Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Reverse (-)

27454046 .. 27454767

Gene Structure 722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018239

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTACTAACTGTTACCAAAGAATTTTACGCGATAAAGTAGCGGAGGGCCAAGTCGGGAGTTTTATAAATGAGATTATCGCTCTTGCCCAAATGAGTCATGAGAATTTGGTGAAGTTCATTGGCTGCTGTTTAGAGACTGATGCTCCTATTTTGGTTTATGAACTTGCCTCTAATGGAACCCTTTTCGACTGCATTAATCACACCAATGGGAAAGTTACATTGTCCTTGGAATATCCTCCTAAAGATAGCCTCAGAATCTGCAGCTGCTCTTGGTTAGTCCCTGCCAATGAATCTCAGATGGGCACATTGCTTCTAAGGACACTAGGTTGTATGGACCCAGGGTATCTTTGCACAGGCCAACTGACAGATAAGAGTGATGTTTATAGCTTTGGAGTCATTTTGGTAGAGATCTTAAACCGGGAAAAGCCTATTTCATTTGACAGACCAGAAAGTCAGAGAATCATTGCTTCTCATTTTGTTTCATCCATTGAATTAAAAGATGGTTTCTTTCATGTTGTTGATCCACAAGTTTTAAACGAGGGAAATCGAGAACAAGAGCAGTTGCAGAGCTTGCAAAGAGATGCCTCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

199

Amino Acids

22.1

Weight (kDa)

4.88

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	9 - 75	1.5e-08	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	13 - 69	3.6e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	68
AasI	GACNNNNNNGTC	1 cut(s)	453
AccII	CGCG	1 cut(s)	33
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	1 cut(s)	518
AcsI	RAATTY	2 cut(s)	24, 106
AgsI	TTSAA	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	3 cut(s)	267, 390, 573
AluI	AGCT	3 cut(s)	267, 390, 573
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	518
AlwNI	CAGNNNCTG	1 cut(s)	261
AoxI	GGCC	2 cut(s)	49, 358
ApeKI	GCWGC	3 cut(s)	126, 264, 267
ApoI	RAATTY	2 cut(s)	24, 106
AseI	ATTAAT	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	49, 337
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	113, 254, 276
BccI	CCATC	2 cut(s)	295, 497
BciT130I	CCWGG	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	262
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	3 cut(s)	127, 265, 268
BlsI	GCNGC	3 cut(s)	128, 266, 269
Bme1390I	CCNGG	2 cut(s)	342, 422
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	2 cut(s)	49, 337
BmiI	GGNNCC	2 cut(s)	181, 339
BmrFI	CCNGG	2 cut(s)	342, 422
BmsI	GCATC	2 cut(s)	133, 574
BpuMI	CCSGG	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	228, 340, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bse3DI	GCAATG	2 cut(s)	308, 465
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	3 cut(s)	228, 340, 341
BseGI	GGATG	1 cut(s)	485
BseMI	GCAATG	2 cut(s)	308, 465
BseMII	CTCAG	2 cut(s)	268, 311
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	3 cut(s)	113, 254, 276
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	51, 360
BsiSI	CCGG	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	51, 360
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	2 cut(s)	411, 523
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	2 cut(s)	51, 360
BspCNI	CTCAG	2 cut(s)	267, 310
BspFNI	CGCG	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	181, 339
BspMAI	CTGCAG	1 cut(s)	266
BspPI	GGATC	1 cut(s)	518
BsrDI	GCAATG	2 cut(s)	308, 465
BssECI	CCNNGG	3 cut(s)	228, 340, 341
BssMI	GATC	2 cut(s)	411, 523
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	574
BstC8I	GCNNGC	1 cut(s)	575
BstDEI	CTNAG	3 cut(s)	254, 297, 317
BstF5I	GGATG	1 cut(s)	485
BstFNI	CGCG	1 cut(s)	33
BstKTI	GATC	2 cut(s)	414, 526
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	411, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	574
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	2 cut(s)	340, 420
BstSFI	CTRYAG	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	308
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	3 cut(s)	113, 254, 276
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	51, 360
BtsCI	GGATG	1 cut(s)	485
Cac8I	GCNNGC	1 cut(s)	575
CaiI	CAGNNNCTG	1 cut(s)	261
CciI	TCATGA	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	49, 337
CviAII	CATG	2 cut(s)	101, 515
CviJI	RGCY	9 cut(s)	5, 51, 126, 252, 267, 360, 390, 430, 573
CviKI_1	RGCY	9 cut(s)	5, 51, 126, 252, 267, 360, 390, 430, 573
DdeI	CTNAG	3 cut(s)	254, 297, 317
DpnI	GATC	2 cut(s)	413, 525
DpnII	GATC	2 cut(s)	411, 523
DraI	TTTAAA	1 cut(s)	537
DrdI	GACNNNNNNGTC	1 cut(s)	453
DseDI	GACNNNNNNGTC	1 cut(s)	453
Eco130I	CCWWGG	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	104, 518
FaiI	YATR	6 cut(s)	68, 102, 162, 335, 387, 516
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	2 cut(s)	100, 514
Fnu4HI	GCNGC	3 cut(s)	127, 265, 268
FokI	GGATG	1 cut(s)	472
Fsp4HI	GCNGC	3 cut(s)	127, 265, 268
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	3 cut(s)	127, 265, 268
HaeIII	GGCC	2 cut(s)	51, 360
HapII	CCGG	1 cut(s)	421
Hin1II	CATG	2 cut(s)	104, 518
HinfI	GANTC	5 cut(s)	97, 258, 293, 396, 462
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	4 cut(s)	257, 300, 459, 596
Hpy188III	TCNNGA	3 cut(s)	58, 101, 551
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	5 cut(s)	195, 264, 354, 568, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	574
HpyF3I	CTNAG	3 cut(s)	254, 297, 317
Hsp92II	CATG	2 cut(s)	104, 518
Kzo9I	GATC	2 cut(s)	411, 523
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	6 cut(s)	297, 327, 342, 354, 434, 462
Lsp1109I	GCAGC	3 cut(s)	113, 254, 276
LweI	GCATC	2 cut(s)	133, 574
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	2 cut(s)	14, 217
MalI	GATC	2 cut(s)	413, 525
MboI	GATC	2 cut(s)	411, 523
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	3 cut(s)	24, 106, 494
MlyI	GAGTC	2 cut(s)	106, 405
MnlI	CCTC	5 cut(s)	40, 181, 249, 263, 535
MseI	TTAA	4 cut(s)	198, 416, 497, 536
MslI	CAYNNNNRTG	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	2 cut(s)	342, 422
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	574
NciI	CCSGG	1 cut(s)	422
NdeII	GATC	2 cut(s)	411, 523
NlaIII	CATG	2 cut(s)	104, 518
NlaIV	GGNNCC	2 cut(s)	181, 339
PagI	TCATGA	1 cut(s)	100
PasI	CCCWGGG	1 cut(s)	341
PfeI	GAWTC	3 cut(s)	258, 293, 462
PkrI	GCNGC	3 cut(s)	128, 266, 269
PleI	GAGTC	2 cut(s)	105, 404
PpsI	GAGTC	2 cut(s)	105, 404
PshBI	ATTAAT	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	181, 339
PspPI	GGNCC	2 cut(s)	49, 337
PstI	CTGCAG	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	411
PvuII	CAGCTG	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	4 cut(s)	198, 416, 497, 536
SatI	GCNGC	3 cut(s)	127, 265, 268
Sau3AI	GATC	2 cut(s)	411, 523
Sau96I	GGNCC	2 cut(s)	49, 337
SchI	GAGTC	2 cut(s)	106, 405
ScrFI	CCNGG	2 cut(s)	342, 422
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	4 cut(s)	269, 331, 392, 575
SfaNI	GCATC	2 cut(s)	133, 574
SfcI	CTRYAG	1 cut(s)	262
SinI	GGWCC	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	207
Sse9I	AATT	3 cut(s)	24, 106, 494
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	2 cut(s)	340, 420
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	2 cut(s)	189, 550
TasI	AATT	3 cut(s)	24, 106, 494
TfiI	GAWTC	3 cut(s)	258, 293, 462
Tru1I	TTAA	4 cut(s)	198, 416, 497, 536
Tru9I	TTAA	4 cut(s)	198, 416, 497, 536
TseI	GCWGC	3 cut(s)	126, 264, 267
TspDTI	ATGAA	6 cut(s)	109, 177, 306, 426, 474, 503
VpaK11BI	GGWCC	1 cut(s)	337
VspI	ATTAAT	1 cut(s)	198
XapI	RAATTY	2 cut(s)	24, 106
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.