Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Forward (+)

16510805 .. 16511503

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1077200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTTAGTCTATGAACTCGCCTGCAACGGGACCTTATTCAACTACATTCATCATGCTAACGGGAAGAGTTCATTGCCTTGGCACGTCCTTTTGAAGATAGCCTCAGAATCTGCCGCTGCTCTTGCCTATCTGCATTCTGCAGCAGACTCATCAAAAACAATGATCATTCGTGGAATTGTCAACTCTTCCAACATATTATTGAGCGATTGTTTCACGGCCAAAGTCTCCGGTATTGGACCTTCAAGGTTGGTCCCAATCCCTAGTAATGAATCCCAGATAACTACATTGGTACAGCAGACGGTTGGTTATTTAGACCCCGAATATCTAAGTACGGGCCAGTTGACAGATAAGAGTGATGTTTATAGCTTTGGAGTCGTCTTGTTAGAAATTTTGACGGGAGAGAAGCCATTGTCTTTTGACAGACCCGAAAATCGAAGAATCATAACATCCCATTTCGTTTCATCTGTGGAACAAAATGGCCTGTTTCAGATCGTTGTGTCGCAACTTGTAAATGAGGGAAACAGAGAACAGCTCAGAGCTGTTGCAGAGCTTGCAAAGCGCTGCCTCAAGTTGAGTAGTACCGAAAGGCCCACGATGGAAGAAGTGGCAGGGGAATTAAGGAGGCTGTGTGACAGCACGCATAATATAGCCCCGTGGCTCAATCCCGCTTGCTGTGAAGCATGCCTAGCTCCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

233

Amino Acids

25.33

Weight (kDa)

5.87

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 205	1.5e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 202	3.8e-18	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	114, 666
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	387
AfaI	GTAC	3 cut(s)	291, 331, 580
AfeI	AGCGCT	1 cut(s)	560
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	40, 94, 243
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	691
AluBI	AGCT	5 cut(s)	366, 532, 539, 550, 689
AluI	AGCT	5 cut(s)	366, 532, 539, 550, 689
Alw26I	GTCTC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	560
AoxI	GGCC	4 cut(s)	216, 334, 478, 587
ApeKI	GCWGC	3 cut(s)	116, 140, 561
ApoI	RAATTY	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	561
AspS9I	GGNCC	5 cut(s)	30, 236, 250, 334, 588
AvaII	GGWCC	3 cut(s)	30, 236, 250
BarI	GAAGNNNNNNTAC	2 cut(s)	223, 255
BbvI	GCAGC	3 cut(s)	103, 152, 548
BccI	CCATC	1 cut(s)	589
BceAI	ACGGC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	693
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	2 cut(s)	261, 686
BfmI	CTRYAG	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	562
BisI	GCNGC	4 cut(s)	114, 117, 141, 562
BlsI	GCNGC	4 cut(s)	115, 118, 142, 563
Bme1390I	CCNGG	1 cut(s)	693
Bme18I	GGWCC	3 cut(s)	30, 236, 250
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	5 cut(s)	30, 236, 250, 334, 588
BmiI	GGNNCC	2 cut(s)	31, 252
BmrFI	CCNGG	1 cut(s)	693
BplI	GAGNNNNNCTC	2 cut(s)	516, 548
BpuEI	CTTGAG	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	77, 653
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	693
BseDI	CCNNGG	2 cut(s)	77, 653
BseGI	GGATG	1 cut(s)	446
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	71
BseMII	CTCAG	2 cut(s)	117, 547
BseNI	ACTGG	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	103, 152, 548
BshFI	GGCC	4 cut(s)	218, 336, 480, 589
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	2 cut(s)	43, 236
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	2 cut(s)	43, 236
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	4 cut(s)	218, 336, 480, 589
Bsp143I	GATC	2 cut(s)	162, 489
BspACI	CCGC	2 cut(s)	114, 666
BspANI	GGCC	4 cut(s)	218, 336, 480, 589
BspCNI	CTCAG	2 cut(s)	116, 546
BspLI	GGNNCC	2 cut(s)	31, 252
BspMAI	CTGCAG	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	77, 653
BssMI	GATC	2 cut(s)	162, 489
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	2 cut(s)	59, 190
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstC8I	GCNNGC	5 cut(s)	22, 552, 638, 670, 682
BstDEI	CTNAG	3 cut(s)	103, 326, 533
BstDSI	CCRYGG	1 cut(s)	653
BstF5I	GGATG	1 cut(s)	446
BstH2I	RGCGCY	1 cut(s)	562
BstHHI	GCGC	1 cut(s)	561
BstKTI	GATC	2 cut(s)	165, 492
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	2 cut(s)	162, 489
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 551, 556, 686
BstNI	CCWGG	1 cut(s)	693
BstNSI	RCATGY	1 cut(s)	684
BstSCI	CCNGG	1 cut(s)	691
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	103, 152, 548
BsuRI	GGCC	4 cut(s)	218, 336, 480, 589
BtgI	CCRYGG	1 cut(s)	653
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	446
Cac8I	GCNNGC	5 cut(s)	22, 552, 638, 670, 682
CaiI	CAGNNNCTG	1 cut(s)	110
CfoI	GCGC	1 cut(s)	561
Cfr13I	GGNCC	5 cut(s)	30, 236, 250, 334, 588
Csp6I	GTAC	3 cut(s)	290, 330, 579
CviAII	CATG	2 cut(s)	53, 681
CviQI	GTAC	3 cut(s)	290, 330, 579
DdeI	CTNAG	3 cut(s)	103, 326, 533
DpnI	GATC	2 cut(s)	164, 491
DpnII	GATC	2 cut(s)	162, 489
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	59, 190
EarI	CTCTTC	2 cut(s)	59, 190
Eco130I	CCWWGG	1 cut(s)	77
Eco47I	GGWCC	3 cut(s)	30, 236, 250
Eco47III	AGCGCT	1 cut(s)	560
EcoO109I	RGGNCCY	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	2 cut(s)	56, 684
FaiI	YATR	8 cut(s)	12, 54, 194, 363, 443, 642, 647, 682
FaqI	GGGAC	2 cut(s)	43, 236
FatI	CATG	2 cut(s)	52, 680
FauI	CCCGC	1 cut(s)	673
FbaI	TGATCA	1 cut(s)	162
Fnu4HI	GCNGC	4 cut(s)	114, 117, 141, 562
FokI	GGATG	1 cut(s)	433
Fsp4HI	GCNGC	4 cut(s)	114, 117, 141, 562
FspBI	CTAG	2 cut(s)	261, 686
GlaI	GCGC	1 cut(s)	560
GluI	GCNGC	4 cut(s)	114, 117, 141, 562
HaeII	RGCGCY	1 cut(s)	562
HaeIII	GGCC	4 cut(s)	218, 336, 480, 589
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	1 cut(s)	561
Hin1II	CATG	2 cut(s)	56, 684
Hin6I	GCGC	1 cut(s)	559
HinP1I	GCGC	1 cut(s)	559
HincII	GTYRAC	2 cut(s)	181, 342
HindII	GTYRAC	2 cut(s)	181, 342
HinfI	GANTC	5 cut(s)	107, 146, 269, 372, 438
HpaII	CCGG	1 cut(s)	228
Hpy166II	GTNNAC	2 cut(s)	181, 342
Hpy188I	TCNGA	3 cut(s)	106, 489, 536
Hpy8I	GTNNAC	2 cut(s)	181, 342
HpyAV	CCTTC	1 cut(s)	249
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	5 cut(s)	24, 133, 140, 545, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 551, 556, 686
HpyF3I	CTNAG	3 cut(s)	103, 326, 533
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	56, 684
HspAI	GCGC	1 cut(s)	559
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	162, 489
LmnI	GCTCC	1 cut(s)	694
LpnPI	CCDG	7 cut(s)	34, 241, 287, 350, 494, 594, 678
Lsp1109I	GCAGC	3 cut(s)	103, 152, 548
MaeI	CTAG	2 cut(s)	261, 686
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	2 cut(s)	164, 491
MboI	GATC	2 cut(s)	162, 489
MboII	GAAGA	5 cut(s)	76, 106, 177, 447, 611
MluCI	AATT	3 cut(s)	174, 387, 614
MlyI	GAGTC	2 cut(s)	140, 381
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	112, 508, 575, 615
MseI	TTAA	1 cut(s)	617
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	693
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	693
MwoI	GCNNNNNNNGC	4 cut(s)	122, 551, 556, 686
NdeII	GATC	2 cut(s)	162, 489
NlaIII	CATG	2 cut(s)	56, 684
NlaIV	GGNNCC	2 cut(s)	31, 252
NmuCI	GTSAC	1 cut(s)	629
NspI	RCATGY	1 cut(s)	684
PaeI	GCATGC	1 cut(s)	684
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	3 cut(s)	107, 269, 438
PkrI	GCNGC	4 cut(s)	115, 118, 142, 563
PleI	GAGTC	2 cut(s)	140, 380
PpsI	GAGTC	2 cut(s)	140, 380
PpuMI	RGGWCCY	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	2 cut(s)	31, 252
PspPI	GGNCC	5 cut(s)	30, 236, 250, 334, 588
PspPPI	RGGWCCY	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	3 cut(s)	291, 331, 580
RsaNI	GTAC	3 cut(s)	290, 330, 579
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	4 cut(s)	114, 117, 141, 562
Sau3AI	GATC	2 cut(s)	162, 489
Sau96I	GGNCC	5 cut(s)	30, 236, 250, 334, 588
SchI	GAGTC	2 cut(s)	140, 381
ScrFI	CCNGG	1 cut(s)	693
SetI	ASST	9 cut(s)	35, 87, 241, 248, 368, 534, 541, 552, 691
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	3 cut(s)	30, 236, 250
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SphI	GCATGC	1 cut(s)	684
Sse9I	AATT	3 cut(s)	174, 387, 614
SsiI	CCGC	2 cut(s)	114, 666
SspMI	CTAG	2 cut(s)	261, 686
StyD4I	CCNGG	1 cut(s)	691
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	433
TasI	AATT	3 cut(s)	174, 387, 614
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	3 cut(s)	107, 269, 438
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TseFI	GTSAC	1 cut(s)	629
TseI	GCWGC	3 cut(s)	116, 140, 561
Tsp45I	GTSAC	1 cut(s)	629
TspDTI	ATGAA	5 cut(s)	27, 38, 60, 282, 450
VpaK11BI	GGWCC	3 cut(s)	30, 236, 250
XapI	RAATTY	1 cut(s)	387
XceI	RCATGY	1 cut(s)	684
XspI	CTAG	2 cut(s)	261, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.