Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Forward (+)

45801824 .. 45803095

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGAATTACAAAATGGCCTTCTTCAGAGTCTTGCACCACAAGTTAAGGAGGCAAACAAAGAACAAGTCACAGCAGTTGCAGAACTTCCAAAACGATGCATCGATGGGGAAGCCTTTCACAAGAAATGGCATCAGTGTAAGAACCTCAATTCAATCGCAGTCATAATGGCATTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0030312 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0090066 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

59

Amino Acids

6.6

Weight (kDa)

6.71

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	8
AgsI	TTSAA	1 cut(s)	153
AoxI	GGCC	1 cut(s)	16
ArsI	GACNNNNNNTTYG	2 cut(s)	51, 83
Asp700I	GAANNNNTTC	1 cut(s)	114
BccI	CCATC	1 cut(s)	98
BmsI	GCATC	3 cut(s)	86, 108, 139
Bsa29I	ATCGAT	1 cut(s)	102
BseCI	ATCGAT	1 cut(s)	102
BshFI	GGCC	1 cut(s)	18
BshVI	ATCGAT	1 cut(s)	102
BsnI	GGCC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	18
BspDI	ATCGAT	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	18
BsuTUI	ATCGAT	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	140
ClaI	ATCGAT	1 cut(s)	102
CviJI	RGCY	2 cut(s)	18, 113
CviKI_1	RGCY	2 cut(s)	18, 113
Eco57I	CTGAAG	1 cut(s)	8
EcoT22I	ATGCAT	1 cut(s)	101
FaiI	YATR	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	29
HpyCH4V	TGCA	3 cut(s)	35, 80, 99
LweI	GCATC	3 cut(s)	86, 108, 139
MaeIII	GTNAC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	14
MluCI	AATT	2 cut(s)	5, 148
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	2 cut(s)	43, 155
Mph1103I	ATGCAT	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	2 cut(s)	45, 178
NmuCI	GTSAC	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	114
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	45, 178
SchI	GAGTC	1 cut(s)	37
SetI	ASST	1 cut(s)	147
SfaNI	GCATC	3 cut(s)	86, 108, 139
SgeI	CNNG	4 cut(s)	44, 53, 77, 133
Sse9I	AATT	2 cut(s)	5, 148
TaqI	TCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	5, 148
Tru1I	TTAA	2 cut(s)	45, 178
Tru9I	TTAA	2 cut(s)	45, 178
TscAI	CASTG	1 cut(s)	140
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspRI	CASTG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	114
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.