Rh2AG343700

Wall-associated receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001114
Physical Location & Seq
Reverse (-)
50513846 .. 50515440
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG343700.1

Sequence Viewer

Length: 843 bp
ATGCTCTCTTGGTTTACCTTAACTTCTATCTTGCTTTTGTTTACAGCAATTCCATTACAAGTCAATACCAACCAAAAAGAATGTGGAGATCTCAATCTCACAATTCCTTTTAATTTCGGCACTATTGGAGAAGGAAGTGGATCTTCTCTAGGTAACCACTGGCTTGACAAATTATGTAGCAGCACTAATCTTGAGGCAGAGATACAAGCTTCTTCATCTACCAAGGTACGCGTAAATAACTCCATTTACGCTTATAGTAATTACCTCTGCTACACCGGAGCTGGAGCAAAGATGTTGCACTCTAACAAGGTCCAGGCTGCAATGACTTTGACAGATGGCCGCCAGATGGTTACAACCTCCAACACTAATGCAAATAACTTTATAGTCATAGGTTATGAACCATTTGGTTTTATAGGTTATGAACCATTAACTTTGAACATCAATAGCTCTCTGGCTGATCAGGAGGATGGGGCTTGTTCTGGTATTGGCTGTGGCCATTCCTCCATTCCAAGAGGCATCGGGTACTTTTTTCCCAGGGAGGCAGAGAGTATGGTAAACATAACTTTATTATCCATGTATTTTTGGTTTACCATGAGACTTTGTGTTACTGGTACACCATCCAAGTCCAGCCTCATCTTTCCTTTGTCCATGGTAGCAAACATCAGTAGTGCGCGACACCCATACTATGAAAAACTAGCTGTCTTTCACAACTGTGATAACCGATCTGTACGTTCACTCATCGAAGTTGGCACACATGATAAATTGGCATACCACATGAAAAGTGGTAGAGGTTACCTTCCAAACAGCGAAGTCTTTCGGGCAAATTTTACTCTAGGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EGF EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

280

Amino Acids

30.78

Weight (kDa)

7.61

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 231, 673
AciI CCGC 1 cut(s) 340
AclWI GGATC 1 cut(s) 148
AcoI YGGCCR 2 cut(s) 337, 493
AcsI RAATTY 1 cut(s) 823
AfaI GTAC 4 cut(s) 228, 524, 613, 729
AfiI CCNNNNNNNGG 1 cut(s) 346
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 1 cut(s) 436
AjnI CCWGG 2 cut(s) 312, 533
AleI CACNNNNGTG 1 cut(s) 711
AluBI AGCT 4 cut(s) 209, 281, 447, 698
AluI AGCT 4 cut(s) 209, 281, 447, 698
Alw26I GTCTC 1 cut(s) 589
AlwI GGATC 1 cut(s) 148
AoxI GGCC 2 cut(s) 337, 493
ApeKI GCWGC 2 cut(s) 180, 317
ApoI RAATTY 1 cut(s) 823
Asp700I GAANNNNTTC 1 cut(s) 813
AspLEI GCGC 1 cut(s) 673
AspS9I GGNCC 1 cut(s) 310
AvaII GGWCC 1 cut(s) 310
BalI TGGCCA 1 cut(s) 495
BbvI GCAGC 2 cut(s) 192, 304
BccI CCATC 4 cut(s) 329, 340, 461, 625
BciT130I CCWGG 2 cut(s) 314, 535
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 1 cut(s) 589
BfaI CTAG 3 cut(s) 149, 695, 833
BglII AGATCT 1 cut(s) 88
BisI GCNGC 3 cut(s) 181, 318, 340
BlsI GCNGC 3 cut(s) 182, 319, 341
Bme1390I CCNGG 2 cut(s) 314, 535
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmrFI CCNGG 2 cut(s) 314, 535
BmsI GCATC 1 cut(s) 525
BpmI CTGGAG 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 93
BsaJI CCNNGG 4 cut(s) 222, 533, 534, 648
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse1I ACTGG 2 cut(s) 164, 613
Bse3DI GCAATG 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 2 cut(s) 314, 535
BseDI CCNNGG 4 cut(s) 222, 533, 534, 648
BseGI GGATG 2 cut(s) 472, 617
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMI GCAATG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 164, 613
BseXI GCAGC 2 cut(s) 192, 304
Bsh1236I CGCG 2 cut(s) 231, 673
BshFI GGCC 2 cut(s) 339, 495
BsiSI CCGG 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 589
BsnI GGCC 2 cut(s) 339, 495
Bsp143I GATC 4 cut(s) 88, 140, 457, 722
Bsp19I CCATGG 1 cut(s) 648
BspACI CCGC 1 cut(s) 340
BspANI GGCC 2 cut(s) 339, 495
BspFNI CGCG 2 cut(s) 231, 673
BspPI GGATC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 327
BsrI ACTGG 2 cut(s) 164, 613
BssECI CCNNGG 4 cut(s) 222, 533, 534, 648
BssMI GATC 4 cut(s) 88, 140, 457, 722
BssT1I CCWWGG 2 cut(s) 222, 648
Bst2UI CCWGG 2 cut(s) 314, 535
Bst4CI ACNGT 1 cut(s) 713
BstDSI CCRYGG 1 cut(s) 648
BstEII GGTNACC 2 cut(s) 152, 791
BstF5I GGATG 2 cut(s) 472, 617
BstFNI CGCG 2 cut(s) 231, 673
BstHHI GCGC 1 cut(s) 673
BstKTI GATC 4 cut(s) 91, 143, 460, 725
BstMAI GTCTC 1 cut(s) 589
BstMBI GATC 4 cut(s) 88, 140, 457, 722
BstNI CCWGG 2 cut(s) 314, 535
BstPI GGTNACC 2 cut(s) 152, 791
BstSCI CCNGG 2 cut(s) 312, 533
BstUI CGCG 2 cut(s) 231, 673
BstV1I GCAGC 2 cut(s) 192, 304
BstX2I RGATCY 2 cut(s) 88, 140
BstYI RGATCY 2 cut(s) 88, 140
BsuRI GGCC 2 cut(s) 339, 495
BtgI CCRYGG 1 cut(s) 648
BtsCI GGATG 2 cut(s) 472, 617
BtsIMutI CAGTG 1 cut(s) 157
CfoI GCGC 1 cut(s) 673
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 4 cut(s) 227, 523, 612, 728
CviAII CATG 5 cut(s) 574, 592, 649, 755, 775
CviQI GTAC 4 cut(s) 227, 523, 612, 728
DpnI GATC 4 cut(s) 90, 142, 459, 724
DpnII GATC 4 cut(s) 88, 140, 457, 722
EaeI YGGCCR 2 cut(s) 337, 493
Eco130I CCWWGG 2 cut(s) 222, 648
Eco47I GGWCC 1 cut(s) 310
Eco91I GGTNACC 2 cut(s) 152, 791
EcoO65I GGTNACC 2 cut(s) 152, 791
EcoRII CCWGG 2 cut(s) 312, 533
EcoT14I CCWWGG 2 cut(s) 222, 648
ErhI CCWWGG 2 cut(s) 222, 648
FaeI CATG 5 cut(s) 577, 595, 652, 758, 778
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FatI CATG 5 cut(s) 573, 591, 648, 754, 774
FbaI TGATCA 1 cut(s) 457
Fnu4HI GCNGC 3 cut(s) 181, 318, 340
FokI GGATG 2 cut(s) 479, 604
Fsp4HI GCNGC 3 cut(s) 181, 318, 340
FspBI CTAG 3 cut(s) 149, 695, 833
GlaI GCGC 1 cut(s) 672
GluI GCNGC 3 cut(s) 181, 318, 340
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 2 cut(s) 339, 495
HapII CCGG 1 cut(s) 276
HhaI GCGC 1 cut(s) 673
Hin1II CATG 5 cut(s) 577, 595, 652, 758, 778
Hin6I GCGC 1 cut(s) 671
HinP1I GCGC 1 cut(s) 671
HindIII AAGCTT 1 cut(s) 207
HpaII CCGG 1 cut(s) 276
Hpy166II GTNNAC 6 cut(s) 15, 42, 556, 588, 614, 734
Hpy188III TCNNGA 2 cut(s) 191, 461
Hpy8I GTNNAC 6 cut(s) 15, 42, 556, 588, 614, 734
HpyAV CCTTC 2 cut(s) 125, 806
HpyCH4III ACNGT 1 cut(s) 713
HpyCH4IV ACGT 1 cut(s) 730
HpyCH4V TGCA 3 cut(s) 298, 320, 371
HpySE526I ACGT 1 cut(s) 730
Hsp92II CATG 5 cut(s) 577, 595, 652, 758, 778
HspAI GCGC 1 cut(s) 671
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 4 cut(s) 88, 140, 457, 722
LmnI GCTCC 2 cut(s) 278, 284
Lsp1109I GCAGC 2 cut(s) 192, 304
LweI GCATC 1 cut(s) 525
MaeI CTAG 3 cut(s) 149, 695, 833
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 4 cut(s) 152, 349, 604, 791
MalI GATC 4 cut(s) 90, 142, 459, 724
MboI GATC 4 cut(s) 88, 140, 457, 722
MboII GAAGA 2 cut(s) 135, 204
MflI RGATCY 2 cut(s) 88, 140
MlsI TGGCCA 1 cut(s) 495
MluCI AATT 7 cut(s) 48, 102, 112, 170, 259, 761, 823
MluI ACGCGT 1 cut(s) 229
MluNI TGGCCA 1 cut(s) 495
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 9 cut(s) 187, 275, 367, 457, 506, 511, 532, 641, 782
Mox20I TGGCCA 1 cut(s) 495
MroXI GAANNNNTTC 1 cut(s) 813
MscI TGGCCA 1 cut(s) 495
MseI TTAA 3 cut(s) 20, 111, 428
MslI CAYNNNNRTG 1 cut(s) 711
Msp20I TGGCCA 1 cut(s) 495
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 2 cut(s) 314, 535
MvaI CCWGG 2 cut(s) 314, 535
MvnI CGCG 2 cut(s) 231, 673
NcoI CCATGG 1 cut(s) 648
NdeII GATC 4 cut(s) 88, 140, 457, 722
NlaIII CATG 5 cut(s) 577, 595, 652, 758, 778
OliI CACNNNNGTG 1 cut(s) 711
PasI CCCWGGG 1 cut(s) 534
PdmI GAANNNNTTC 1 cut(s) 813
PkrI GCNGC 3 cut(s) 182, 319, 341
Psp6I CCWGG 2 cut(s) 312, 533
PspEI GGTNACC 2 cut(s) 152, 791
PspGI CCWGG 2 cut(s) 312, 533
PspPI GGNCC 1 cut(s) 310
PsuI RGATCY 2 cut(s) 88, 140
RsaI GTAC 4 cut(s) 228, 524, 613, 729
RsaNI GTAC 4 cut(s) 227, 523, 612, 728
RseI CAYNNNNRTG 1 cut(s) 711
SaqAI TTAA 3 cut(s) 20, 111, 428
SatI GCNGC 3 cut(s) 181, 318, 340
Sau3AI GATC 4 cut(s) 88, 140, 457, 722
Sau96I GGNCC 1 cut(s) 310
ScrFI CCNGG 2 cut(s) 314, 535
SfaNI GCATC 1 cut(s) 525
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 7 cut(s) 48, 102, 112, 170, 259, 761, 823
SsiI CCGC 1 cut(s) 340
SspMI CTAG 3 cut(s) 149, 695, 833
StyD4I CCNGG 2 cut(s) 312, 533
StyI CCWWGG 2 cut(s) 222, 648
TaaI ACNGT 1 cut(s) 713
TaiI ACGT 1 cut(s) 733
TaqI TCGA 1 cut(s) 741
TasI AATT 7 cut(s) 48, 102, 112, 170, 259, 761, 823
TauI GCSGC 1 cut(s) 342
Tru1I TTAA 3 cut(s) 20, 111, 428
Tru9I TTAA 3 cut(s) 20, 111, 428
TscAI CASTG 1 cut(s) 164
TseI GCWGC 2 cut(s) 180, 317
TspDTI ATGAA 5 cut(s) 204, 411, 435, 702, 791
TspRI CASTG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 1 cut(s) 823
XcmI CCANNNNNNNNNTGG 2 cut(s) 80, 779
XmnI GAANNNNTTC 1 cut(s) 813
XspI CTAG 3 cut(s) 149, 695, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.