Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00167

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Forward (+)

6007 .. 7110

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATTAGAACTGAGGAAAGACCTGCAGAAAGCAAGCGTGGTGCACTTCAACAGCTAGTCGAAGCTGCTATAACTAGTGACCACTCTATTTGGACCAAGTACTTCAATCAAATTTTGACAGTTGTACTTGAGGTGTTGGATGATTTTGACTGCTCCATATGGGAGCTCTCTCTTTCATTGATTATTGAAAAGCTTAATGACCAGAAAGCTGCAATGGAAGATTCTATTGAGATCATAATTGAGAAGCTGCTGCATGTTACAAAGGAATTACTTCCCCAGGTTGCAAATGAATCAGAGCACTGCTTGTTCTGTCGCTGTATGATCCATTCAGATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

111

Amino Acids

12.75

Weight (kDa)

4.68

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	108
AfaI	GTAC	2 cut(s)	98, 123
AgsI	TTSAA	3 cut(s)	47, 103, 185
AhlI	ACTAGT	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	6 cut(s)	52, 62, 163, 190, 206, 244
AluI	AGCT	6 cut(s)	52, 62, 163, 190, 206, 244
Alw21I	GWGCWC	3 cut(s)	43, 165, 297
Alw44I	GTGCAC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	313
ApaLI	GTGCAC	1 cut(s)	39
ApeKI	GCWGC	4 cut(s)	62, 206, 244, 247
ApoI	RAATTY	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	3 cut(s)	43, 165, 297
BbvI	GCAGC	4 cut(s)	49, 193, 231, 234
BciT130I	CCWGG	1 cut(s)	275
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	2 cut(s)	53, 72
BfmI	CTRYAG	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	4 cut(s)	63, 207, 245, 248
BlsI	GCNGC	4 cut(s)	64, 208, 246, 249
BmcAI	AGTACT	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	4 cut(s)	49, 193, 231, 234
BsiHKAI	GWGCWC	3 cut(s)	43, 165, 297
Bsp1286I	GDGCHC	3 cut(s)	43, 165, 297
Bsp143I	GATC	2 cut(s)	228, 318
BspMAI	CTGCAG	1 cut(s)	25
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	2 cut(s)	228, 318
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	142
BstKTI	GATC	2 cut(s)	231, 321
BstMBI	GATC	2 cut(s)	228, 318
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	4 cut(s)	49, 193, 231, 234
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	295
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	97, 122
CspCI	CAANNNNNGTGG	2 cut(s)	68, 103
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	6 cut(s)	52, 62, 163, 190, 206, 244
CviKI_1	RGCY	6 cut(s)	52, 62, 163, 190, 206, 244
CviQI	GTAC	2 cut(s)	97, 122
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	2 cut(s)	230, 320
DpnII	GATC	2 cut(s)	228, 318
Ecl136II	GAGCTC	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	163
EcoICRI	GAGCTC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	1 cut(s)	254
FaiI	YATR	6 cut(s)	68, 155, 157, 233, 252, 317
FatI	CATG	1 cut(s)	250
FauNDI	CATATG	1 cut(s)	155
Fnu4HI	GCNGC	4 cut(s)	63, 207, 245, 248
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	4 cut(s)	63, 207, 245, 248
FspBI	CTAG	2 cut(s)	53, 72
GluI	GCNGC	4 cut(s)	63, 207, 245, 248
Hin1II	CATG	1 cut(s)	254
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	2 cut(s)	218, 287
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	2 cut(s)	292, 328
Hpy8I	GTNNAC	1 cut(s)	41
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	5 cut(s)	23, 41, 209, 250, 281
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	228, 318
LmnI	GCTCC	2 cut(s)	155, 160
LpnPI	CCDG	4 cut(s)	33, 212, 260, 287
Lsp1109I	GCAGC	4 cut(s)	49, 193, 231, 234
MaeI	CTAG	2 cut(s)	53, 72
MaeIII	GTNAC	2 cut(s)	74, 253
MalI	GATC	2 cut(s)	230, 320
MboI	GATC	2 cut(s)	228, 318
MboII	GAAGA	1 cut(s)	227
MhlI	GDGCHC	3 cut(s)	43, 165, 297
MluCI	AATT	3 cut(s)	108, 234, 263
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	2 cut(s)	4, 121
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	2 cut(s)	192, 334
MslI	CAYNNNNRTG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
NdeI	CATATG	1 cut(s)	155
NdeII	GATC	2 cut(s)	228, 318
NlaIII	CATG	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	74
NspI	RCATGY	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	218, 287
PkrI	GCNGC	4 cut(s)	64, 208, 246, 249
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	90
PstI	CTGCAG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	98, 123
RsaNI	GTAC	2 cut(s)	97, 122
RseI	CAYNNNNRTG	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	192, 334
SatI	GCNGC	4 cut(s)	63, 207, 245, 248
Sau3AI	GATC	2 cut(s)	228, 318
Sau96I	GGNCC	1 cut(s)	90
ScaI	AGTACT	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	3 cut(s)	43, 165, 297
SetI	ASST	9 cut(s)	22, 54, 64, 132, 165, 192, 208, 246, 279
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	3 cut(s)	108, 234, 263
SspMI	CTAG	2 cut(s)	53, 72
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	57
TasI	AATT	3 cut(s)	108, 234, 263
TatI	WGTACW	2 cut(s)	96, 121
TfiI	GAWTC	2 cut(s)	218, 287
Tru1I	TTAA	2 cut(s)	192, 334
Tru9I	TTAA	2 cut(s)	192, 334
TscAI	CASTG	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	4 cut(s)	62, 206, 244, 247
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	162, 300
TspRI	CASTG	1 cut(s)	302
VneI	GTGCAC	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	2 cut(s)	53, 72
ZrmI	AGTACT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.