Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

49847232 .. 49847522

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG359900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCCCTTACTCCAACGCCGGAATTCGCAAGATCTGAACAGGCCAGCACCAGATCAAGCCCCGATGGAGGAAGTGCTTGAACTCGCATGCTCCAAAGACACCAAGAAGCGCATGGCCGGAGTGGAACGCCTCCACCAGCTTCTCGAAGCTTCCAGGAAGAGCCTCACTTCACCAGAGCCCGGAGGTCACTGCGCTCATCGATTGCTGCACGAATCTTCTCAAGGACAGCAACTTCCGAGTCTCCCAGGGCGCTCTTCAGGCCCTCGCCTTCGCCGCCTTCCTCTTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

96

Amino Acids

10.75

Weight (kDa)

10.37

Isoelectric Point (pI)

89.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	274
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	67, 179
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	152, 244
AluBI	AGCT	2 cut(s)	139, 149
AluI	AGCT	2 cut(s)	139, 149
Alw26I	GTCTC	1 cut(s)	245
AoxI	GGCC	3 cut(s)	41, 114, 259
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	22
AspLEI	GCGC	3 cut(s)	111, 194, 252
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	1 cut(s)	58
BciT130I	CCWGG	2 cut(s)	154, 246
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	245
BfoI	RGCGCY	1 cut(s)	253
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	2 cut(s)	206, 274
BlsI	GCNGC	2 cut(s)	207, 275
Bme1390I	CCNGG	3 cut(s)	154, 180, 246
BmgT120I	GGNCC	1 cut(s)	260
BmrFI	CCNGG	3 cut(s)	154, 180, 246
BpuEI	CTTGAG	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	180
Bsa29I	ATCGAT	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	244, 245
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 179
BseBI	CCWGG	2 cut(s)	154, 246
BseCI	ATCGAT	1 cut(s)	199
BseDI	CCNNGG	2 cut(s)	244, 245
BseLI	CCNNNNNNNGG	2 cut(s)	67, 179
BseXI	GCAGC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	191
BshFI	GGCC	3 cut(s)	43, 116, 261
BshVI	ATCGAT	1 cut(s)	199
BsiSI	CCGG	3 cut(s)	19, 117, 180
BslI	CCNNNNNNNGG	2 cut(s)	67, 179
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	3 cut(s)	43, 116, 261
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	31, 52
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	3 cut(s)	43, 116, 261
BspDI	ATCGAT	1 cut(s)	199
BspQI	GCTCTTC	2 cut(s)	152, 259
BssECI	CCNNGG	2 cut(s)	244, 245
BssMI	GATC	2 cut(s)	31, 52
Bst2UI	CCWGG	2 cut(s)	154, 246
Bst6I	CTCTTC	3 cut(s)	152, 259, 288
BstC8I	GCNNGC	2 cut(s)	45, 88
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	3 cut(s)	111, 194, 252
BstKTI	GATC	2 cut(s)	34, 55
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	2 cut(s)	31, 52
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 273
BstNI	CCWGG	2 cut(s)	154, 246
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	3 cut(s)	152, 178, 244
BstV1I	GCAGC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	43, 116, 261
BsuTUI	ATCGAT	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	45, 88
CfoI	GCGC	3 cut(s)	111, 194, 252
Cfr13I	GGNCC	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	199
CviAII	CATG	2 cut(s)	87, 112
CviJI	RGCY	8 cut(s)	43, 59, 116, 139, 149, 162, 178, 261
CviKI_1	RGCY	8 cut(s)	43, 59, 116, 139, 149, 162, 178, 261
DpnI	GATC	2 cut(s)	33, 54
DpnII	GATC	2 cut(s)	31, 52
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	3 cut(s)	152, 259, 288
EarI	CTCTTC	3 cut(s)	152, 259, 288
Eco24I	GRGCYC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	152, 244
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	2 cut(s)	90, 115
FaiI	YATR	2 cut(s)	88, 113
FatI	CATG	2 cut(s)	86, 111
Fnu4HI	GCNGC	2 cut(s)	206, 274
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	2 cut(s)	206, 274
GlaI	GCGC	3 cut(s)	110, 193, 251
GluI	GCNGC	2 cut(s)	206, 274
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	3 cut(s)	43, 116, 261
HapII	CCGG	3 cut(s)	19, 117, 180
HhaI	GCGC	3 cut(s)	111, 194, 252
Hin1II	CATG	2 cut(s)	90, 115
Hin6I	GCGC	3 cut(s)	109, 192, 250
HinP1I	GCGC	3 cut(s)	109, 192, 250
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	2 cut(s)	212, 238
HpaII	CCGG	3 cut(s)	19, 117, 180
HphI	GGTGA	1 cut(s)	162
Hpy188I	TCNGA	2 cut(s)	36, 237
Hpy188III	TCNNGA	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	278, 287
HpyCH4V	TGCA	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 273
Hsp92II	CATG	2 cut(s)	90, 115
HspAI	GCGC	3 cut(s)	109, 192, 250
Kzo9I	GATC	2 cut(s)	31, 52
LguI	GCTCTTC	2 cut(s)	152, 259
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	2 cut(s)	33, 54
MboI	GATC	2 cut(s)	31, 52
MboII	GAAGA	4 cut(s)	169, 207, 246, 275
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	1 cut(s)	22
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	6 cut(s)	61, 140, 173, 176, 273, 291
MspI	CCGG	3 cut(s)	19, 117, 180
MspR9I	CCNGG	3 cut(s)	154, 180, 246
MvaI	CCWGG	2 cut(s)	154, 246
MwoI	GCNNNNNNNGC	2 cut(s)	258, 273
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	31, 52
NlaIII	CATG	2 cut(s)	90, 115
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	90
PaeI	GCATGC	1 cut(s)	90
PasI	CCCWGGG	1 cut(s)	245
PciSI	GCTCTTC	2 cut(s)	152, 259
PfeI	GAWTC	1 cut(s)	212
PfoI	TCCNGGA	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	207, 275
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	152, 244
PspGI	CCWGG	2 cut(s)	152, 244
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	31
SapI	GCTCTTC	2 cut(s)	152, 259
SatI	GCNGC	2 cut(s)	206, 274
Sau3AI	GATC	2 cut(s)	31, 52
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	3 cut(s)	154, 180, 246
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	3 cut(s)	141, 151, 187
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	1 cut(s)	274
StyD4I	CCNGG	3 cut(s)	152, 178, 244
TaqI	TCGA	2 cut(s)	144, 199
TasI	AATT	1 cut(s)	22
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	212
TscAI	CASTG	1 cut(s)	194
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	185
TspRI	CASTG	1 cut(s)	194
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.