RLG00000026081

Wall-associated receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001114
Physical Location & Seq
Reverse (-)
387953 .. 389854
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026081

Sequence Viewer

Length: 780 bp
ATGATAGAAATTGCACTAGAAGCTAACTCGAAGTTCACAGTTCCTTGCAGCCCTGCTGACATAGTTGGAAAAAGATGTTGGTCCTTGTCCATTGGGACTTCTCGTGATGGTGATATTCCGGAAGGAGTTCTCTTTGAAGCAACAAGTTTTGAGCAGCTGCAGCAACCATCATTTAACCCGAAATCGTTTGTCACATACATACAACCAGTGCCCTTTTCAGTGTTTGCTCGCACAAAACCGGCACTGGAGTACCAACCAAGGAAAGACGGTAAAGTTTGGATTTTACACCGTGTAAAGCTAACTCTAGGTCTTTGCATCTGTTGCTCATTTCTTGTTTTTGGGTTCACTTGGATTGTTAACAGTATTAAGAAGCAAAACTCTGTTATGCTCAAATCCGAATATTTCAAGAAAAATGGACGGTTATTGTTAAAGCAACATATCGATGCCTTACAATATGGAAGCACAAGGATATTTACAGCCGAGGAACTACAGATGGCTACTGAATTTTACAAGAAGAAACACTTCTTTGGTCCAGGAGGAGACGGCGGAAGTACCGTCTATGACAAAGGATTTTTAGTGGAGGAGCCCCAAGTCGAGCATTTTATGAATGATATTACCACTCTTACCAAAATTGGCCATCGAAATTTGGTCAAGTTGTTTGGATGCTGTTTAGAGACTGAAGCTCCCCTTTTGGTTTATGAACTTGCTTCCAATGGAACCCTTTTCGACCACATTCATCATAGTAGAGGGAAAAGTCATTGCCATGGGATACCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EGF EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

260

Amino Acids

29.24

Weight (kDa)

8.56

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 195 - 250 1.8e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 1 cut(s) 546
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 2 cut(s) 503, 643
AcuI CTGAAG 1 cut(s) 699
AfaI GTAC 2 cut(s) 251, 553
AgsI TTSAA 2 cut(s) 137, 406
AjnI CCWGG 1 cut(s) 532
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AluBI AGCT 4 cut(s) 23, 157, 298, 683
AluI AGCT 4 cut(s) 23, 157, 298, 683
Alw26I GTCTC 2 cut(s) 534, 668
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 1 cut(s) 634
ApeKI GCWGC 4 cut(s) 48, 154, 157, 160
ApoI RAATTY 2 cut(s) 503, 643
Asp700I GAANNNNTTC 2 cut(s) 126, 521
AspS9I GGNCC 2 cut(s) 81, 530
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 2 cut(s) 81, 530
BaeGI GKGCMC 1 cut(s) 213
BaeI ACNNNNGTAYC 2 cut(s) 233, 266
BalI TGGCCA 1 cut(s) 636
BanII GRGCYC 1 cut(s) 588
BauI CACGAG 1 cut(s) 102
BbvI GCAGC 4 cut(s) 60, 144, 166, 172
BccI CCATC 4 cut(s) 101, 175, 487, 645
BceAI ACGGC 1 cut(s) 559
BciT130I CCWGG 1 cut(s) 534
BciVI GTATCC 1 cut(s) 762
BcoDI GTCTC 2 cut(s) 534, 668
BfaI CTAG 2 cut(s) 17, 305
BfmI CTRYAG 2 cut(s) 158, 488
BfuI GTATCC 1 cut(s) 762
BisI GCNGC 4 cut(s) 49, 155, 158, 161
BlsI GCNGC 4 cut(s) 50, 156, 159, 162
Bme1390I CCNGG 1 cut(s) 534
Bme18I GGWCC 2 cut(s) 81, 530
BmgT120I GGNCC 2 cut(s) 81, 530
BmiI GGNNCC 2 cut(s) 585, 718
BmrFI CCNGG 1 cut(s) 534
BmsI GCATC 3 cut(s) 324, 433, 653
BpmI CTGGAG 1 cut(s) 266
Bsa29I ATCGAT 1 cut(s) 441
BsaJI CCNNGG 3 cut(s) 257, 480, 763
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 667, 697
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 2 cut(s) 206, 249
Bse3DI GCAATG 1 cut(s) 757
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 1 cut(s) 534
BseCI ATCGAT 1 cut(s) 441
BseDI CCNNGG 3 cut(s) 257, 480, 763
BseGI GGATG 1 cut(s) 668
BseMI GCAATG 1 cut(s) 757
BseNI ACTGG 2 cut(s) 206, 249
BseRI GAGGAG 2 cut(s) 552, 596
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 4 cut(s) 60, 144, 166, 172
BshFI GGCC 1 cut(s) 636
BshVI ATCGAT 1 cut(s) 441
BsiSI CCGG 2 cut(s) 119, 239
BslFI GGGAC 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 534, 668
BsmBI CGTCTC 1 cut(s) 534
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 1 cut(s) 636
Bsp1286I GDGCHC 2 cut(s) 213, 588
Bsp13I TCCGGA 1 cut(s) 118
Bsp19I CCATGG 1 cut(s) 763
BspACI CCGC 1 cut(s) 546
BspANI GGCC 1 cut(s) 636
BspDI ATCGAT 1 cut(s) 441
BspEI TCCGGA 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 585, 718
BspMAI CTGCAG 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 757
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 2 cut(s) 206, 249
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 3 cut(s) 257, 480, 763
BssSI CACGAG 1 cut(s) 102
BssT1I CCWWGG 2 cut(s) 257, 763
Bst2BI CACGAG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 6 cut(s) 40, 269, 290, 362, 420, 556
BstAPI GCANNNNNTGC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 229
BstDSI CCRYGG 1 cut(s) 763
BstF5I GGATG 1 cut(s) 668
BstMAI GTCTC 2 cut(s) 534, 668
BstMWI GCNNNNNNNGC 3 cut(s) 20, 160, 321
BstNI CCWGG 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 532
BstSFI CTRYAG 2 cut(s) 158, 488
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 4 cut(s) 60, 144, 166, 172
Bsu15I ATCGAT 1 cut(s) 441
BsuI GTATCC 1 cut(s) 762
BsuRI GGCC 1 cut(s) 636
BsuTUI ATCGAT 1 cut(s) 441
BtgI CCRYGG 1 cut(s) 763
BtsCI GGATG 1 cut(s) 668
BtsIMutI CAGTG 3 cut(s) 213, 225, 242
Cac8I GCNNGC 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 81, 530
ClaI ATCGAT 1 cut(s) 441
Csp6I GTAC 2 cut(s) 250, 552
CviAII CATG 1 cut(s) 764
CviJI RGCY 9 cut(s) 23, 51, 157, 298, 479, 497, 586, 636, 683
CviKI_1 RGCY 9 cut(s) 23, 51, 157, 298, 479, 497, 586, 636, 683
CviQI GTAC 2 cut(s) 250, 552
EaeI YGGCCR 1 cut(s) 634
EciI GGCGGA 1 cut(s) 561
Eco130I CCWWGG 2 cut(s) 257, 763
Eco24I GRGCYC 1 cut(s) 588
Eco47I GGWCC 2 cut(s) 81, 530
Eco57I CTGAAG 1 cut(s) 699
EcoRII CCWGG 1 cut(s) 532
EcoT14I CCWWGG 2 cut(s) 257, 763
EcoT38I GRGCYC 1 cut(s) 588
ErhI CCWWGG 2 cut(s) 257, 763
Esp3I CGTCTC 1 cut(s) 534
FaeI CATG 1 cut(s) 767
FalI AAGNNNNNCTT 4 cut(s) 506, 538, 672, 704
FaqI GGGAC 1 cut(s) 109
FatI CATG 1 cut(s) 763
Fnu4HI GCNGC 4 cut(s) 49, 155, 158, 161
FokI GGATG 1 cut(s) 675
FriOI GRGCYC 1 cut(s) 588
Fsp4HI GCNGC 4 cut(s) 49, 155, 158, 161
FspBI CTAG 2 cut(s) 17, 305
GluI GCNGC 4 cut(s) 49, 155, 158, 161
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 1 cut(s) 636
HapII CCGG 2 cut(s) 119, 239
Hin1II CATG 1 cut(s) 767
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HpaI GTTAAC 1 cut(s) 358
HpaII CCGG 2 cut(s) 119, 239
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 3 cut(s) 36, 345, 358
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 3 cut(s) 104, 119, 406
Hpy8I GTNNAC 3 cut(s) 36, 345, 358
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 6 cut(s) 40, 269, 290, 362, 420, 556
HpyCH4V TGCA 4 cut(s) 14, 48, 160, 315
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 160, 321
Hsp92II CATG 1 cut(s) 767
Kpn2I TCCGGA 1 cut(s) 118
KspAI GTTAAC 1 cut(s) 358
LmnI GCTCC 2 cut(s) 583, 688
LpnPI CCDG 7 cut(s) 66, 132, 219, 230, 252, 519, 546
Lsp1109I GCAGC 4 cut(s) 60, 144, 166, 172
LweI GCATC 3 cut(s) 324, 433, 653
MaeI CTAG 2 cut(s) 17, 305
MaeIII GTNAC 1 cut(s) 190
MboII GAAGA 1 cut(s) 526
MhlI GDGCHC 2 cut(s) 213, 588
MlsI TGGCCA 1 cut(s) 636
MluCI AATT 4 cut(s) 9, 503, 630, 643
MluNI TGGCCA 1 cut(s) 636
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 4 cut(s) 475, 530, 574, 740
Mox20I TGGCCA 1 cut(s) 636
MroI TCCGGA 1 cut(s) 118
MroXI GAANNNNTTC 2 cut(s) 126, 521
MscI TGGCCA 1 cut(s) 636
MseI TTAA 5 cut(s) 174, 357, 366, 428, 778
MslI CAYNNNNRTG 2 cut(s) 441, 762
Msp20I TGGCCA 1 cut(s) 636
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 2 cut(s) 119, 239
MspR9I CCNGG 1 cut(s) 534
MvaI CCWGG 1 cut(s) 534
MwoI GCNNNNNNNGC 3 cut(s) 20, 160, 321
NcoI CCATGG 1 cut(s) 763
NlaIII CATG 1 cut(s) 767
NlaIV GGNNCC 2 cut(s) 585, 718
NmeAIII GCCGAG 1 cut(s) 505
NmuCI GTSAC 1 cut(s) 190
PdmI GAANNNNTTC 2 cut(s) 126, 521
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 4 cut(s) 50, 156, 159, 162
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 2 cut(s) 585, 718
PspPI GGNCC 2 cut(s) 81, 530
PstI CTGCAG 1 cut(s) 162
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 2 cut(s) 251, 553
RsaNI GTAC 2 cut(s) 250, 552
RseI CAYNNNNRTG 2 cut(s) 441, 762
SaqAI TTAA 5 cut(s) 174, 357, 366, 428, 778
SatI GCNGC 4 cut(s) 49, 155, 158, 161
Sau96I GGNCC 2 cut(s) 81, 530
ScrFI CCNGG 1 cut(s) 534
SduI GDGCHC 2 cut(s) 213, 588
SetI ASST 5 cut(s) 25, 159, 300, 310, 685
SfaNI GCATC 3 cut(s) 324, 433, 653
SfcI CTRYAG 2 cut(s) 158, 488
SinI GGWCC 2 cut(s) 81, 530
SmiMI CAYNNNNRTG 2 cut(s) 441, 762
Sse9I AATT 4 cut(s) 9, 503, 630, 643
SsiI CCGC 1 cut(s) 546
SspI AATATT 1 cut(s) 401
SspMI CTAG 2 cut(s) 17, 305
StyD4I CCNGG 1 cut(s) 532
StyI CCWWGG 2 cut(s) 257, 763
TaaI ACNGT 6 cut(s) 40, 269, 290, 362, 420, 556
TaqI TCGA 5 cut(s) 29, 441, 594, 640, 726
TasI AATT 4 cut(s) 9, 503, 630, 643
Tru1I TTAA 5 cut(s) 174, 357, 366, 428, 778
Tru9I TTAA 5 cut(s) 174, 357, 366, 428, 778
TscAI CASTG 3 cut(s) 213, 225, 249
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 4 cut(s) 48, 154, 157, 160
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 3 cut(s) 620, 714, 725
TspRI CASTG 3 cut(s) 213, 225, 249
VpaK11BI GGWCC 2 cut(s) 81, 530
XapI RAATTY 2 cut(s) 503, 643
XmnI GAANNNNTTC 2 cut(s) 126, 521
XspI CTAG 2 cut(s) 17, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.