Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038649.1

Orthogroup ID

OG0001114

Physical Location & Seq

Genomic Coordinates Reverse (-)

122 .. 1096

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038649.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atggagagcttgattctggtaccagagcttctcttgcccaacaggatccctcggttaaccttattagtttctttgttgttcttagcaattccattagaagcagccaacgcctacccaaaaaaatgtggaaatctcaacctcacattgccctttgaatttggcagtcccgtaaaaggaagtggatcttctataggtgattactggtttgacataagacatagcagcacttcctatagaacaccaacatccttcataggcgaaactagtcttgaggtacaggtacaggtttcttcatttaccaaggtacgcgtaaataactccattgtttacgcttatagtaattataggtgctacactgaagctggagcgaagatgttgcacgcaagcaatctccatgctgctgtaatcaatttgacagatggcgcccagattattagaacctccaacactattactgcaaacaagttcacattgataggttatgagtcatttgattttgtaggttatgacccattaatttccagcatcaacagtacaatgattaatcaggaaagaagggcttgttctggtattaactgtggtcattctttcattcaaagaggcatcaagtccttttttctgaaagaggcaggaagtgtaggaaacattactttgttagctatgtatttttggtttatcatgagactgagtggtagtggtacaccaatcaattccagactcacgcttcctgtgtttatggtagaaaacatcagctatgcgagtcgtcacactctacggccaccaggcagctccaggttgaaattatcagctcacactctctatggcattccaattcaaaaaagggattccttgtatctaaggttcgcgctcaaagttgacacacataaaaatctggaaaaccacatgaaaaaggacagaagtttccttgcacacatcaaagtattttgggaaattttcattctaggtacgtgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

324

Amino Acids

36.28

Weight (kDa)

9.53

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001114)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22042 FvH4_1g22043 FvH4_4g18290 FvH4_5g14090 FvH4_5g14180 FvH4_7g33870
malus_domestica	MD01G1234700.v1.1 MD05G1077200.v1.1 MD07G1307300.v1.1 MD07G1307900.v1.1
prunus_persica	Prupe.2G325000_v2.0.a1
pyrus_communis	pycom01g24290
rosa_chinensis	RchiOBHm_Chr1g0383981 RchiOBHm_Chr2g0116101 RchiOBHm_Chr2g0116111 RchiOBHm_Chr2g0130571 RchiOBHm_Chr2g0130581 RchiOBHm_Chr5g0047041
rosa_laevigata	RLG00000018239 RLG00000018240 RLG00000019138 RLG00000019139 RLG00000026080 RLG00000026081
rosa_multiflora	Rmu_co8462601.1_g000001 Rmu_sc0001968.1_g000001 Rmu_sc0002288.1_g000011 Rmu_sc0005139.1_g000022 Rmu_sc0006388.1_g000031 Rmu_sc0006388.1_g000032 Rmu_sc0038649.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034400 Rroxscaffold_2G00113900 Rroxscaffold_2G00113940 Rroxscaffold_4G00320840 Rroxscaffold_5G00364610
rosa_rugosa	Rorug01G0183500 Rorug01G0444000 Rorug02G0292100 Rorug02G0292200 Rorug02G0292300 Rorug02G0292500 Rorug02G0292500 Rorug02G0292500 Rorug02G0385800 Rorug05G0233500
rosa_samantha	Rh1AG469600 Rh2AG259900 Rh2AG343600 Rh2AG343700 Rh2BG352100 Rh2CG266200 Rh2CG330900 Rh2DG268100 Rh2DG370300 Rh5AG312600 Rh5DG332700
rosa_wichuraiana	Rw2G020350 Rw5G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	2 cut(s)	19, 422
AccII	CGCG	2 cut(s)	309, 866
AclWI	GGATC	3 cut(s)	40, 53, 190
AcoI	YGGCCR	1 cut(s)	776
AcsI	RAATTY	2 cut(s)	155, 951
AcuI	CTGAAG	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	7 cut(s)	21, 276, 282, 306, 535, 700, 967
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	4 cut(s)	155, 596, 799, 836
AhlI	ACTAGT	1 cut(s)	263
AjnI	CCWGG	2 cut(s)	781, 791
AluBI	AGCT	7 cut(s)	9, 28, 362, 659, 753, 789, 809
AluI	AGCT	7 cut(s)	9, 28, 362, 659, 753, 789, 809
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	3 cut(s)	40, 53, 190
AoxI	GGCC	1 cut(s)	776
ApeKI	GCWGC	4 cut(s)	101, 222, 398, 786
ApoI	RAATTY	2 cut(s)	155, 951
AseI	ATTAAT	2 cut(s)	515, 543
Asp718I	GGTACC	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	425, 868
AsuHPI	GGTGA	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	45
BanI	GGYRCC	2 cut(s)	19, 422
BarI	GAAGNNNNNNTAC	2 cut(s)	12, 44
BbvI	GCAGC	4 cut(s)	113, 234, 385, 798
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	791
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BciT130I	CCWGG	2 cut(s)	783, 793
BcoDI	GTCTC	1 cut(s)	676
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	3 cut(s)	264, 962, 973
BfmI	CTRYAG	2 cut(s)	189, 232
BfoI	RGCGCY	1 cut(s)	426
BisI	GCNGC	4 cut(s)	102, 223, 399, 787
BlsI	GCNGC	4 cut(s)	103, 224, 400, 788
Bme1390I	CCNGG	2 cut(s)	783, 793
BmiI	GGNNCC	3 cut(s)	21, 47, 424
BmrFI	CCNGG	2 cut(s)	783, 793
BmsI	GCATC	2 cut(s)	534, 612
BpmI	CTGGAG	2 cut(s)	384, 775
BpuEI	CTTGAG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	969
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	50, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	143
BseBI	CCWGG	2 cut(s)	783, 793
BseDI	CCNNGG	2 cut(s)	50, 300
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	677
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	4 cut(s)	113, 234, 385, 798
Bsh1236I	CGCG	2 cut(s)	309, 866
BshFI	GGCC	1 cut(s)	778
BshNI	GGYRCC	2 cut(s)	19, 422
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	676
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	1 cut(s)	778
Bsp143I	GATC	2 cut(s)	45, 182
BspANI	GGCC	1 cut(s)	778
BspCNI	CTCAG	1 cut(s)	678
BspFNI	CGCG	2 cut(s)	309, 866
BspHI	TCATGA	1 cut(s)	678
BspLI	GGNNCC	3 cut(s)	21, 47, 424
BspPI	GGATC	3 cut(s)	40, 53, 190
BspT107I	GGYRCC	2 cut(s)	19, 422
BsrDI	GCAATG	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	50, 300
BssMI	GATC	2 cut(s)	45, 182
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	783, 793
Bst4CI	ACNGT	2 cut(s)	533, 578
BstACI	GRCGYC	1 cut(s)	423
BstBAI	YACGTR	1 cut(s)	969
BstC8I	GCNNGC	2 cut(s)	381, 385
BstDEI	CTNAG	3 cut(s)	82, 686, 857
BstF5I	GGATG	1 cut(s)	245
BstFNI	CGCG	2 cut(s)	309, 866
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	2 cut(s)	425, 868
BstKTI	GATC	2 cut(s)	48, 185
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	2 cut(s)	45, 182
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 107
BstNI	CCWGG	2 cut(s)	783, 793
BstSCI	CCNGG	2 cut(s)	781, 791
BstSFI	CTRYAG	2 cut(s)	189, 232
BstUI	CGCG	2 cut(s)	309, 866
BstV1I	GCAGC	4 cut(s)	113, 234, 385, 798
BstX2I	RGATCY	2 cut(s)	45, 182
BstYI	RGATCY	2 cut(s)	45, 182
BsuRI	GGCC	1 cut(s)	778
BtsCI	GGATG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	2 cut(s)	381, 385
CciI	TCATGA	1 cut(s)	678
CfoI	GCGC	2 cut(s)	425, 868
Csp6I	GTAC	7 cut(s)	20, 275, 281, 305, 534, 699, 966
CviAII	CATG	3 cut(s)	395, 679, 904
CviQI	GTAC	7 cut(s)	20, 275, 281, 305, 534, 699, 966
DdeI	CTNAG	3 cut(s)	82, 686, 857
DinI	GGCGCC	1 cut(s)	424
DpnI	GATC	2 cut(s)	47, 184
DpnII	GATC	2 cut(s)	45, 182
EaeI	YGGCCR	1 cut(s)	776
Eco130I	CCWWGG	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	378
EcoRII	CCWGG	2 cut(s)	781, 791
EcoT14I	CCWWGG	1 cut(s)	300
EgeI	GGCGCC	1 cut(s)	424
EheI	GGCGCC	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	3 cut(s)	398, 682, 907
FalI	AAGNNNNNCTT	4 cut(s)	169, 201, 544, 576
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	3 cut(s)	394, 678, 903
Fnu4HI	GCNGC	4 cut(s)	102, 223, 399, 787
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	4 cut(s)	102, 223, 399, 787
FspBI	CTAG	3 cut(s)	264, 962, 973
GlaI	GCGC	2 cut(s)	424, 867
GluI	GCNGC	4 cut(s)	102, 223, 399, 787
GsuI	CTGGAG	2 cut(s)	384, 775
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	778
HhaI	GCGC	2 cut(s)	425, 868
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	3 cut(s)	398, 682, 907
Hin6I	GCGC	2 cut(s)	423, 866
HinP1I	GCGC	2 cut(s)	423, 866
HincII	GTYRAC	2 cut(s)	57, 877
HindII	GTYRAC	2 cut(s)	57, 877
HinfI	GANTC	5 cut(s)	13, 485, 717, 760, 845
HpaI	GTTAAC	1 cut(s)	57
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	5 cut(s)	57, 328, 468, 701, 877
Hpy188I	TCNGA	1 cut(s)	621
Hpy188III	TCNNGA	5 cut(s)	269, 548, 679, 714, 893
Hpy8I	GTNNAC	5 cut(s)	57, 328, 468, 701, 877
HpyAV	CCTTC	2 cut(s)	259, 549
HpyCH4III	ACNGT	2 cut(s)	533, 578
HpyCH4IV	ACGT	1 cut(s)	968
HpyCH4V	TGCA	3 cut(s)	379, 458, 929
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 107
HpyF3I	CTNAG	3 cut(s)	82, 686, 857
HpySE526I	ACGT	1 cut(s)	968
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	3 cut(s)	398, 682, 907
HspAI	GCGC	2 cut(s)	423, 866
KasI	GGCGCC	1 cut(s)	422
KpnI	GGTACC	1 cut(s)	23
KspAI	GTTAAC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	45, 182
LmnI	GCTCC	2 cut(s)	365, 794
Lsp1109I	GCAGC	4 cut(s)	113, 234, 385, 798
LweI	GCATC	2 cut(s)	534, 612
MaeI	CTAG	3 cut(s)	264, 962, 973
MaeII	ACGT	1 cut(s)	968
MaeIII	GTNAC	1 cut(s)	764
MalI	GATC	2 cut(s)	47, 184
MboI	GATC	2 cut(s)	45, 182
MboII	GAAGA	3 cut(s)	177, 282, 382
MflI	RGATCY	2 cut(s)	45, 182
MluCI	AATT	9 cut(s)	87, 155, 340, 409, 516, 709, 800, 831, 951
MluI	ACGCGT	1 cut(s)	307
Mly113I	GGCGCC	1 cut(s)	423
MlyI	GAGTC	3 cut(s)	494, 711, 769
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	6 cut(s)	60, 149, 265, 451, 593, 619
MseI	TTAA	4 cut(s)	56, 515, 543, 573
MspR9I	CCNGG	2 cut(s)	783, 793
Mva1269I	GAATGC	1 cut(s)	825
MvaI	CCWGG	2 cut(s)	783, 793
MvnI	CGCG	2 cut(s)	309, 866
MwoI	GCNNNNNNNGC	2 cut(s)	34, 107
NarI	GGCGCC	1 cut(s)	423
NdeII	GATC	2 cut(s)	45, 182
NlaIII	CATG	3 cut(s)	398, 682, 907
NlaIV	GGNNCC	3 cut(s)	21, 47, 424
NmuCI	GTSAC	1 cut(s)	764
PagI	TCATGA	1 cut(s)	678
PctI	GAATGC	1 cut(s)	825
PfeI	GAWTC	2 cut(s)	13, 845
PkrI	GCNGC	4 cut(s)	103, 224, 400, 788
PleI	GAGTC	3 cut(s)	493, 711, 768
PluTI	GGCGCC	1 cut(s)	426
PpsI	GAGTC	3 cut(s)	493, 711, 768
Ppu21I	YACGTR	1 cut(s)	969
PshBI	ATTAAT	2 cut(s)	515, 543
Psp6I	CCWGG	2 cut(s)	781, 791
PspGI	CCWGG	2 cut(s)	781, 791
PspN4I	GGNNCC	3 cut(s)	21, 47, 424
PsrI	GAACNNNNNNTAC	2 cut(s)	845, 877
PsuI	RGATCY	2 cut(s)	45, 182
RsaI	GTAC	7 cut(s)	21, 276, 282, 306, 535, 700, 967
RsaNI	GTAC	7 cut(s)	20, 275, 281, 305, 534, 699, 966
SaqAI	TTAA	4 cut(s)	56, 515, 543, 573
SatI	GCNGC	4 cut(s)	102, 223, 399, 787
Sau3AI	GATC	2 cut(s)	45, 182
SchI	GAGTC	3 cut(s)	494, 711, 769
ScrFI	CCNGG	2 cut(s)	783, 793
SfaNI	GCATC	2 cut(s)	534, 612
SfcI	CTRYAG	2 cut(s)	189, 232
SfoI	GGCGCC	1 cut(s)	424
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	9 cut(s)	87, 155, 340, 409, 516, 709, 800, 831, 951
SspDI	GGCGCC	1 cut(s)	422
SspMI	CTAG	3 cut(s)	264, 962, 973
StyD4I	CCNGG	2 cut(s)	781, 791
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	533, 578
TaiI	ACGT	1 cut(s)	971
TasI	AATT	9 cut(s)	87, 155, 340, 409, 516, 709, 800, 831, 951
TatI	WGTACW	1 cut(s)	533
TfiI	GAWTC	2 cut(s)	13, 845
Tru1I	TTAA	4 cut(s)	56, 515, 543, 573
Tru9I	TTAA	4 cut(s)	56, 515, 543, 573
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	764
TseI	GCWGC	4 cut(s)	101, 222, 398, 786
Tsp45I	GTSAC	1 cut(s)	764
TspDTI	ATGAA	5 cut(s)	241, 282, 580, 920, 946
TspRI	CASTG	1 cut(s)	361
VspI	ATTAAT	2 cut(s)	515, 543
XapI	RAATTY	2 cut(s)	155, 951
XspI	CTAG	3 cut(s)	264, 962, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.