Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

47816223 .. 47826008

Gene Structure 9786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00319710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2952 bp

ATGACCGGAGTGGAGCGCCTCCACCAGCTTATCAAAGCTTTCAGGAAGAGCCTCACTTTACCGGAGGTCATCGCCCTTGTCGATTGCTGCATGGATCTTCTCAAGGACAAAAACTTCCGAGTCTCCCAGGGCGCTCTTCAAGCCCTTGCTTCCGCCGCCATCCTCTCGGCGACCATCTCAAATTCCATTTCAATGAGTTTGTCCCCGCCGTCGTCGAGCAGTTGGGTGATGCCAAGCAGCCTGTTCACGACGCCGCCCGAAGGCTCCTGCCTACTCTTATGGAGGTTGGGATTGGATTTGTTGATGTCACCTGACGTTTATACTTACTCCAATTCCCAGGAGACGTATACGCAGGCAGGGACTCAGTTCCGTGATGAATTTCAGCGGCACCATCTTCCCATGTCCATGGTGAAGGATATTAATGCACGGCTAGAGAGGATTGAATCTAAGAATCGCTCATCAGAGGGACTTACTGCTGTAGAAACAAAGCCCTTGAGCCACAACCCAAAGAGAAATAGTCCAAAGGCTAAGAGTTCCTCTAGGGAGGTATCTCTATTTGGAGCGGAAACTGCTCCAACTGTAAAATCTGTAGACCCTATAAAAGTTTATTGTGAAAAGGAACTAATAAGAGAAGTGGAGAAAATAGCTTCTACCCTTGTACCAGAGAGACTGGTCAATTCGGATTGCTGCAATGCAGAGAATAGAAGGGCTTGTATATGGAGTAGTTCTTGTGTAGAGTTTGCTAATAATCAGTTCCTATCAGGTGCTGCTGATTATCAATCATTTCGGGGACTGTTGAAGCTACTTGTGAATCCTCTGAACACACAGCTGTCTGATCGAAGGTCTAGCATAGTGAAGCAGGCTTGCTATCTGTTATGCTTTTTGTCCAAGGAGCTATTGGGGGATTTTAAGGCATATGCAGAGATTTTCATTCCAGTCCTTTTCAAGCTGGTTGCGATCACTGTACTTGTAATTGTAGAGTCTGCAGATAACTGCATAAAAACGATGTTGCATAACTGTAAAGTTGCTGGGGTGCTCCCTCGTATTGTGGATTGTGCAGAGAATGACCGTGCTGTTACTATGCACCATGCAATGAGCGAGTTAATCAATGAAGAGGATGGGGGTATACACAGGCGACATGCTTCTCCATCTGTTCGTGATAGGGGTACACCAGTCTCATTTACTCCCCAGCCATCTGCTTCTGCTAATCTACCTGGATATGGAACTTCGGCTACTGTTGCAATGGATAGAAGTTCTAGTTTATCCTCTAGGACTTCTTTCTCTTTAGGACTTCATTTGTCACAAGCGAAATTACATGGTAAAGGTACTGAGCGTAGTCTGGAAAGTGTGTTGCATGCAAGCAAACTGAAGGTCAGTGCAATTGAAAGCATGCTTAGAGGTTTGGAGTTGTTTGACAGACATAATTCTCCAACCCTTTGGTCTTCTAGTCTGGATATAGGAGTTGGCCCTCCATCATCTCATGGTCCACCATTCCCTGCTGCTGTCCCAGTTTCTAATCATCTTTCAAACTCTTTAATGACAGATCCAACCAGCTCAAGTAAAAAATGTAGTAACCGCAATGGTGGCCTGGTTTTGTCTGATATCATTATGCAAATTCAAGCTTCCAAAGATCCTGCTAAATCATCATATCGCAGAAGGATATCTGCAGGCAGGGGGAGAAGTTTTGATGATAGCCAGCTCTCACAGGAGATGTTAAATTATGTAGAAAGTCCAGCATCGTTGAATGATGCTCTGGGGAAGATGATCCGCACCACAAAGTTGCACAATCAGCCCCTTTCAACACTAGCAGATATTATTCCATCTTGCCATAAGCCCTTTGAAAGTTACATGGAGAGGATCCGATCTCATGTTTTCTCACAGTCAATTGACCCAAAGGAGGTTAGGCAATCTTACTCAACAACCAAGCATTCAGTGAATACTGAAGGTTCTGGTAATAGTGGCATCCTAAAATTATGGCTTTTGAAGTTGACACCATTGGTCCATGATAAAAACACTAAACTAAAGGAGGCAGCTGTTGCATGCATAATCTCTGTATACTCCCACTTTGATCCAACATCTGTCTTGAATTTTATTCTTAGCTTGTCAGTTGAAGAACAAAATTCTTGGAGAAGAGCCTTGAAACATTGTACTCCTCACATCAAAGTGGACCTTATGAACTTTTTGCAAAACAAGAAAGAGCAACAGCGCAAATCTTCCTATGGTCCATCTGATGCAGTCGGAACATCTTCCGAAGAAGGATACGTTATTGCTTCAAAGAAGAGTCACTTCTTTGGGAGGTATTCTGCTGGTTCAGTTGATAGTGATGGTGGCAGGAAATGGAGTTTAACCCATGAAACAGCCTTGGTCACTGGCTCGGTTGGCCAAGCAGCTTCTGATCAGACTGGGGAAAACTTGTATCAGAATTTTGAGACTGGTTCTAACATTGATGTTCTCAGTGCAAAATACAAGGATCCAACTTACACGATCAGTGCCATGAATCAGAGCTCTGACCTGAATCACCACCTACTTAAAGCTTTAAAGGTTAATTCGATTCCAGACTCGGGTCCCAGCATTCCTCAGATACTCCATCTGATTAGCACTGGAACTGAGGAAAGACCTGCAGAAAGCAAGCGTGGTGCACTTCAACAGCTAGTCGAAGTTGCTATAACTAGTGACCACTCTATTTGGACCAAGTACTTCAATCAAATTTTGACAGTTGTACTTGAGGTGTTGGATGATTTTGACTGCTCCATCTGGGAGCTCTCTCTTTCATTGATTATTGAAAAGCTCAATGACCAGAAAGCTGCAATGGAAGATTCTATTGAGATCATAATTGAGAAGTTGCTGCATGTTACAAAGGAATTAGTTCCCCAGGTTGCAAATGAATCAGAGCACTGCTTGAGTATTGTTCTGTCGCTGTATGATCCATTCAGATGTTTATCAGCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

983

Amino Acids

108.24

Weight (kDa)

7.58

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLASP_N	PF12348	259 - 367	2e-14	CLASP N terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2626
AccB1I	GGYRCC	1 cut(s)	387
AccBSI	CCGCTC	1 cut(s)	563
AccI	GTMKAC	4 cut(s)	347, 591, 1126, 2055
AciI	CCGC	8 cut(s)	153, 156, 206, 254, 385, 563, 1576, 1768
AcoI	YGGCCR	1 cut(s)	2380
AcsI	RAATTY	7 cut(s)	181, 377, 1614, 2086, 2119, 2422, 2706
AcuI	CTGAAG	2 cut(s)	1388, 1962
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	7 cut(s)	660, 966, 1168, 1327, 2149, 2696, 2721
AfiI	CCNNNNNNNGG	4 cut(s)	260, 1220, 1897, 2561
AhlI	ACTAGT	1 cut(s)	2669
AjnI	CCWGG	5 cut(s)	126, 336, 1213, 1587, 2871
Alw21I	GWGCWC	5 cut(s)	1038, 2507, 2641, 2763, 2895
Alw26I	GTCTC	5 cut(s)	127, 335, 661, 1180, 2423
Alw44I	GTGCAC	1 cut(s)	2637
AlwNI	CAGNNNCTG	2 cut(s)	767, 2393
Ama87I	CYCGRG	1 cut(s)	2560
AoxI	GGCC	3 cut(s)	1465, 1585, 2380
ApaLI	GTGCAC	1 cut(s)	2637
ApeKI	GCWGC	9 cut(s)	87, 237, 687, 767, 1499, 2030, 2387, 2804, 2845
ApoI	RAATTY	7 cut(s)	181, 377, 1614, 2086, 2119, 2422, 2706
ArsI	GACNNNNNNTTYG	2 cut(s)	1356, 1388
AseI	ATTAAT	1 cut(s)	420
Asp700I	GAANNNNTTC	2 cut(s)	2245, 2865
AspLEI	GCGC	3 cut(s)	18, 134, 2208
AspS9I	GGNCC	7 cut(s)	1466, 1484, 1999, 2167, 2222, 2564, 2688
AsuHPI	GGTGA	4 cut(s)	238, 300, 421, 2510
AvaI	CYCGRG	1 cut(s)	2560
AvaII	GGWCC	6 cut(s)	1484, 1999, 2167, 2222, 2564, 2688
BaeGI	GKGCMC	1 cut(s)	2641
BaeI	ACNNNNGTAYC	4 cut(s)	642, 675, 1158, 1191
BalI	TGGCCA	1 cut(s)	2382
BamHI	GGATCC	2 cut(s)	1857, 2470
BanI	GGYRCC	1 cut(s)	387
BanII	GRGCYC	2 cut(s)	2507, 2763
BbsI	GAAGAC	1 cut(s)	1434
Bbv12I	GWGCWC	5 cut(s)	1038, 2507, 2641, 2763, 2895
BbvI	GCAGC	9 cut(s)	74, 249, 674, 754, 1486, 2042, 2399, 2791, 2832
BceAI	ACGGC	2 cut(s)	193, 443
BciT130I	CCWGG	5 cut(s)	128, 338, 1215, 1589, 2873
BciVI	GTATCC	1 cut(s)	2252
BclI	TGATCA	1 cut(s)	2395
BcoDI	GTCTC	5 cut(s)	127, 335, 661, 1180, 2423
BcuI	ACTAGT	1 cut(s)	2669
BfaI	CTAG	9 cut(s)	431, 540, 846, 1257, 1269, 1446, 1805, 2651, 2670
BfmI	CTRYAG	5 cut(s)	477, 588, 984, 1665, 2619
BfoI	RGCGCY	2 cut(s)	19, 135
BfuAI	ACCTGC	1 cut(s)	2626
BfuI	GTATCC	1 cut(s)	2252
BmcAI	AGTACT	1 cut(s)	2696
Bme1390I	CCNGG	5 cut(s)	128, 338, 1215, 1589, 2873
Bme18I	GGWCC	6 cut(s)	1484, 1999, 2167, 2222, 2564, 2688
BmeT110I	CYCGRG	1 cut(s)	2560
BmgT120I	GGNCC	7 cut(s)	1466, 1484, 1999, 2167, 2222, 2564, 2688
BmiI	GGNNCC	6 cut(s)	265, 389, 1859, 2472, 2565, 2566
BmrFI	CCNGG	5 cut(s)	128, 338, 1215, 1589, 2873
BmrI	ACTGGG	2 cut(s)	1502, 2412
BmsI	GCATC	5 cut(s)	219, 1738, 1745, 1971, 2221
BmuI	ACTGGG	2 cut(s)	1502, 2412
BoxI	GACNNNNGTC	1 cut(s)	2562
BpiI	GAAGAC	1 cut(s)	1434
BpuEI	CTTGAG	5 cut(s)	86, 514, 1540, 2744, 2920
BsaBI	GATNNNNATC	1 cut(s)	2938
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	7 cut(s)	126, 127, 336, 405, 888, 2361, 2871
BsaWI	WCCGGW	2 cut(s)	5, 61
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 1220, 1897, 2561
Bse1I	ACTGG	8 cut(s)	675, 935, 1172, 1508, 2374, 2407, 2437, 2605
Bse3DI	GCAATG	5 cut(s)	697, 1098, 1248, 1585, 2814
Bse8I	GATNNNNATC	1 cut(s)	2938
BseBI	CCWGG	5 cut(s)	128, 338, 1215, 1589, 2873
BseDI	CCNNGG	7 cut(s)	126, 127, 336, 405, 888, 2361, 2871
BseGI	GGATG	4 cut(s)	159, 1123, 1962, 2740
BseJI	GATNNNNATC	1 cut(s)	2938
BseLI	CCNNNNNNNGG	4 cut(s)	260, 1220, 1897, 2561
BseMI	GCAATG	5 cut(s)	697, 1098, 1248, 1585, 2814
BseMII	CTCAG	5 cut(s)	377, 1320, 2467, 2591, 2598
BseNI	ACTGG	8 cut(s)	675, 935, 1172, 1508, 2374, 2407, 2437, 2605
BseRI	GAGGAG	1 cut(s)	2142
BseSI	GKGCMC	1 cut(s)	2641
BseXI	GCAGC	9 cut(s)	74, 249, 674, 754, 1486, 2042, 2399, 2791, 2832
BseYI	CCCAGC	3 cut(s)	1028, 1188, 2567
BsgI	GTGCAG	1 cut(s)	1077
BshFI	GGCC	3 cut(s)	1467, 1587, 2382
BshNI	GGYRCC	1 cut(s)	387
BsiHKAI	GWGCWC	5 cut(s)	1038, 2507, 2641, 2763, 2895
BsiHKCI	CYCGRG	1 cut(s)	2560
BsiSI	CCGG	2 cut(s)	6, 62
BslFI	GGGAC	6 cut(s)	187, 373, 480, 804, 1490, 2550
BslI	CCNNNNNNNGG	4 cut(s)	260, 1220, 1897, 2561
BsmAI	GTCTC	5 cut(s)	127, 335, 661, 1180, 2423
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	6 cut(s)	187, 373, 480, 804, 1490, 2550
BsmI	GAATGC	2 cut(s)	1927, 2571
BsnI	GGCC	3 cut(s)	1467, 1587, 2382
BsoBI	CYCGRG	1 cut(s)	2560
Bsp1286I	GDGCHC	5 cut(s)	1038, 2507, 2641, 2763, 2895
Bsp19I	CCATGG	1 cut(s)	405
BspACI	CCGC	8 cut(s)	153, 156, 206, 254, 385, 563, 1576, 1768
BspANI	GGCC	3 cut(s)	1467, 1587, 2382
BspCNI	CTCAG	5 cut(s)	376, 1321, 2466, 2590, 2599
BspLI	GGNNCC	6 cut(s)	265, 389, 1859, 2472, 2565, 2566
BspMAI	CTGCAG	3 cut(s)	988, 1669, 2623
BspMI	ACCTGC	1 cut(s)	2626
BspQI	GCTCTTC	3 cut(s)	41, 141, 2125
BspT107I	GGYRCC	1 cut(s)	387
BsrBI	CCGCTC	1 cut(s)	563
BsrDI	GCAATG	5 cut(s)	697, 1098, 1248, 1585, 2814
BsrI	ACTGG	8 cut(s)	675, 935, 1172, 1508, 2374, 2407, 2437, 2605
BssECI	CCNNGG	7 cut(s)	126, 127, 336, 405, 888, 2361, 2871
BssNAI	GTATAC	3 cut(s)	348, 1127, 2056
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	3 cut(s)	405, 888, 2361
Bst1107I	GTATAC	3 cut(s)	348, 1127, 2056
Bst2UI	CCWGG	5 cut(s)	128, 338, 1215, 1589, 2873
Bst4CI	ACNGT	8 cut(s)	580, 795, 964, 1019, 1070, 1237, 1881, 2716
Bst6I	CTCTTC	5 cut(s)	41, 141, 1107, 2125, 2273
BstACI	GRCGYC	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	2036
BstDEI	CTNAG	9 cut(s)	363, 447, 528, 1329, 1394, 2096, 2453, 2577, 2607
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	4 cut(s)	159, 1123, 1962, 2740
BstH2I	RGCGCY	2 cut(s)	19, 135
BstHHI	GCGC	3 cut(s)	18, 134, 2208
BstMAI	GTCTC	5 cut(s)	127, 335, 661, 1180, 2423
BstMWI	GCNNNNNNNGC	8 cut(s)	140, 155, 569, 1238, 1584, 1789, 2036, 2379
BstNI	CCWGG	5 cut(s)	128, 338, 1215, 1589, 2873
BstNSI	RCATGY	5 cut(s)	1142, 1358, 1393, 2043, 2852
BstPAI	GACNNNNGTC	1 cut(s)	2562
BstSCI	CCNGG	5 cut(s)	126, 336, 1213, 1587, 2871
BstSFI	CTRYAG	5 cut(s)	477, 588, 984, 1665, 2619
BstSLI	GKGCMC	1 cut(s)	2641
BstV1I	GCAGC	9 cut(s)	74, 249, 674, 754, 1486, 2042, 2399, 2791, 2832
BstV2I	GAAGAC	1 cut(s)	1434
BstX2I	RGATCY	5 cut(s)	94, 1543, 1630, 1857, 2470
BstXI	CCANNNNNNTGG	2 cut(s)	406, 1437
BstYI	RGATCY	5 cut(s)	94, 1543, 1630, 1857, 2470
BstZ17I	GTATAC	3 cut(s)	348, 1127, 2056
BsuI	GTATCC	1 cut(s)	2252
BsuRI	GGCC	3 cut(s)	1467, 1587, 2382
BtgI	CCRYGG	1 cut(s)	405
BtgZI	GCGATG	1 cut(s)	55
BtsCI	GGATG	4 cut(s)	159, 1123, 1962, 2740
BtsI	GCAGTG	1 cut(s)	2893
BtsIMutI	CAGTG	8 cut(s)	960, 1381, 1938, 2367, 2461, 2494, 2598, 2893
BveI	ACCTGC	1 cut(s)	2626
CaiI	CAGNNNCTG	2 cut(s)	767, 2393
CfoI	GCGC	3 cut(s)	18, 134, 2208
Cfr13I	GGNCC	7 cut(s)	1466, 1484, 1999, 2167, 2222, 2564, 2688
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	7 cut(s)	659, 965, 1167, 1326, 2148, 2695, 2720
CspCI	CAANNNNNGTGG	2 cut(s)	2666, 2701
CviQI	GTAC	7 cut(s)	659, 965, 1167, 1326, 2148, 2695, 2720
DdeI	CTNAG	9 cut(s)	363, 447, 528, 1329, 1394, 2096, 2453, 2577, 2607
DraI	TTTAAA	1 cut(s)	2538
EaeI	YGGCCR	1 cut(s)	2380
Eam1104I	CTCTTC	5 cut(s)	41, 141, 1107, 2125, 2273
EarI	CTCTTC	5 cut(s)	41, 141, 1107, 2125, 2273
EciI	GGCGGA	1 cut(s)	142
Ecl136II	GAGCTC	2 cut(s)	2505, 2761
Eco130I	CCWWGG	3 cut(s)	405, 888, 2361
Eco24I	GRGCYC	2 cut(s)	2507, 2763
Eco32I	GATATC	2 cut(s)	1603, 1662
Eco47I	GGWCC	6 cut(s)	1484, 1999, 2167, 2222, 2564, 2688
Eco53kI	GAGCTC	2 cut(s)	2505, 2761
Eco57I	CTGAAG	2 cut(s)	1388, 1962
Eco88I	CYCGRG	1 cut(s)	2560
EcoICRI	GAGCTC	2 cut(s)	2505, 2761
EcoO109I	RGGNCCY	1 cut(s)	2564
EcoRII	CCWGG	5 cut(s)	126, 336, 1213, 1587, 2871
EcoRV	GATATC	2 cut(s)	1603, 1662
EcoT14I	CCWWGG	3 cut(s)	405, 888, 2361
EcoT22I	ATGCAT	1 cut(s)	2045
EcoT38I	GRGCYC	2 cut(s)	2507, 2763
ErhI	CCWWGG	3 cut(s)	405, 888, 2361
Esp3I	CGTCTC	1 cut(s)	335
FalI	AAGNNNNNCTT	4 cut(s)	2154, 2186, 2270, 2302
FaqI	GGGAC	6 cut(s)	187, 373, 480, 804, 1490, 2550
FauI	CCCGC	1 cut(s)	213
FauNDI	CATATG	1 cut(s)	916
FbaI	TGATCA	1 cut(s)	2395
FblI	GTMKAC	4 cut(s)	347, 591, 1126, 2055
FokI	GGATG	4 cut(s)	146, 1130, 1949, 2747
FriOI	GRGCYC	2 cut(s)	2507, 2763
FspBI	CTAG	9 cut(s)	431, 540, 846, 1257, 1269, 1446, 1805, 2651, 2670
GlaI	GCGC	3 cut(s)	17, 133, 2207
GsaI	CCCAGC	3 cut(s)	1032, 1192, 2571
HaeII	RGCGCY	2 cut(s)	19, 135
HaeIII	GGCC	3 cut(s)	1467, 1587, 2382
HapII	CCGG	2 cut(s)	6, 62
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	3 cut(s)	18, 134, 2208
Hin1I	GRCGYC	1 cut(s)	251
Hin6I	GCGC	3 cut(s)	16, 132, 2206
HinP1I	GCGC	3 cut(s)	16, 132, 2206
HincII	GTYRAC	1 cut(s)	1989
HindII	GTYRAC	1 cut(s)	1989
HindIII	AAGCTT	3 cut(s)	36, 1620, 2532
HpaII	CCGG	2 cut(s)	6, 62
HphI	GGTGA	4 cut(s)	238, 300, 421, 2510
Hpy188III	TCNNGA	7 cut(s)	43, 247, 1157, 1340, 1451, 2083, 2555
Hpy99I	CGWCG	3 cut(s)	214, 217, 253
HpyAV	CCTTC	8 cut(s)	254, 406, 699, 834, 1363, 1650, 1937, 2249
HpyCH4III	ACNGT	8 cut(s)	580, 795, 964, 1019, 1070, 1237, 1881, 2716
HpyCH4IV	ACGT	3 cut(s)	315, 344, 2262
HpyF10VI	GCNNNNNNNGC	8 cut(s)	140, 155, 569, 1238, 1584, 1789, 2036, 2379
HpyF3I	CTNAG	9 cut(s)	363, 447, 528, 1329, 1394, 2096, 2453, 2577, 2607
HpySE526I	ACGT	3 cut(s)	315, 344, 2262
Hsp92I	GRCGYC	1 cut(s)	251
HspAI	GCGC	3 cut(s)	16, 132, 2206
KflI	GGGWCCC	1 cut(s)	2564
Ksp22I	TGATCA	1 cut(s)	2395
LguI	GCTCTTC	3 cut(s)	41, 141, 2125
LmnI	GCTCC	8 cut(s)	13, 269, 560, 577, 892, 1041, 2753, 2758
Lsp1109I	GCAGC	9 cut(s)	74, 249, 674, 754, 1486, 2042, 2399, 2791, 2832
LweI	GCATC	5 cut(s)	219, 1738, 1745, 1971, 2221
MaeI	CTAG	9 cut(s)	431, 540, 846, 1257, 1269, 1446, 1805, 2651, 2670
MaeII	ACGT	3 cut(s)	315, 344, 2262
MaeIII	GTNAC	9 cut(s)	306, 1075, 1299, 1571, 1844, 2282, 2365, 2672, 2851
MbiI	CCGCTC	1 cut(s)	563
MfeI	CAATTG	2 cut(s)	1380, 1884
MflI	RGATCY	5 cut(s)	94, 1543, 1630, 1857, 2470
MhlI	GDGCHC	5 cut(s)	1038, 2507, 2641, 2763, 2895
MlsI	TGGCCA	1 cut(s)	2382
MluNI	TGGCCA	1 cut(s)	2382
MlyI	GAGTC	5 cut(s)	129, 355, 989, 2290, 2552
MmeI	TCCRAC	7 cut(s)	599, 1454, 1571, 2096, 2218, 2498, 2712
Mox20I	TGGCCA	1 cut(s)	2382
Mph1103I	ATGCAT	1 cut(s)	2045
MroXI	GAANNNNTTC	2 cut(s)	2245, 2865
MscI	TGGCCA	1 cut(s)	2382
MseI	TTAA	9 cut(s)	420, 909, 1103, 1535, 1715, 2345, 2529, 2537, 2544
MslI	CAYNNNNRTG	4 cut(s)	191, 404, 2162, 2932
Msp20I	TGGCCA	1 cut(s)	2382
MspA1I	CMGCKG	4 cut(s)	385, 829, 2033, 2945
MspI	CCGG	2 cut(s)	6, 62
MspR9I	CCNGG	5 cut(s)	128, 338, 1215, 1589, 2873
MunI	CAATTG	2 cut(s)	1380, 1884
Mva1269I	GAATGC	2 cut(s)	1927, 2571
MvaI	CCWGG	5 cut(s)	128, 338, 1215, 1589, 2873
MwoI	GCNNNNNNNGC	8 cut(s)	140, 155, 569, 1238, 1584, 1789, 2036, 2379
NcoI	CCATGG	1 cut(s)	405
NdeI	CATATG	1 cut(s)	916
NlaIV	GGNNCC	6 cut(s)	265, 389, 1859, 2472, 2565, 2566
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	5 cut(s)	306, 1299, 2282, 2365, 2672
NsiI	ATGCAT	1 cut(s)	2045
NspI	RCATGY	5 cut(s)	1142, 1358, 1393, 2043, 2852
PaeI	GCATGC	3 cut(s)	1358, 1393, 2043
PasI	CCCWGGG	1 cut(s)	127
PciSI	GCTCTTC	3 cut(s)	41, 141, 2125
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	2 cut(s)	1927, 2571
PdmI	GAANNNNTTC	2 cut(s)	2245, 2865
PfeI	GAWTC	8 cut(s)	443, 451, 811, 2497, 2515, 2551, 2816, 2885
PleI	GAGTC	5 cut(s)	128, 355, 988, 2289, 2552
PpsI	GAGTC	5 cut(s)	128, 355, 988, 2289, 2552
PpuMI	RGGWCCY	1 cut(s)	2564
PshAI	GACNNNNGTC	1 cut(s)	2562
PshBI	ATTAAT	1 cut(s)	420
Psp124BI	GAGCTC	2 cut(s)	2507, 2763
Psp5II	RGGWCCY	1 cut(s)	2564
Psp6I	CCWGG	5 cut(s)	126, 336, 1213, 1587, 2871
PspFI	CCCAGC	3 cut(s)	1028, 1188, 2567
PspGI	CCWGG	5 cut(s)	126, 336, 1213, 1587, 2871
PspN4I	GGNNCC	6 cut(s)	265, 389, 1859, 2472, 2565, 2566
PspPI	GGNCC	7 cut(s)	1466, 1484, 1999, 2167, 2222, 2564, 2688
PspPPI	RGGWCCY	1 cut(s)	2564
PsrI	GAACNNNNNNTAC	2 cut(s)	1216, 1248
PstI	CTGCAG	3 cut(s)	988, 1669, 2623
PstNI	CAGNNNCTG	2 cut(s)	767, 2393
PsuI	RGATCY	5 cut(s)	94, 1543, 1630, 1857, 2470
PvuII	CAGCTG	3 cut(s)	829, 2033, 2945
RsaI	GTAC	7 cut(s)	660, 966, 1168, 1327, 2149, 2696, 2721
RsaNI	GTAC	7 cut(s)	659, 965, 1167, 1326, 2148, 2695, 2720
RseI	CAYNNNNRTG	4 cut(s)	191, 404, 2162, 2932
SacI	GAGCTC	2 cut(s)	2507, 2763
SapI	GCTCTTC	3 cut(s)	41, 141, 2125
SaqAI	TTAA	9 cut(s)	420, 909, 1103, 1535, 1715, 2345, 2529, 2537, 2544
Sau96I	GGNCC	7 cut(s)	1466, 1484, 1999, 2167, 2222, 2564, 2688
ScaI	AGTACT	1 cut(s)	2696
SchI	GAGTC	5 cut(s)	129, 355, 989, 2290, 2552
ScrFI	CCNGG	5 cut(s)	128, 338, 1215, 1589, 2873
SduI	GDGCHC	5 cut(s)	1038, 2507, 2641, 2763, 2895
SfaNI	GCATC	5 cut(s)	219, 1738, 1745, 1971, 2221
SfcI	CTRYAG	5 cut(s)	477, 588, 984, 1665, 2619
SinI	GGWCC	6 cut(s)	1484, 1999, 2167, 2222, 2564, 2688
SmiMI	CAYNNNNRTG	4 cut(s)	191, 404, 2162, 2932
SmlI	CTYRAG	5 cut(s)	101, 493, 1555, 2723, 2899
SmoI	CTYRAG	5 cut(s)	101, 493, 1555, 2723, 2899
SpeI	ACTAGT	1 cut(s)	2669
SphI	GCATGC	3 cut(s)	1358, 1393, 2043
SsiI	CCGC	8 cut(s)	153, 156, 206, 254, 385, 563, 1576, 1768
SspMI	CTAG	9 cut(s)	431, 540, 846, 1257, 1269, 1446, 1805, 2651, 2670
SstI	GAGCTC	2 cut(s)	2507, 2763
StyD4I	CCNGG	5 cut(s)	126, 336, 1213, 1587, 2871
StyI	CCWWGG	3 cut(s)	405, 888, 2361
TaaI	ACNGT	8 cut(s)	580, 795, 964, 1019, 1070, 1237, 1881, 2716
TaiI	ACGT	3 cut(s)	318, 347, 2265
TaqI	TCGA	5 cut(s)	81, 215, 838, 2549, 2655
TatI	WGTACW	4 cut(s)	964, 2147, 2694, 2719
TauI	GCSGC	3 cut(s)	158, 256, 388
TfiI	GAWTC	8 cut(s)	443, 451, 811, 2497, 2515, 2551, 2816, 2885
Tru1I	TTAA	9 cut(s)	420, 909, 1103, 1535, 1715, 2345, 2529, 2537, 2544
Tru9I	TTAA	9 cut(s)	420, 909, 1103, 1535, 1715, 2345, 2529, 2537, 2544
TscAI	CASTG	8 cut(s)	967, 1381, 1938, 2374, 2461, 2494, 2605, 2900
TseFI	GTSAC	5 cut(s)	306, 1299, 2282, 2365, 2672
TseI	GCWGC	9 cut(s)	87, 237, 687, 767, 1499, 2030, 2387, 2804, 2845
Tsp45I	GTSAC	5 cut(s)	306, 1299, 2282, 2365, 2672
TspDTI	ATGAA	9 cut(s)	390, 919, 1125, 1283, 2189, 2367, 2510, 2760, 2898
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	8 cut(s)	967, 1381, 1938, 2374, 2461, 2494, 2605, 2900
VneI	GTGCAC	1 cut(s)	2637
VpaK11BI	GGWCC	6 cut(s)	1484, 1999, 2167, 2222, 2564, 2688
VspI	ATTAAT	1 cut(s)	420
XapI	RAATTY	7 cut(s)	181, 377, 1614, 2086, 2119, 2422, 2706
XceI	RCATGY	5 cut(s)	1142, 1358, 1393, 2043, 2852
XcmI	CCANNNNNNNNNTGG	1 cut(s)	895
XmiI	GTMKAC	4 cut(s)	347, 591, 1126, 2055
XmnI	GAANNNNTTC	2 cut(s)	2245, 2865
XspI	CTAG	9 cut(s)	431, 540, 846, 1257, 1269, 1446, 1805, 2651, 2670
ZrmI	AGTACT	1 cut(s)	2696
Zsp2I	ATGCAT	1 cut(s)	2045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.