Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Forward (+)

32288863 .. 32292433

Gene Structure 3571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0292500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCGACACCGGATATTGCAGGAATACTGGACAAGTCGAAAGAGCTTGATCAGTTGAGGAAAGACCAAGAAGAGGTGCTCATTGAGATCAACAAGATCCATAAGAAGCTCCAAGCCACTCCTGAAGTAGTTGAGAAGCCTGGAGATAGTTCATTGTCGAAGTTGAAGAATTTATATGCTCATGCGAAAGAGCTTTCAGAAAATGAAGTGAATGTTTCAAATTCGTTGTTGGTTCAACTTGATGCTCTATTGCCTTCTGGACCTCAAGGGCAGCCACGAAGAAGGATAGAAGGTGAGCCGAAAAGGAAGAGAATGAAGAGTGACTCTGAGATTCCAAGGATTTCCCCTGCCCTCCGAAATCAACTTGAGGCCTGTGCCAGTCTAAAAGGTGAACAGGTAGCAGCTAGGGTCACTCAAGAAGATGCTGATAAGGACGAGTGGTTTGTTGTAAAAGTGATCCATTTTGACAAGGACGCAAGAGAATTTGAAGTACTAGATGAGGAGCCTGGTGATGATGAAGAAGGCAGTGGCCAAAGAAAGTACAAGTTGCCTATGTCAGCTATTATTCCTTTCCCCAAGAGAAATGAACCCTCCCCTACCCTAGATTTTCCTACTGGAAGACATGTTTTGGCAGTTTATCCGGGAACAACTGCACTATACAAGGCAACTGTGGTTAATGTTCATCGTAAGAGGAAGACGGATGATTATTTATTGGAATTTGATGATGACGAGGAAGATGGGTCTTTGCCTCAGAGGACAGTGCCCTTCCATAAGGTTGTTGCCCTACCAGAAGGACATCGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0030312 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0090066 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

268

Amino Acids

30.26

Weight (kDa)

5.52

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGF29_Tudor	PF07039	129 - 263	1.5e-34	SGF29 tudor-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	91, 451
AcoI	YGGCCR	1 cut(s)	529
AcsI	RAATTY	4 cut(s)	169, 220, 482, 716
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	2 cut(s)	492, 542
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflIII	ACRYGT	1 cut(s)	622
AgsI	TTSAA	4 cut(s)	166, 219, 236, 488
AjnI	CCWGG	2 cut(s)	139, 505
AluBI	AGCT	5 cut(s)	46, 109, 193, 404, 560
AluI	AGCT	5 cut(s)	46, 109, 193, 404, 560
Alw21I	GWGCWC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	91, 451
AoxI	GGCC	2 cut(s)	369, 529
ApeKI	GCWGC	2 cut(s)	271, 401
ApoI	RAATTY	4 cut(s)	169, 220, 482, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	642
AsuHPI	GGTGA	3 cut(s)	305, 401, 521
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	765
BalI	TGGCCA	1 cut(s)	531
BbsI	GAAGAC	2 cut(s)	625, 701
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	283, 413
BccI	CCATC	1 cut(s)	731
BciT130I	CCWGG	2 cut(s)	141, 507
BclI	TGATCA	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	642
BfaI	CTAG	3 cut(s)	405, 494, 602
BisI	GCNGC	2 cut(s)	272, 402
BlsI	GCNGC	2 cut(s)	273, 403
BmcAI	AGTACT	1 cut(s)	492
Bme1390I	CCNGG	3 cut(s)	141, 507, 642
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	3 cut(s)	141, 507, 642
BmsI	GCATC	2 cut(s)	232, 412
BpiI	GAAGAC	2 cut(s)	625, 701
BpmI	CTGGAG	1 cut(s)	162
BpuEI	CTTGAG	3 cut(s)	249, 386, 399
BpuMI	CCSGG	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	335
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	4 cut(s)	33, 378, 619, 802
BseBI	CCWGG	2 cut(s)	141, 507
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	706
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	2 cut(s)	318, 764
BseNI	ACTGG	4 cut(s)	33, 378, 619, 802
BseRI	GAGGAG	1 cut(s)	515
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	2 cut(s)	283, 413
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	2 cut(s)	371, 531
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	11, 641
BslI	CCNNNNNNNGG	1 cut(s)	73
BsnI	GGCC	2 cut(s)	371, 531
Bsp1286I	GDGCHC	2 cut(s)	81, 765
Bsp143I	GATC	4 cut(s)	49, 87, 96, 456
BspANI	GGCC	2 cut(s)	371, 531
BspCNI	CTCAG	2 cut(s)	319, 763
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	2 cut(s)	91, 451
BsrI	ACTGG	4 cut(s)	33, 378, 619, 802
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	4 cut(s)	49, 87, 96, 456
BssT1I	CCWWGG	1 cut(s)	335
Bst2UI	CCWGG	2 cut(s)	141, 507
Bst4CI	ACNGT	2 cut(s)	670, 760
Bst6I	CTCTTC	3 cut(s)	66, 302, 311
BstDEI	CTNAG	2 cut(s)	327, 750
BstF5I	GGATG	1 cut(s)	706
BstKTI	GATC	4 cut(s)	52, 90, 99, 459
BstMBI	GATC	4 cut(s)	49, 87, 96, 456
BstNI	CCWGG	2 cut(s)	141, 507
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	3 cut(s)	139, 505, 640
BstSLI	GKGCMC	1 cut(s)	765
BstV1I	GCAGC	2 cut(s)	283, 413
BstV2I	GAAGAC	2 cut(s)	625, 701
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	371, 531
BtgZI	GCGATG	1 cut(s)	782
BtsCI	GGATG	1 cut(s)	706
BtsI	GCAGTG	1 cut(s)	532
BtsIMutI	CAGTG	2 cut(s)	532, 765
Cfr13I	GGNCC	1 cut(s)	260
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	491, 541
CviAII	CATG	2 cut(s)	182, 623
CviQI	GTAC	2 cut(s)	491, 541
DdeI	CTNAG	2 cut(s)	327, 750
DpnI	GATC	4 cut(s)	51, 89, 98, 458
DpnII	GATC	4 cut(s)	49, 87, 96, 456
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	3 cut(s)	66, 302, 311
EarI	CTCTTC	3 cut(s)	66, 302, 311
Eco130I	CCWWGG	1 cut(s)	335
Eco147I	AGGCCT	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	139, 505
EcoT14I	CCWWGG	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	2 cut(s)	185, 626
FaiI	YATR	8 cut(s)	102, 175, 177, 183, 554, 624, 658, 771
FatI	CATG	2 cut(s)	181, 622
FbaI	TGATCA	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	272, 402
FokI	GGATG	1 cut(s)	713
Fsp4HI	GCNGC	2 cut(s)	272, 402
FspBI	CTAG	3 cut(s)	405, 494, 602
GluI	GCNGC	2 cut(s)	272, 402
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	371, 531
HapII	CCGG	2 cut(s)	11, 641
HgaI	GACGC	1 cut(s)	482
Hin1II	CATG	2 cut(s)	185, 626
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	323, 331
HpaII	CCGG	2 cut(s)	11, 641
HphI	GGTGA	3 cut(s)	305, 401, 521
Hpy166II	GTNNAC	2 cut(s)	6, 392
Hpy188I	TCNGA	4 cut(s)	199, 328, 356, 753
Hpy188III	TCNNGA	3 cut(s)	122, 258, 416
Hpy8I	GTNNAC	2 cut(s)	6, 392
HpyAV	CCTTC	6 cut(s)	264, 276, 284, 515, 775, 785
HpyCH4III	ACNGT	2 cut(s)	670, 760
HpyCH4V	TGCA	2 cut(s)	20, 653
HpyF3I	CTNAG	2 cut(s)	327, 750
Hsp92II	CATG	2 cut(s)	185, 626
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	4 cut(s)	49, 87, 96, 456
LmnI	GCTCC	2 cut(s)	114, 502
Lsp1109I	GCAGC	2 cut(s)	283, 413
LweI	GCATC	2 cut(s)	232, 412
MaeI	CTAG	3 cut(s)	405, 494, 602
MaeIII	GTNAC	2 cut(s)	320, 409
MalI	GATC	4 cut(s)	51, 89, 98, 458
MboI	GATC	4 cut(s)	49, 87, 96, 456
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	2 cut(s)	81, 765
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	4 cut(s)	169, 220, 482, 716
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	317
Mox20I	TGGCCA	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	1 cut(s)	675
Msp20I	TGGCCA	1 cut(s)	531
MspI	CCGG	2 cut(s)	11, 641
MspR9I	CCNGG	3 cut(s)	141, 507, 642
MvaI	CCWGG	2 cut(s)	141, 507
NciI	CCSGG	1 cut(s)	642
NdeII	GATC	4 cut(s)	49, 87, 96, 456
NlaIII	CATG	2 cut(s)	185, 626
NlaIV	GGNNCC	1 cut(s)	504
NmuCI	GTSAC	2 cut(s)	320, 409
NspI	RCATGY	1 cut(s)	626
PceI	AGGCCT	1 cut(s)	371
PciI	ACATGT	1 cut(s)	622
PfeI	GAWTC	1 cut(s)	331
PfoI	TCCNGGA	1 cut(s)	640
PkrI	GCNGC	2 cut(s)	273, 403
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PscI	ACATGT	1 cut(s)	622
Psp6I	CCWGG	2 cut(s)	139, 505
PspGI	CCWGG	2 cut(s)	139, 505
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	96
RsaI	GTAC	2 cut(s)	492, 542
RsaNI	GTAC	2 cut(s)	491, 541
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	2 cut(s)	272, 402
Sau3AI	GATC	4 cut(s)	49, 87, 96, 456
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	492
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	3 cut(s)	141, 507, 642
SduI	GDGCHC	2 cut(s)	81, 765
SfaNI	GCATC	2 cut(s)	232, 412
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	3 cut(s)	264, 365, 414
SmoI	CTYRAG	3 cut(s)	264, 365, 414
Sse9I	AATT	4 cut(s)	169, 220, 482, 716
SseBI	AGGCCT	1 cut(s)	371
SspMI	CTAG	3 cut(s)	405, 494, 602
StuI	AGGCCT	1 cut(s)	371
StyD4I	CCNGG	3 cut(s)	139, 505, 640
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	2 cut(s)	670, 760
TaqI	TCGA	3 cut(s)	5, 38, 158
TasI	AATT	4 cut(s)	169, 220, 482, 716
TatI	WGTACW	2 cut(s)	490, 540
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	2 cut(s)	532, 765
TseFI	GTSAC	2 cut(s)	320, 409
TseI	GCWGC	2 cut(s)	271, 401
Tsp45I	GTSAC	2 cut(s)	320, 409
TspDTI	ATGAA	6 cut(s)	141, 219, 329, 531, 600, 671
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	2 cut(s)	532, 765
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	4 cut(s)	169, 220, 482, 716
XceI	RCATGY	1 cut(s)	626
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	3 cut(s)	405, 494, 602
ZrmI	AGTACT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.