Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

16759460 .. 16769407

Gene Structure 9948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19850.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4182 bp

ATGGATCTTCTCAAGGACAACAACTTCCGCGTCTCCCAGGGCGCTCTTCAGGCCCTCGCCTCCGCCGCCGTCCTCTCCGGCGACCATCTCAAGCTTCATTTCAATGCGCTTGTCCCCGCCGTCGTCGAGCGCCTCGGTGATGCCAAGCAGCCCGTTCGCGACGCCGCCAGGAGGCTACTGCTTACTCTCATGGAGGTTTCTTCTCCGACGCTCATTGTTGAAAGAGCTGGTACTTATGCCTGGGCACACAAAAGCTGGAGAGTTAGAGAAGAGTTTGCACGAACTGTGACATCAGCAATTGGACTTTTTGCATCAACTGAACTTCCTCTTCAGCGTGCTATACTTCCTCCCATTCTGCAAATGTTAACTGATTCAAATCCTGGTGTAAGGGATGCAGCTATATTGTGCATTGAGGAGATGTATACACAGGCAGGGACTCAGTTCCGTGATGAACTTCAGCGGCACAATCTTCCCATGTCCATGGTGAAAGATATTAATGCAAGGCTTGAGAGGATTGAACCTAAGAATCGCTCATCAGATGGACTTAGTGCTGTAGAAACAAAGCCCTTGAGCCATAACCCAAAGAGAAGTAGTCCAAAGGCCAAGAGTTCCTCAAGGGAGGTTTCTCTATTTGGAGGGGAAACTGATCCTAGTGTAAAATCTGTTGACCCTATAAAAGTTTATTCTGAAAAGGAACTAATAAGAGAAGTGGAGAAAATAGCTTCTACCCTTGTACCCGAGAAAGACTGGTCGATTCGGATCGCTGCAATGCAAAGAATAGAAGGGCTTGTATACGGAGGTGCTGCTGATTATCAATGCTTTCGGGGACTTTTGAAGCAACTTGTTAATCCTCTGAGTACACAGTTATCTGATCGAAGGTCTAGCATAGTGAAGCAGGCTTGCCATCTGTTATGCTTTTTGTCGAAGGAGCTATTGGGAGATTTTGAGGCATATGCTGAGATTTTCATTCCAGTCCTTTTCAAGCTGGTTGTGATCACTGTACTTGTAATTCAAGAGTCTGCAGATAACTGCATAAAAACGATGTTGCGTAACTGTAAAGTTGCTCGGGTGCTTCCTCGTATTGCGGATTGTGCTAAGAATGACCGTAATGCAATACTTCGAGCAAGGTGTTGTGACTATGCACTGTTGATACTAGAGTATTGGGCCGATGAACCTGAAATACAGAGATCAGCAGATCTGTATGAAGATCTAATAAGATGTTGTGTTGCAGATGCAATGAGCGAGGTCCGTTCAACTGCAAGAATGTGCTATAGAATGTTTTCAAAAACTTGGCCAGAGCGTTCCCGACGACTATTTTCACTCTTTGATCCTGTTATTCAAAGGTTAATCAATGAAGAGGATGGGGGGATACATAGGCGACATGCTTCTCCTTCTGTTCGTGATAGGGGTACACCAGTCTCATTTACTCCTCAGCCATCTGCTTCTTCAAATCTACCTGGATATGGAACTTCTGCTATTGTTGCAATGGATAGAAGTTCAAGTTTATCCTCTGGGACTTCTTTCTCATCAGGACTTCATCTGTCACAAGCGAAGGCAGTTGGTAAAGGTTCTGAGCGTAGTCTGGAAAGTGTGTTGCATGCAAGCAAACAGAAGGTCAGTGCAATCGAAAGCATGCTTAGAGGTTTGGAGTTATCTGACAGACACAATTCTTCAACTCTGCGGTCATCTAGTCTGGATCTAGGAGTTGACCCTCCATCATCTCGTGACCCACCATTCCCTGCTGCTGTCCCAGCTTCTAATCATTTTTCAAACTCTCTAATGACAGATTCAACCACCTCAAGTAACAAAGGTAGTAGCCGCAATGGTGGCCTGGTTTTGTCTGATATCATAACTCAAATTCAAGCTTCCAAAGATTCTGCTAAATCATCATATCGCAGTAATTTATCATCTGAAACACTGCCAACTGTTTCTTCTTACACCATGAAGAGGGCTTCTGATAGAATCCACGAAAGGGGTTTCATTGAAGAGAATACTGAAACTAGGGACGCTAGGCGAACTGTGAATCATCAAGCTGAAAGGCATTATTTGGATACATCTCACAGGGATGGAAACTTTAGGGATTCACATAGTAATCATATTCCCAATTTTCAAAGGCCCCTCTTACGAAAGAATACGACAGGAAGGATATCTGCAGGCAGGAGGAGAAGTTTTGATGATAGCCAGCTCTCACAGGAGATGGCAAATTATGTAGAAGGTCCAGCATCGCTAAATGATGCTCTGAGTGAAGGATTGAGTCCATCTTCAGACTGGTCAGCTAGGGTTGCGGCATTTAATTATCTTCGGTCTTTGCTGCAGCAAGGCCAAAAAGGAATTCAAGAAGTTATACAGAGTTTTGAGAAAGTAATGAAATTGTTTTTCCAACACTTGGATGATCCACACCACAAAGTTGCACAGGCAGCCCTTTCAACACTTGCAGATGTTATTCCATCTTGCCGTAAACCCTTTGAAAGTTACATGGAAAGGATCCTACCTCATGTTTTCTCACGGTTAATTGACCCGAAGGAGTCAGTTAGGCATCCTTGCTCAACAACTTTGGTCATTGTTGGCAAGACATATAGTGTGGATTCCCTCTTACCTGCTTTGCTTCGTTCACTAGATGAACAGCGATCACCAAAGGCTAAATTAGCTGTTATTGAGTTTTCTATTGGTTCATTTAACAAGCATTCAGTGAATCCTGAAGGTTCTGGCAACAGTGGCATTCTAAAATTATGGCTTTCGAAGTTGGCACCATTGGTCCATGATAAAAACACTAAACTAAAGGAGGCAGCTATTACATGCATAATCTCTGTATACTCCCACTTTGATCCAACATCTGTGTTGAATTTTATTCTGAGCTTGTCAGTTGAAGAACAAAATTCTTTGAGAAGAGCCTTGAAACAAAAAACTCCTCGCATTGAAGTGGACCTTATGAACTTTCTGCAAAACAAGAAAGAGCGACAACGCAAGTCTTCTTATGATCCGTCTGATGCAGTTGGAACATCTTCCGAAGAAGGATATGTTAGTGCCTCAAAGAAGAGTCATTTCTTCAGTAGGTACTCTGCTGGTTCAGTTGATAGTGATGGTGGCAGGAAGTGGAGTTCAACCCAAGAAACAACCTTGGTCACTGGCTCTGTTGGCCAAGCTGCTTCTGATCAAACTGGGGAGAACTTGTATCAGAATTTTGAGTCTGGTTGTAATATTGATGTTCTTAATTCAAAGTCCAAGGATGCAACCTACATGGTTAGTGCCATGACTCAGAACTCTGGTTCCTGGACTAGCCCTCTGGACAATGGCGATGGTAGAGTAAACTTTGAAAGTTTGCGTTCTCATTCTCTGGATGTTAATGGGATTTTGAACATGGACCATATTGGGGCTGCTGAGAGCATTGGGCATAGTGAAGCTTCCACTGACTTGGACCAGAATCACCTCCAACTTCAAGCTTCGAAGGTTAATTCCATTCCAGACTCGAGTCCCAGCATTCCTCAAATACTCCACTTGATTGGCACTGGAACTGAGGAAAGTCCTGTGGAAAGTAAGCGTGGTGCTCTTCAACAGCTAATCGAAGCTTCTATAACTAATGACCATTCTATTTGGACAAAGTACTTCAATCAAATTTTGACAGTTGTACTTGAGGTGCTGGATGATTTTGACTCTTCTATCCGGGAGCTTTCTCTTTCATTGATTATTGAAATGCTCAAGAACCAGAAAGAGGCAATTGAAGATTCTATTGAGATTGTAATTGAGAAGCTGCTGCATGTTACGAAAGATGTAGTTCCCCAGGTTGCAAATGAATCAGAGCACTGCTTGAGTATCGTTTTGTCGCAGTATGATCCATTCAGATGTTTAAGTGTCATTGTCCCTTTATTGGTAACTGAAGATGAGAAAACTCTCGTTACTTGCATAAACTGTTTGACAAAGCTTGTAGGCAGGCTTTCAGTGGAGGAACTGATGGCTCAATTACCATCCTTTTTGCCTGCACTATTTGAAGCATTTGGAAACCAGAGTGCTGATGTTCGCAAGACTGTCGTCTTCTGTCTAGTCGATATATATATTATGCTTGGAAAATCATTCTTGCCATATCTGGAGGGGCTCAACAGCACACAGTTACGCTTGGTGACTATTTATGCTAATCGGATTTCACAGGCGAGGACAGGCGCGCCGTTAGACACTAACCATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

1394

Amino Acids

154.29

Weight (kDa)

6.77

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CEP104-like_TOG	PF21040	10 - 180	1.7e-09	Centrosomal protein CEP104-like, TOG domain
XMAP215_CLASP_TOG	PF21041	11 - 213	1.6e-10	XMAP215/Dis1/CLASP, TOG domain
HEAT_GCN1_C	PF25786	18 - 116	1.4e-06	GCN1-like, C-terminal HEAT repeats
CLASP_N	PF12348	280 - 496	1.4e-48	CLASP N terminal
CLASP_N	PF12348	798 - 986	9.5e-08	CLASP N terminal
CEP104-like_TOG	PF21040	800 - 936	9.4e-09	Centrosomal protein CEP104-like, TOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2605
AccB1I	GGYRCC	1 cut(s)	2746
AccB7I	CCANNNNNTGG	1 cut(s)	2386
AccI	GTMKAC	3 cut(s)	422, 792, 2811
AccII	CGCG	3 cut(s)	30, 159, 4157
AcoI	YGGCCR	2 cut(s)	1292, 3136
AcsI	RAATTY	6 cut(s)	1857, 2331, 2842, 2875, 3178, 3612
AcuI	CTGAAG	7 cut(s)	32, 314, 440, 2247, 2718, 3031, 3894
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	8 cut(s)	232, 735, 859, 1002, 1411, 3056, 3602, 3627
AfiI	CCNNNNNNNGG	8 cut(s)	171, 1463, 1947, 1972, 2386, 3370, 3709, 3865
AjnI	CCWGG	8 cut(s)	36, 167, 239, 379, 1456, 1830, 3269, 3777
AjuI	GAANNNNNNNTTGG	6 cut(s)	917, 949, 1915, 1947, 2316, 2348
AloI	GAACNNNNNNTCC	4 cut(s)	3082, 3114, 3251, 3283
Alw21I	GWGCWC	2 cut(s)	3547, 3801
Alw26I	GTCTC	2 cut(s)	37, 1423
Ama87I	CYCGRG	3 cut(s)	737, 1065, 3466
AoxI	GGCC	8 cut(s)	51, 600, 1164, 1292, 1828, 2114, 2320, 3136
ApoI	RAATTY	6 cut(s)	1857, 2331, 2842, 2875, 3178, 3612
ArsI	GACNNNNNNTTYG	2 cut(s)	1599, 1631
AscI	GGCGCGCC	1 cut(s)	4155
AseI	ATTAAT	1 cut(s)	495
Asp700I	GAANNNNTTC	2 cut(s)	1279, 3001
AspLEI	GCGC	5 cut(s)	44, 109, 132, 4157, 4159
AspS9I	GGNCC	9 cut(s)	52, 1164, 1246, 2115, 2216, 2755, 2923, 3361, 3415
AsuC2I	CCSGG	1 cut(s)	3662
AsuHPI	GGTGA	5 cut(s)	149, 496, 2622, 3416, 4126
AsuII	TTCGAA	2 cut(s)	2738, 3443
AvaI	CYCGRG	3 cut(s)	737, 1065, 3466
AvaII	GGWCC	6 cut(s)	1246, 2216, 2755, 2923, 3361, 3415
BaeGI	GKGCMC	1 cut(s)	247
BaeI	ACNNNNGTAYC	6 cut(s)	717, 750, 1142, 1175, 1401, 1434
BalI	TGGCCA	2 cut(s)	1294, 3138
BamHI	GGATCC	1 cut(s)	2484
BanI	GGYRCC	1 cut(s)	2746
BanII	GRGCYC	1 cut(s)	4092
BauI	CACGAG	1 cut(s)	1722
BbsI	GAAGAC	2 cut(s)	2961, 4021
Bbv12I	GWGCWC	2 cut(s)	3547, 3801
BbvCI	CCTCAGC	1 cut(s)	1431
BceAI	ACGGC	4 cut(s)	53, 104, 2439, 4144
BcgI	CGANNNNNNTGC	4 cut(s)	137, 171, 4006, 4040
BciT130I	CCWGG	8 cut(s)	38, 169, 241, 381, 1458, 1832, 3271, 3779
BciVI	GTATCC	2 cut(s)	1362, 2044
BclI	TGATCA	2 cut(s)	993, 3151
BcnI	CCSGG	1 cut(s)	3662
BcoDI	GTCTC	2 cut(s)	37, 1423
BfmI	CTRYAG	5 cut(s)	552, 1020, 1270, 2151, 2312
BfoI	RGCGCY	2 cut(s)	45, 133
BfuAI	ACCTGC	1 cut(s)	2605
BfuI	GTATCC	2 cut(s)	1362, 2044
BglII	AGATCT	2 cut(s)	1195, 1207
BmcAI	AGTACT	1 cut(s)	3602
Bme1390I	CCNGG	9 cut(s)	38, 169, 241, 381, 1458, 1832, 3271, 3662, 3779
Bme18I	GGWCC	6 cut(s)	1246, 2216, 2755, 2923, 3361, 3415
BmeT110I	CYCGRG	3 cut(s)	737, 1065, 3466
BmgT120I	GGNCC	9 cut(s)	52, 1164, 1246, 2115, 2216, 2755, 2923, 3361, 3415
BmiI	GGNNCC	4 cut(s)	2117, 2486, 2748, 3268
BmrFI	CCNGG	9 cut(s)	38, 169, 241, 381, 1458, 1832, 3271, 3662, 3779
BmrI	ACTGGG	1 cut(s)	3168
BmsI	GCATC	9 cut(s)	130, 320, 382, 1222, 2224, 2231, 2545, 2977, 3217
BmuI	ACTGGG	1 cut(s)	3168
BoxI	GACNNNNGTC	2 cut(s)	3468, 4025
BpiI	GAAGAC	2 cut(s)	2961, 4021
BpmI	CTGGAG	2 cut(s)	277, 4103
Bpu10I	CCTNAGC	1 cut(s)	1431
Bpu14I	TTCGAA	2 cut(s)	2738, 3443
BpuEI	CTTGAG	8 cut(s)	74, 527, 589, 598, 1783, 3650, 3680, 3826
BpuMI	CCSGG	1 cut(s)	3662
BsaBI	GATNNNNATC	2 cut(s)	375, 758
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	8 cut(s)	36, 37, 133, 240, 480, 3117, 3222, 3777
BsaXI	ACNNNNNCTCC	4 cut(s)	2152, 2182, 3155, 3185
Bsc4I	CCNNNNNNNGG	8 cut(s)	171, 1463, 1947, 1972, 2386, 3370, 3709, 3865
Bse1I	ACTGG	7 cut(s)	752, 971, 1415, 2273, 3130, 3163, 3511
Bse3DI	GCAATG	4 cut(s)	774, 1242, 1491, 1828
Bse8I	GATNNNNATC	2 cut(s)	375, 758
BseBI	CCWGG	8 cut(s)	38, 169, 241, 381, 1458, 1832, 3271, 3779
BseDI	CCNNGG	8 cut(s)	36, 37, 133, 240, 480, 3117, 3222, 3777
BseGI	GGATG	9 cut(s)	397, 1366, 2071, 2395, 2536, 3232, 3343, 3646, 3962
BseJI	GATNNNNATC	2 cut(s)	375, 758
BseLI	CCNNNNNNNGG	8 cut(s)	171, 1463, 1947, 1972, 2386, 3370, 3709, 3865
BseMI	GCAATG	4 cut(s)	774, 1242, 1491, 1828
BseNI	ACTGG	7 cut(s)	752, 971, 1415, 2273, 3130, 3163, 3511
BsePI	GCGCGC	1 cut(s)	4155
BseRI	GAGGAG	4 cut(s)	428, 1419, 2176, 2898
BseSI	GKGCMC	1 cut(s)	247
BseYI	CCCAGC	2 cut(s)	1750, 3473
BsgI	GTGCAG	1 cut(s)	3960
Bsh1236I	CGCG	3 cut(s)	30, 159, 4157
BshFI	GGCC	8 cut(s)	53, 602, 1166, 1294, 1830, 2116, 2322, 3138
BshNI	GGYRCC	1 cut(s)	2746
BsiHKAI	GWGCWC	2 cut(s)	3547, 3801
BsiHKCI	CYCGRG	3 cut(s)	737, 1065, 3466
BsiSI	CCGG	2 cut(s)	78, 3661
BslFI	GGGAC	8 cut(s)	98, 448, 840, 1528, 1733, 2018, 3456, 3842
BslI	CCNNNNNNNGG	8 cut(s)	171, 1463, 1947, 1972, 2386, 3370, 3709, 3865
BsmAI	GTCTC	2 cut(s)	37, 1423
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	8 cut(s)	98, 448, 840, 1528, 1733, 2018, 3456, 3842
BsmI	GAATGC	3 cut(s)	2683, 2718, 3477
BsnI	GGCC	8 cut(s)	53, 602, 1166, 1294, 1830, 2116, 2322, 3138
BsoBI	CYCGRG	3 cut(s)	737, 1065, 3466
Bsp119I	TTCGAA	2 cut(s)	2738, 3443
Bsp1286I	GDGCHC	4 cut(s)	247, 3547, 3801, 4092
Bsp19I	CCATGG	1 cut(s)	480
Bsp68I	TCGCGA	1 cut(s)	159
BspANI	GGCC	8 cut(s)	53, 602, 1166, 1294, 1830, 2116, 2322, 3138
BspFNI	CGCG	3 cut(s)	30, 159, 4157
BspLI	GGNNCC	4 cut(s)	2117, 2486, 2748, 3268
BspMAI	CTGCAG	3 cut(s)	1024, 2155, 2316
BspMI	ACCTGC	1 cut(s)	2605
BspQI	GCTCTTC	3 cut(s)	51, 2881, 3552
BspT104I	TTCGAA	2 cut(s)	2738, 3443
BspT107I	GGYRCC	1 cut(s)	2746
BsrDI	GCAATG	4 cut(s)	774, 1242, 1491, 1828
BsrI	ACTGG	7 cut(s)	752, 971, 1415, 2273, 3130, 3163, 3511
BssECI	CCNNGG	8 cut(s)	36, 37, 133, 240, 480, 3117, 3222, 3777
BssHII	GCGCGC	1 cut(s)	4155
BssNAI	GTATAC	3 cut(s)	423, 793, 2812
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	1722
BssT1I	CCWWGG	3 cut(s)	480, 3117, 3222
Bst1107I	GTATAC	3 cut(s)	423, 793, 2812
Bst2BI	CACGAG	1 cut(s)	1722
Bst2UI	CCWGG	8 cut(s)	38, 169, 241, 381, 1458, 1832, 3271, 3779
BstACI	GRCGYC	1 cut(s)	162
BstBI	TTCGAA	2 cut(s)	2738, 3443
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	9 cut(s)	397, 1366, 2071, 2395, 2536, 3232, 3343, 3646, 3962
BstFNI	CGCG	3 cut(s)	30, 159, 4157
BstH2I	RGCGCY	2 cut(s)	45, 133
BstHHI	GCGC	5 cut(s)	44, 109, 132, 4157, 4159
BstMAI	GTCTC	2 cut(s)	37, 1423
BstNI	CCWGG	8 cut(s)	38, 169, 241, 381, 1458, 1832, 3271, 3779
BstNSI	RCATGY	5 cut(s)	1385, 1601, 1636, 2799, 3758
BstPAI	GACNNNNGTC	2 cut(s)	3468, 4025
BstSCI	CCNGG	9 cut(s)	36, 167, 239, 379, 1456, 1830, 3269, 3660, 3777
BstSFI	CTRYAG	5 cut(s)	552, 1020, 1270, 2151, 2312
BstSLI	GKGCMC	1 cut(s)	247
BstUI	CGCG	3 cut(s)	30, 159, 4157
BstV2I	GAAGAC	2 cut(s)	2961, 4021
BstX2I	RGATCY	5 cut(s)	4, 1195, 1207, 1696, 2484
BstXI	CCANNNNNNTGG	3 cut(s)	481, 3412, 3500
BstYI	RGATCY	5 cut(s)	4, 1195, 1207, 1696, 2484
BstZ17I	GTATAC	3 cut(s)	423, 793, 2812
BsuI	GTATCC	2 cut(s)	1362, 2044
BsuRI	GGCC	8 cut(s)	53, 602, 1166, 1294, 1830, 2116, 2322, 3138
BtgI	CCRYGG	1 cut(s)	480
BtgZI	GCGATG	2 cut(s)	2208, 3309
BtsCI	GGATG	9 cut(s)	397, 1366, 2071, 2395, 2536, 3232, 3343, 3646, 3962
BtsI	GCAGTG	2 cut(s)	1916, 3799
BtuMI	TCGCGA	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	2605
CfoI	GCGC	5 cut(s)	44, 109, 132, 4157, 4159
Cfr13I	GGNCC	9 cut(s)	52, 1164, 1246, 2115, 2216, 2755, 2923, 3361, 3415
CseI	GACGC	4 cut(s)	19, 170, 217, 2015
Csp6I	GTAC	8 cut(s)	231, 734, 858, 1001, 1410, 3055, 3601, 3626
CviQI	GTAC	8 cut(s)	231, 734, 858, 1001, 1410, 3055, 3601, 3626
EaeI	YGGCCR	2 cut(s)	1292, 3136
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	3 cut(s)	480, 3117, 3222
Eco24I	GRGCYC	1 cut(s)	4092
Eco32I	GATATC	2 cut(s)	1846, 2148
Eco47I	GGWCC	6 cut(s)	1246, 2216, 2755, 2923, 3361, 3415
Eco57I	CTGAAG	7 cut(s)	32, 314, 440, 2247, 2718, 3031, 3894
Eco88I	CYCGRG	3 cut(s)	737, 1065, 3466
EcoO109I	RGGNCCY	2 cut(s)	52, 2115
EcoRI	GAATTC	1 cut(s)	2331
EcoRII	CCWGG	8 cut(s)	36, 167, 239, 379, 1456, 1830, 3269, 3777
EcoRV	GATATC	2 cut(s)	1846, 2148
EcoT14I	CCWWGG	3 cut(s)	480, 3117, 3222
EcoT22I	ATGCAT	1 cut(s)	2801
EcoT38I	GRGCYC	1 cut(s)	4092
ErhI	CCWWGG	3 cut(s)	480, 3117, 3222
Esp3I	CGTCTC	1 cut(s)	37
FalI	AAGNNNNNCTT	2 cut(s)	2910, 2942
FaqI	GGGAC	8 cut(s)	98, 448, 840, 1528, 1733, 2018, 3456, 3842
FauI	CCCGC	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	952
FbaI	TGATCA	2 cut(s)	993, 3151
FblI	GTMKAC	3 cut(s)	422, 792, 2811
FokI	GGATG	9 cut(s)	404, 1373, 2078, 2402, 2523, 3239, 3350, 3653, 3949
FriOI	GRGCYC	1 cut(s)	4092
GlaI	GCGC	5 cut(s)	43, 108, 131, 4156, 4158
GsaI	CCCAGC	2 cut(s)	1754, 3477
GsuI	CTGGAG	2 cut(s)	277, 4103
HaeII	RGCGCY	2 cut(s)	45, 133
HaeIII	GGCC	8 cut(s)	53, 602, 1166, 1294, 1830, 2116, 2322, 3138
HapII	CCGG	2 cut(s)	78, 3661
HgaI	GACGC	4 cut(s)	19, 170, 217, 2015
HhaI	GCGC	5 cut(s)	44, 109, 132, 4157, 4159
Hin1I	GRCGYC	1 cut(s)	162
Hin6I	GCGC	5 cut(s)	42, 107, 130, 4155, 4157
HinP1I	GCGC	5 cut(s)	42, 107, 130, 4155, 4157
HincII	GTYRAC	3 cut(s)	366, 667, 1708
HindII	GTYRAC	3 cut(s)	366, 667, 1708
HindIII	AAGCTT	6 cut(s)	92, 1863, 3399, 3438, 3564, 3917
HpaI	GTTAAC	1 cut(s)	366
HpaII	CCGG	2 cut(s)	78, 3661
HphI	GGTGA	5 cut(s)	149, 496, 2622, 3416, 4126
Hpy99I	CGWCG	5 cut(s)	125, 128, 164, 211, 1311
Hsp92I	GRCGYC	1 cut(s)	162
HspAI	GCGC	5 cut(s)	42, 107, 130, 4155, 4157
Ksp22I	TGATCA	2 cut(s)	993, 3151
KspAI	GTTAAC	1 cut(s)	366
LguI	GCTCTTC	3 cut(s)	51, 2881, 3552
LmnI	GCTCC	2 cut(s)	928, 3664
LweI	GCATC	9 cut(s)	130, 320, 382, 1222, 2224, 2231, 2545, 2977, 3217
MfeI	CAATTG	2 cut(s)	297, 3714
MflI	RGATCY	5 cut(s)	4, 1195, 1207, 1696, 2484
MhlI	GDGCHC	4 cut(s)	247, 3547, 3801, 4092
MlsI	TGGCCA	2 cut(s)	1294, 3138
MluNI	TGGCCA	2 cut(s)	1294, 3138
MmeI	TCCRAC	5 cut(s)	230, 2404, 2852, 2974, 3454
Mox20I	TGGCCA	2 cut(s)	1294, 3138
Mph1103I	ATGCAT	1 cut(s)	2801
MroXI	GAANNNNTTC	2 cut(s)	1279, 3001
MscI	TGGCCA	2 cut(s)	1294, 3138
MslI	CAYNNNNRTG	6 cut(s)	102, 479, 2064, 2388, 2918, 3838
Msp20I	TGGCCA	2 cut(s)	1294, 3138
MspA1I	CMGCKG	1 cut(s)	460
MspI	CCGG	2 cut(s)	78, 3661
MspR9I	CCNGG	9 cut(s)	38, 169, 241, 381, 1458, 1832, 3271, 3662, 3779
MunI	CAATTG	2 cut(s)	297, 3714
Mva1269I	GAATGC	3 cut(s)	2683, 2718, 3477
MvaI	CCWGG	8 cut(s)	38, 169, 241, 381, 1458, 1832, 3271, 3779
MvnI	CGCG	3 cut(s)	30, 159, 4157
NciI	CCSGG	1 cut(s)	3662
NcoI	CCATGG	1 cut(s)	480
NdeI	CATATG	1 cut(s)	952
NlaIV	GGNNCC	4 cut(s)	2117, 2486, 2748, 3268
NmuCI	GTSAC	6 cut(s)	286, 1133, 1542, 1724, 3121, 4114
NruI	TCGCGA	1 cut(s)	159
NsiI	ATGCAT	1 cut(s)	2801
NspI	RCATGY	5 cut(s)	1385, 1601, 1636, 2799, 3758
NspV	TTCGAA	2 cut(s)	2738, 3443
PaeI	GCATGC	2 cut(s)	1601, 1636
PaeR7I	CTCGAG	1 cut(s)	3466
PalAI	GGCGCGCC	1 cut(s)	4155
PasI	CCCWGGG	1 cut(s)	37
PauI	GCGCGC	1 cut(s)	4155
PciSI	GCTCTTC	3 cut(s)	51, 2881, 3552
PctI	GAATGC	3 cut(s)	2683, 2718, 3477
PdmI	GAANNNNTTC	2 cut(s)	1279, 3001
PflMI	CCANNNNNTGG	1 cut(s)	2386
PfoI	TCCNGGA	2 cut(s)	3269, 3660
PshAI	GACNNNNGTC	2 cut(s)	3468, 4025
PshBI	ATTAAT	1 cut(s)	495
Psp6I	CCWGG	8 cut(s)	36, 167, 239, 379, 1456, 1830, 3269, 3777
PspFI	CCCAGC	2 cut(s)	1750, 3473
PspGI	CCWGG	8 cut(s)	36, 167, 239, 379, 1456, 1830, 3269, 3777
PspN4I	GGNNCC	4 cut(s)	2117, 2486, 2748, 3268
PspPI	GGNCC	9 cut(s)	52, 1164, 1246, 2115, 2216, 2755, 2923, 3361, 3415
PspXI	VCTCGAGB	1 cut(s)	3466
PsrI	GAACNNNNNNTAC	2 cut(s)	1164, 1196
PstI	CTGCAG	3 cut(s)	1024, 2155, 2316
PsuI	RGATCY	5 cut(s)	4, 1195, 1207, 1696, 2484
PteI	GCGCGC	1 cut(s)	4155
RruI	TCGCGA	1 cut(s)	159
RsaI	GTAC	8 cut(s)	232, 735, 859, 1002, 1411, 3056, 3602, 3627
RsaNI	GTAC	8 cut(s)	231, 734, 858, 1001, 1410, 3055, 3601, 3626
RseI	CAYNNNNRTG	6 cut(s)	102, 479, 2064, 2388, 2918, 3838
SapI	GCTCTTC	3 cut(s)	51, 2881, 3552
Sau96I	GGNCC	9 cut(s)	52, 1164, 1246, 2115, 2216, 2755, 2923, 3361, 3415
ScaI	AGTACT	1 cut(s)	3602
ScrFI	CCNGG	9 cut(s)	38, 169, 241, 381, 1458, 1832, 3271, 3662, 3779
SduI	GDGCHC	4 cut(s)	247, 3547, 3801, 4092
SfaNI	GCATC	9 cut(s)	130, 320, 382, 1222, 2224, 2231, 2545, 2977, 3217
SfcI	CTRYAG	5 cut(s)	552, 1020, 1270, 2151, 2312
Sfr274I	CTCGAG	1 cut(s)	3466
SfuI	TTCGAA	2 cut(s)	2738, 3443
SgsI	GGCGCGCC	1 cut(s)	4155
SinI	GGWCC	6 cut(s)	1246, 2216, 2755, 2923, 3361, 3415
SlaI	CTCGAG	1 cut(s)	3466
SmiMI	CAYNNNNRTG	6 cut(s)	102, 479, 2064, 2388, 2918, 3838
SphI	GCATGC	2 cut(s)	1601, 1636
SspI	AATATT	1 cut(s)	3199
StyD4I	CCNGG	9 cut(s)	36, 167, 239, 379, 1456, 1830, 3269, 3660, 3777
StyI	CCWWGG	3 cut(s)	480, 3117, 3222
TaqII	GACCGA	1 cut(s)	2292
TatI	WGTACW	4 cut(s)	857, 1000, 3600, 3625
TauI	GCSGC	5 cut(s)	68, 167, 463, 1821, 2288
TseFI	GTSAC	6 cut(s)	286, 1133, 1542, 1724, 3121, 4114
Tsp45I	GTSAC	6 cut(s)	286, 1133, 1542, 1724, 3121, 4114
TspGWI	ACGGA	4 cut(s)	434, 810, 1238, 2970
Van91I	CCANNNNNTGG	1 cut(s)	2386
VpaK11BI	GGWCC	6 cut(s)	1246, 2216, 2755, 2923, 3361, 3415
VspI	ATTAAT	1 cut(s)	495
XapI	RAATTY	6 cut(s)	1857, 2331, 2842, 2875, 3178, 3612
XceI	RCATGY	5 cut(s)	1385, 1601, 1636, 2799, 3758
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2265
XhoI	CTCGAG	1 cut(s)	3466
XmiI	GTMKAC	3 cut(s)	422, 792, 2811
XmnI	GAANNNNTTC	2 cut(s)	1279, 3001
ZrmI	AGTACT	1 cut(s)	3602
Zsp2I	ATGCAT	1 cut(s)	2801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.