Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Reverse (-)

46658557 .. 46659716

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50203

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTTTTCTTTGGCTTCCCCTATGTATTTGCCAGTCCCTTTCATTTTAGGTTGTTACTTCTTTCTTTCTCTGCTTTTGTACGTGCTCTTGGGTATTTATTCTAGTGTGAAGAAAAACATCTTCATTCATCTTAAATTCAAGTTGTTCAAAAAAAATGGAGGGTTATTGTTAGAGCAGCATATTGCTAATTCTCATGGACCTGGAGCAGGATGCACAAAAATTTTCACAGCCGAGGAGCTTGTGATGGAGATCATTTTTGCACAAGAAAAGGTACTAGTGGAGGAGGGCCAAATCGAGTGTTTTATAAATGAGATTATCACTCTTGCCCATATCAACCATCAAAATGTGATCAAGTTCTTGGGCTGCTGCTTAGAGACTGAAGCTCCCATTTTGGTTTATGAATTCACCTCTAACGGGACCCTTTTCGATTACATTCATGATTGGAAAAATGGGAAAGTTTCAATGCCACATTGGGATATCCTTATGGAGATAGCATCAGAATCTGCAGCAGGTCTTGCTTATTTGCATTCTTCATCAATCATTCATGGAAATGTCAAATCTTCCAACATTTTACTAACTGATTGCTTGGCCAAAGTTGCTGGTTTTGGACCTCCAAGTTTAGTCCCTAGCAATGAGTCCCAGATAAGTACATTGGTGCAGAGGACACTCGGTTATCTGGACCCAGAGTATTTCGTTACAGGCCAATTGACAGATAAGAGTGATGTCTACAGCTTTGGAGTCGTTTTGGTAGAAATTTTAACTGGAGAGAAGCCCATATCCTTTAATAGACCAGAAAATCAACGGATCATAACTTGTCTTTTCCTTTTGTCCATGGATCAACAAAATAGCCTGTTTCAGATTCTTGCTCCACAAGTTAAGGAAGAAAACAAAGAACAAGTCAGAGCAGTCGCAGAACTCGCAAAGCAATGCCTCAAGTTGAGTAGTGCAGAAAGACCAACAATGGAAGAAGTGGCCGGAGAGTTAAAGAGGCTGTCACTCCTGTCAGACACGTATCTTACGGTTCATGTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0030312 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0090066 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

344

Amino Acids

38.37

Weight (kDa)

5.5

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	90 - 324	2.5e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	95 - 327	5.8e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	726
AclWI	GGATC	2 cut(s)	812, 843
AcoI	YGGCCR	2 cut(s)	588, 972
AcsI	RAATTY	4 cut(s)	134, 219, 401, 753
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	3 cut(s)	80, 273, 649
AfiI	CCNNNNNNNGG	2 cut(s)	206, 414
AflIII	ACRYGT	1 cut(s)	1008
AgsI	TTSAA	3 cut(s)	139, 148, 462
AhlI	ACTAGT	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	3 cut(s)	238, 383, 732
AluI	AGCT	3 cut(s)	238, 383, 732
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	2 cut(s)	812, 843
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	4 cut(s)	286, 588, 700, 972
ApeKI	GCWGC	4 cut(s)	175, 363, 366, 506
ApoI	RAATTY	4 cut(s)	134, 219, 401, 753
ArsI	GACNNNNNNTTYG	2 cut(s)	882, 914
AspS9I	GGNCC	5 cut(s)	197, 286, 417, 608, 679
AsuHPI	GGTGA	1 cut(s)	397
AvaII	GGWCC	4 cut(s)	197, 417, 608, 679
BalI	TGGCCA	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	4 cut(s)	187, 350, 353, 518
BccI	CCATC	2 cut(s)	238, 345
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	368
BcuI	ACTAGT	1 cut(s)	274
BfaI	CTAG	3 cut(s)	102, 275, 627
BfmI	CTRYAG	2 cut(s)	504, 727
BfuAI	ACCTGC	1 cut(s)	500
BisI	GCNGC	4 cut(s)	176, 364, 367, 507
BlsI	GCNGC	4 cut(s)	177, 365, 368, 508
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	4 cut(s)	197, 417, 608, 679
BmgT120I	GGNCC	5 cut(s)	197, 286, 417, 608, 679
BmiI	GGNNCC	3 cut(s)	418, 419, 681
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	200, 503
BpmI	CTGGAG	2 cut(s)	222, 783
BpuEI	CTTGAG	1 cut(s)	917
BsaAI	YACGTR	2 cut(s)	82, 1011
BsaBI	GATNNNNATC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	231, 831
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 414
Bse1I	ACTGG	2 cut(s)	32, 766
Bse3DI	GCAATG	2 cut(s)	637, 932
Bse8I	GATNNNNATC	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	231, 831
BseGI	GGATG	1 cut(s)	215
BseJI	GATNNNNATC	1 cut(s)	248
BseLI	CCNNNNNNNGG	2 cut(s)	206, 414
BseMI	GCAATG	2 cut(s)	637, 932
BseNI	ACTGG	2 cut(s)	32, 766
BseRI	GAGGAG	2 cut(s)	248, 296
BseXI	GCAGC	4 cut(s)	187, 350, 353, 518
BsgI	GTGCAG	2 cut(s)	677, 966
BshFI	GGCC	4 cut(s)	288, 590, 702, 974
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	975
BslFI	GGGAC	4 cut(s)	20, 430, 608, 622
BslI	CCNNNNNNNGG	2 cut(s)	206, 414
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	4 cut(s)	20, 430, 608, 622
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	4 cut(s)	288, 590, 702, 974
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	4 cut(s)	249, 348, 804, 835
Bsp19I	CCATGG	1 cut(s)	831
BspANI	GGCC	4 cut(s)	288, 590, 702, 974
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	3 cut(s)	418, 419, 681
BspMAI	CTGCAG	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	500
BspPI	GGATC	2 cut(s)	812, 843
BsrDI	GCAATG	2 cut(s)	637, 932
BsrI	ACTGG	2 cut(s)	32, 766
BssECI	CCNNGG	2 cut(s)	231, 831
BssMI	GATC	4 cut(s)	249, 348, 804, 835
BssT1I	CCWWGG	1 cut(s)	831
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	1021
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstBAI	YACGTR	2 cut(s)	82, 1011
BstDEI	CTNAG	1 cut(s)	370
BstDSI	CCRYGG	1 cut(s)	831
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	215
BstKTI	GATC	4 cut(s)	252, 351, 807, 838
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	4 cut(s)	249, 348, 804, 835
BstMWI	GCNNNNNNNGC	3 cut(s)	515, 596, 917
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	2 cut(s)	504, 727
BstV1I	GCAGC	4 cut(s)	187, 350, 353, 518
BsuRI	GGCC	4 cut(s)	288, 590, 702, 974
BtgI	CCRYGG	1 cut(s)	831
BtsCI	GGATG	1 cut(s)	215
BveI	ACCTGC	1 cut(s)	500
CaiI	CAGNNNCTG	1 cut(s)	503
CciI	TCATGA	1 cut(s)	436
Cfr13I	GGNCC	5 cut(s)	197, 286, 417, 608, 679
Csp6I	GTAC	3 cut(s)	79, 272, 648
CviAII	CATG	5 cut(s)	194, 437, 545, 832, 1025
CviQI	GTAC	3 cut(s)	79, 272, 648
DdeI	CTNAG	1 cut(s)	370
DpnI	GATC	4 cut(s)	251, 350, 806, 837
DpnII	GATC	4 cut(s)	249, 348, 804, 835
EaeI	YGGCCR	2 cut(s)	588, 972
Eco130I	CCWWGG	1 cut(s)	831
Eco32I	GATATC	1 cut(s)	478
Eco47I	GGWCC	4 cut(s)	197, 417, 608, 679
Eco57I	CTGAAG	1 cut(s)	399
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	417
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	831
ErhI	CCWWGG	1 cut(s)	831
FaeI	CATG	5 cut(s)	197, 440, 548, 835, 1028
FaqI	GGGAC	4 cut(s)	20, 430, 608, 622
FatI	CATG	5 cut(s)	193, 436, 544, 831, 1024
FbaI	TGATCA	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	4 cut(s)	176, 364, 367, 507
FokI	GGATG	1 cut(s)	222
Fsp4HI	GCNGC	4 cut(s)	176, 364, 367, 507
FspBI	CTAG	3 cut(s)	102, 275, 627
GluI	GCNGC	4 cut(s)	176, 364, 367, 507
GsuI	CTGGAG	2 cut(s)	222, 783
HaeIII	GGCC	4 cut(s)	288, 590, 702, 974
HapII	CCGG	1 cut(s)	975
Hin1II	CATG	5 cut(s)	197, 440, 548, 835, 1028
HinfI	GANTC	4 cut(s)	500, 635, 738, 859
HpaII	CCGG	1 cut(s)	975
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	727
Hpy188I	TCNGA	4 cut(s)	499, 858, 902, 1006
Hpy188III	TCNNGA	2 cut(s)	437, 677
Hpy8I	GTNNAC	1 cut(s)	727
HpyCH4III	ACNGT	1 cut(s)	1021
HpyCH4IV	ACGT	2 cut(s)	81, 1010
HpyCH4V	TGCA	6 cut(s)	213, 260, 506, 526, 658, 947
HpyF10VI	GCNNNNNNNGC	3 cut(s)	515, 596, 917
HpyF3I	CTNAG	1 cut(s)	370
HpySE526I	ACGT	2 cut(s)	81, 1010
Hsp92II	CATG	5 cut(s)	197, 440, 548, 835, 1028
KflI	GGGWCCC	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	4 cut(s)	249, 348, 804, 835
LmnI	GCTCC	4 cut(s)	203, 235, 388, 871
Lsp1109I	GCAGC	4 cut(s)	187, 350, 353, 518
LweI	GCATC	2 cut(s)	200, 503
MaeI	CTAG	3 cut(s)	102, 275, 627
MaeII	ACGT	2 cut(s)	81, 1010
MaeIII	GTNAC	3 cut(s)	53, 694, 993
MalI	GATC	4 cut(s)	251, 350, 806, 837
MboI	GATC	4 cut(s)	249, 348, 804, 835
MboII	GAAGA	6 cut(s)	112, 121, 522, 552, 893, 977
MfeI	CAATTG	1 cut(s)	704
MhlI	GDGCHC	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	6 cut(s)	134, 187, 219, 401, 704, 753
MluNI	TGGCCA	1 cut(s)	590
MlyI	GAGTC	2 cut(s)	644, 747
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	9 cut(s)	152, 226, 274, 277, 418, 621, 654, 941, 981
Mox20I	TGGCCA	1 cut(s)	590
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	6 cut(s)	132, 758, 783, 876, 983, 1033
MslI	CAYNNNNRTG	2 cut(s)	342, 549
Msp20I	TGGCCA	1 cut(s)	590
MspI	CCGG	1 cut(s)	975
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	704
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	515, 596, 917
NcoI	CCATGG	1 cut(s)	831
NdeII	GATC	4 cut(s)	249, 348, 804, 835
NlaIII	CATG	5 cut(s)	197, 440, 548, 835, 1028
NlaIV	GGNNCC	3 cut(s)	418, 419, 681
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	993
PagI	TCATGA	1 cut(s)	436
PctI	GAATGC	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	500, 859
PkrI	GCNGC	4 cut(s)	177, 365, 368, 508
PleI	GAGTC	2 cut(s)	643, 746
PpsI	GAGTC	2 cut(s)	643, 746
Ppu21I	YACGTR	2 cut(s)	82, 1011
PpuMI	RGGWCCY	1 cut(s)	417
PsiI	TTATAA	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	3 cut(s)	418, 419, 681
PspPI	GGNCC	5 cut(s)	197, 286, 417, 608, 679
PspPPI	RGGWCCY	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	508
PstNI	CAGNNNCTG	1 cut(s)	503
RsaI	GTAC	3 cut(s)	80, 273, 649
RsaNI	GTAC	3 cut(s)	79, 272, 648
RseI	CAYNNNNRTG	2 cut(s)	342, 549
SaqAI	TTAA	6 cut(s)	132, 758, 783, 876, 983, 1033
SatI	GCNGC	4 cut(s)	176, 364, 367, 507
Sau3AI	GATC	4 cut(s)	249, 348, 804, 835
Sau96I	GGNCC	5 cut(s)	197, 286, 417, 608, 679
SchI	GAGTC	2 cut(s)	644, 747
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	2 cut(s)	200, 503
SfcI	CTRYAG	2 cut(s)	504, 727
SinI	GGWCC	4 cut(s)	197, 417, 608, 679
SmiMI	CAYNNNNRTG	2 cut(s)	342, 549
SmlI	CTYRAG	1 cut(s)	932
SmoI	CTYRAG	1 cut(s)	932
SpeI	ACTAGT	1 cut(s)	274
Sse9I	AATT	6 cut(s)	134, 187, 219, 401, 704, 753
SspMI	CTAG	3 cut(s)	102, 275, 627
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	831
TaaI	ACNGT	1 cut(s)	1021
TaiI	ACGT	2 cut(s)	84, 1013
TaqI	TCGA	2 cut(s)	294, 426
TasI	AATT	6 cut(s)	134, 187, 219, 401, 704, 753
TatI	WGTACW	1 cut(s)	647
TfiI	GAWTC	2 cut(s)	500, 859
Tru1I	TTAA	6 cut(s)	132, 758, 783, 876, 983, 1033
Tru9I	TTAA	6 cut(s)	132, 758, 783, 876, 983, 1033
TseFI	GTSAC	1 cut(s)	993
TseI	GCWGC	4 cut(s)	175, 363, 366, 506
Tsp45I	GTSAC	1 cut(s)	993
TspDTI	ATGAA	8 cut(s)	31, 112, 116, 414, 425, 522, 533, 1013
TspGWI	ACGGA	1 cut(s)	817
VpaK11BI	GGWCC	4 cut(s)	197, 417, 608, 679
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	4 cut(s)	134, 219, 401, 753
XmiI	GTMKAC	1 cut(s)	726
XspI	CTAG	3 cut(s)	102, 275, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.