Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

21582416 .. 21590126

Gene Structure 7711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG105100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAACTTTATGCAAAACAAGAAGGAGCGACAGCGCAAGTCTTCTTATGATCCGTCCAATGCAGTTGGAACATCTTCCGAAGAAGGATACGTTAGTGCCTCAAAGAAGTCATTTCTTTGGGAGATTAGCACTGGAACTGAGGGAAGTCCTGCAGAAAGTAAGCATGGTGCACTTCAACAGCTAATCGGTGCTGCTATAACTAATGACCACTTTATTTGGACCCAGTACTTCAATCAAATCTTGACAGTTGTACTTGAGATTTTGGATGATTTTGACTCCTCCATCCGGGAGCTCTCTCTTTCATTGATTATTGAAAAGCTTAATAAGAACCAGAAAGCTGCAATGGAAGATTCTGTTGAGATCATAATTGAGAAGCTGCTGCATGTTACAAAGGACTTAATTCCCCAGGTTGCAAATGAATTAGAGCACTGCTCGAGAATTGTTCTGTCGCTGTATGATCCATACAGATGTTTAAGTGTATGTATCCATTCCAGTACTCCACCCAGCCTTTGTGAAATTTTTATCAGCAGTGAGAAAACCGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

182

Amino Acids

20.39

Weight (kDa)

5.23

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	44, 452
AcsI	RAATTY	1 cut(s)	516
AfaI	GTAC	3 cut(s)	227, 252, 496
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgeI	ACCGGT	1 cut(s)	539
AgsI	TTSAA	3 cut(s)	176, 232, 314
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	5 cut(s)	181, 292, 319, 338, 376
AluI	AGCT	5 cut(s)	181, 292, 319, 338, 376
Alw21I	GWGCWC	3 cut(s)	172, 294, 429
Alw44I	GTGCAC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	44, 452
Ama87I	CYCGRG	1 cut(s)	433
ApaLI	GTGCAC	1 cut(s)	168
ApeKI	GCWGC	4 cut(s)	191, 338, 376, 379
ApoI	RAATTY	1 cut(s)	516
AsiGI	ACCGGT	1 cut(s)	539
Asp700I	GAANNNNTTC	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	219
AsuC2I	CCSGG	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	172
BaeI	ACNNNNGTAYC	2 cut(s)	79, 112
BanII	GRGCYC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	3 cut(s)	172, 294, 429
BbvI	GCAGC	4 cut(s)	178, 325, 363, 366
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	407
BciVI	GTATCC	2 cut(s)	80, 494
BcnI	CCSGG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	150
BfuI	GTATCC	2 cut(s)	80, 494
BisI	GCNGC	4 cut(s)	192, 339, 377, 380
BlsI	GCNGC	4 cut(s)	193, 340, 378, 381
BmcAI	AGTACT	2 cut(s)	227, 496
Bme1390I	CCNGG	2 cut(s)	287, 407
Bme18I	GGWCC	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	2 cut(s)	221, 544
BmrFI	CCNGG	2 cut(s)	287, 407
BmrI	ACTGGG	1 cut(s)	217
BmuI	ACTGGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	33
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	405
BsaWI	WCCGGW	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	539
Bse1I	ACTGG	3 cut(s)	136, 223, 492
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	2 cut(s)	271, 282
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	3 cut(s)	136, 223, 492
BseRI	GAGGAG	1 cut(s)	268
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	4 cut(s)	178, 325, 363, 366
BseYI	CCCAGC	1 cut(s)	503
BshTI	ACCGGT	1 cut(s)	539
BsiHKAI	GWGCWC	3 cut(s)	172, 294, 429
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	286, 540
BslI	CCNNNNNNNGG	1 cut(s)	285
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	3 cut(s)	172, 294, 429
Bsp143I	GATC	3 cut(s)	49, 360, 457
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	221, 544
BspMAI	CTGCAG	1 cut(s)	154
BspPI	GGATC	2 cut(s)	44, 452
BsrDI	GCAATG	1 cut(s)	348
BsrFI	RCCGGY	1 cut(s)	539
BsrI	ACTGG	3 cut(s)	136, 223, 492
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	3 cut(s)	49, 360, 457
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	271, 282
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	3 cut(s)	52, 363, 460
BstMBI	GATC	3 cut(s)	49, 360, 457
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	285, 405
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	172
BstV1I	GCAGC	4 cut(s)	178, 325, 363, 366
BstV2I	GAAGAC	1 cut(s)	33
BsuI	GTATCC	2 cut(s)	80, 494
BtsCI	GGATG	2 cut(s)	271, 282
BtsI	GCAGTG	2 cut(s)	427, 535
BtsIMutI	CAGTG	3 cut(s)	129, 427, 535
CfoI	GCGC	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	3 cut(s)	226, 251, 495
CspAI	ACCGGT	1 cut(s)	539
CspCI	CAANNNNNGTGG	2 cut(s)	197, 232
CviAII	CATG	2 cut(s)	164, 383
CviJI	RGCY	6 cut(s)	181, 292, 319, 338, 376, 507
CviKI_1	RGCY	6 cut(s)	181, 292, 319, 338, 376, 507
CviQI	GTAC	3 cut(s)	226, 251, 495
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	3 cut(s)	51, 362, 459
DpnII	GATC	3 cut(s)	49, 360, 457
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	405
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	2 cut(s)	167, 386
FaiI	YATR	9 cut(s)	11, 48, 165, 197, 365, 384, 456, 463, 481
FatI	CATG	2 cut(s)	163, 382
Fnu4HI	GCNGC	4 cut(s)	192, 339, 377, 380
FokI	GGATG	2 cut(s)	269, 278
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	4 cut(s)	192, 339, 377, 380
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	4 cut(s)	192, 339, 377, 380
GsaI	CCCAGC	1 cut(s)	507
HapII	CCGG	2 cut(s)	286, 540
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	167, 386
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	2 cut(s)	275, 350
HpaII	CCGG	2 cut(s)	286, 540
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	3 cut(s)	241, 435, 546
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	16, 77
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	7 cut(s)	13, 62, 152, 170, 341, 382, 413
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	167, 386
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	49, 360, 457
LmnI	GCTCC	2 cut(s)	25, 289
LpnPI	CCDG	9 cut(s)	117, 162, 236, 299, 344, 392, 419, 505, 517
Lsp1109I	GCAGC	4 cut(s)	178, 325, 363, 366
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	3 cut(s)	51, 362, 459
MboI	GATC	3 cut(s)	49, 360, 457
MboII	GAAGA	4 cut(s)	33, 66, 92, 359
MhlI	GDGCHC	3 cut(s)	172, 294, 429
MluCI	AATT	5 cut(s)	366, 399, 419, 438, 516
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	3 cut(s)	109, 133, 289
MroXI	GAANNNNTTC	1 cut(s)	73
MseI	TTAA	3 cut(s)	321, 398, 473
MslI	CAYNNNNRTG	1 cut(s)	466
MspI	CCGG	2 cut(s)	286, 540
MspR9I	CCNGG	2 cut(s)	287, 407
MvaI	CCWGG	1 cut(s)	407
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	3 cut(s)	49, 360, 457
NlaIII	CATG	2 cut(s)	167, 386
NlaIV	GGNNCC	2 cut(s)	221, 544
NspI	RCATGY	1 cut(s)	386
PaeR7I	CTCGAG	1 cut(s)	433
PdmI	GAANNNNTTC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	350
PfoI	TCCNGGA	1 cut(s)	285
PinAI	ACCGGT	1 cut(s)	539
PkrI	GCNGC	4 cut(s)	193, 340, 378, 381
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
Psp124BI	GAGCTC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	405
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	221, 544
PspPI	GGNCC	1 cut(s)	219
PstI	CTGCAG	1 cut(s)	154
RsaI	GTAC	3 cut(s)	227, 252, 496
RsaNI	GTAC	3 cut(s)	226, 251, 495
RseI	CAYNNNNRTG	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	321, 398, 473
SatI	GCNGC	4 cut(s)	192, 339, 377, 380
Sau3AI	GATC	3 cut(s)	49, 360, 457
Sau96I	GGNCC	1 cut(s)	219
ScaI	AGTACT	2 cut(s)	227, 496
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	2 cut(s)	287, 407
SduI	GDGCHC	3 cut(s)	172, 294, 429
SetI	ASST	7 cut(s)	93, 183, 294, 321, 340, 378, 411
SfcI	CTRYAG	1 cut(s)	150
Sfr274I	CTCGAG	1 cut(s)	433
SinI	GGWCC	1 cut(s)	219
SlaI	CTCGAG	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	466
SmlI	CTYRAG	2 cut(s)	254, 433
SmoI	CTYRAG	2 cut(s)	254, 433
Sse9I	AATT	5 cut(s)	366, 399, 419, 438, 516
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	2 cut(s)	285, 405
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	434
TasI	AATT	5 cut(s)	366, 399, 419, 438, 516
TatI	WGTACW	3 cut(s)	225, 250, 494
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	3 cut(s)	321, 398, 473
Tru9I	TTAA	3 cut(s)	321, 398, 473
TscAI	CASTG	3 cut(s)	136, 434, 535
TseI	GCWGC	4 cut(s)	191, 338, 376, 379
TspDTI	ATGAA	3 cut(s)	17, 291, 432
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	3 cut(s)	136, 434, 535
VneI	GTGCAC	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	516
XceI	RCATGY	1 cut(s)	386
XhoI	CTCGAG	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	73
ZrmI	AGTACT	2 cut(s)	227, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.