LpnPI CCDG 4 cut(s) 88, 223, 335, 447
Lsp1109I GCAGC 2 cut(s) 13, 240
LweI GCATC 3 cut(s) 232, 240, 403
MaeI CTAG 1 cut(s) 545
MaeIII GTNAC 2 cut(s) 377, 557
MalI GATC 3 cut(s) 5, 445, 460
MboI GATC 3 cut(s) 3, 443, 458
MluCI AATT 3 cut(s) 84, 119, 435
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 2 cut(s) 89, 337
Mph1103I ATGCAT 2 cut(s) 61, 286
MseI TTAA 1 cut(s) 177
MspI CCGG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeI CATATG 1 cut(s) 286
NdeII GATC 3 cut(s) 3, 443, 458
NlaIII CATG 1 cut(s) 473
NlaIV GGNNCC 1 cut(s) 492
NsiI ATGCAT 2 cut(s) 61, 286
PctI GAATGC 1 cut(s) 61
PkrI GCNGC 2 cut(s) 28, 230
PspN4I GGNNCC 1 cut(s) 492
PspPI GGNCC 1 cut(s) 473
RsaI GTAC 2 cut(s) 366, 374
RsaNI GTAC 2 cut(s) 365, 373
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 2 cut(s) 27, 229
Sau3AI GATC 3 cut(s) 3, 443, 458
Sau96I GGNCC 1 cut(s) 473
ScaI AGTACT 1 cut(s) 374
SetI ASST 6 cut(s) 23, 28, 199, 340, 410, 529
SfaNI GCATC 3 cut(s) 232, 240, 403
SinI GGWCC 1 cut(s) 473
Sse9I AATT 3 cut(s) 84, 119, 435
SspI AATATT 1 cut(s) 175
SspMI CTAG 1 cut(s) 545
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 377
TaqI TCGA 2 cut(s) 342, 411
TasI AATT 3 cut(s) 84, 119, 435
TatI WGTACW 1 cut(s) 372
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 328
TseI GCWGC 2 cut(s) 26, 228
TspDTI ATGAA 5 cut(s) 270, 305, 315, 411, 508
TspGWI ACGGA 1 cut(s) 465
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 473
XapI RAATTY 2 cut(s) 84, 119
XspI CTAG 1 cut(s) 545
ZrmI AGTACT 1 cut(s) 374
Zsp2I ATGCAT 2 cut(s) 61, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.