Rh2AG259900

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
29896929 .. 29897503
575 bp
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UTR
Exon/CDS
Intron
Rh2AG259900.1

Sequence Viewer

Length: 369 bp
ATGAGCATTACAGGAAACACCAGTAATAACAGATGGAATCAAACTTTTGCAGCAGGATACTGCAAAAGTTCTTTTAGACGGAGCGTGGAAAAGTTGCCTAAGATAGGACGAAGTTTCTTGTTTAATCACTCAGAACCATTTAGCAGCAAAGCAGAAAACCTTCTTAAACGTGGTACAGTGAGAAAACCAGAAGCTTATGATGGAATTTCAAAGACAAGACGGGAATTGTACCACATTAAAAATGGTAAAGGTTCCAGTCCATACATCTCAGTCTTTCCGGTAAATCTGATTCTTGGTCTTGGCTCTTGTTTCTCAATTCTTTTGTTTGTGATATCTGGGGTTTATTCGAGTGTGAAGAATCTAAGCTGA

Protein Analysis

122

Amino Acids

13.6

Weight (kDa)

10.18

Isoelectric Point (pI)

60.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 204
AfaI GTAC 2 cut(s) 175, 230
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 1 cut(s) 210
AluBI AGCT 2 cut(s) 194, 366
AluI AGCT 2 cut(s) 194, 366
ApeKI GCWGC 2 cut(s) 50, 144
ApoI RAATTY 1 cut(s) 204
Asp700I GAANNNNTTC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 62, 156
BccI CCATC 2 cut(s) 27, 194
BciVI GTATCC 1 cut(s) 50
BfuI GTATCC 1 cut(s) 50
BisI GCNGC 2 cut(s) 51, 145
BlsI GCNGC 2 cut(s) 52, 146
BmiI GGNNCC 1 cut(s) 253
BsaWI WCCGGW 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 21, 255
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 2 cut(s) 144, 282
BseNI ACTGG 2 cut(s) 21, 255
BseXI GCAGC 2 cut(s) 62, 156
BsiSI CCGG 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 104
BspCNI CTCAG 2 cut(s) 143, 281
BspLI GGNNCC 1 cut(s) 253
BsrI ACTGG 2 cut(s) 21, 255
Bst4CI ACNGT 1 cut(s) 178
BstDEI CTNAG 4 cut(s) 99, 130, 268, 362
BstENI CCTNNNNNAGG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 62, 156
BsuI GTATCC 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 183
Csp6I GTAC 2 cut(s) 174, 229
CviJI RGCY 3 cut(s) 194, 303, 366
CviKI_1 RGCY 3 cut(s) 194, 303, 366
CviQI GTAC 2 cut(s) 174, 229
DdeI CTNAG 4 cut(s) 99, 130, 268, 362
Eco32I GATATC 1 cut(s) 333
EcoNI CCTNNNNNAGG 1 cut(s) 102
EcoRV GATATC 1 cut(s) 333
FaiI YATR 2 cut(s) 198, 262
Fnu4HI GCNGC 2 cut(s) 51, 145
Fsp4HI GCNGC 2 cut(s) 51, 145
GluI GCNGC 2 cut(s) 51, 145
HapII CCGG 1 cut(s) 278
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 3 cut(s) 37, 289, 358
HpaII CCGG 1 cut(s) 278
Hpy188I TCNGA 2 cut(s) 133, 288
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 50, 63
HpyF3I CTNAG 4 cut(s) 99, 130, 268, 362
HpySE526I ACGT 1 cut(s) 169
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 6 cut(s) 34, 39, 201, 268, 291, 321
Lsp1109I GCAGC 2 cut(s) 62, 156
MaeII ACGT 1 cut(s) 169
MboII GAAGA 1 cut(s) 367
MluCI AATT 3 cut(s) 204, 224, 315
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 3 cut(s) 123, 165, 237
MspI CCGG 1 cut(s) 278
NlaIV GGNNCC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 3 cut(s) 37, 289, 358
PkrI GCNGC 2 cut(s) 52, 146
PspN4I GGNNCC 1 cut(s) 253
RsaI GTAC 2 cut(s) 175, 230
RsaNI GTAC 2 cut(s) 174, 229
SaqAI TTAA 3 cut(s) 123, 165, 237
SatI GCNGC 2 cut(s) 51, 145
SetI ASST 5 cut(s) 162, 172, 196, 253, 368
Sse9I AATT 3 cut(s) 204, 224, 315
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 347
TasI AATT 3 cut(s) 204, 224, 315
TfiI GAWTC 3 cut(s) 37, 289, 358
Tru1I TTAA 3 cut(s) 123, 165, 237
Tru9I TTAA 3 cut(s) 123, 165, 237
TscAI CASTG 1 cut(s) 183
TseI GCWGC 2 cut(s) 50, 144
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 1 cut(s) 183
XagI CCTNNNNNAGG 1 cut(s) 102
XapI RAATTY 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.