Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

18887320 .. 18899329

Gene Structure 12010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTCGATCGAAGAGAGAAGACAAGAGATCCGAGCTCCTTGGCCACTTCGAAGGCCGATGAATCTACCACTGCGGTGAACCCGATGAGCTCATTGATGGATGCAACCAACTACATAGATCTAGATCGTGATCCTGGAAGTCTGTACTTCAATCAAATCTTGACAGTTGTACTTGAGATTTTGGATGATTTTGACTCCTCCATCCGGGAGCTCTCTCTTTCATTGATTATTGAAAAGCTTAATAAGAACCAGAAAGCTGCAATGGAAGATTCTGTTGAGATCATAATTGAGAAGCTGCTGCATGTTACAAAGGACTTAATTCCCCAGGTTGCAAATGAATTAGAGCACTGCTCGAGAATTGTTCTGTCGCTGTATGATCCATACAGATGTTTAAGTGTATGTATCCATTCCAGTACTCCACCCAGCCTTTGTGAAATTTTTATCAGCAGTGAGAAAACCGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

155

Amino Acids

17.35

Weight (kDa)

4.67

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	3 cut(s)	23, 125, 371
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	435
AfaI	GTAC	3 cut(s)	146, 171, 415
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgeI	ACCGGT	1 cut(s)	458
AgsI	TTSAA	2 cut(s)	151, 233
AjnI	CCWGG	2 cut(s)	133, 324
AleI	CACNNNNGTG	1 cut(s)	74
AluBI	AGCT	6 cut(s)	36, 90, 211, 238, 257, 295
AluI	AGCT	6 cut(s)	36, 90, 211, 238, 257, 295
Alw21I	GWGCWC	4 cut(s)	38, 92, 213, 348
AlwI	GGATC	3 cut(s)	23, 125, 371
Ama87I	CYCGRG	1 cut(s)	352
AoxI	GGCC	2 cut(s)	42, 54
ApeKI	GCWGC	3 cut(s)	257, 295, 298
ApoI	RAATTY	1 cut(s)	435
AsiGI	ACCGGT	1 cut(s)	458
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	88
AsuII	TTCGAA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	44
BanII	GRGCYC	3 cut(s)	38, 92, 213
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	4 cut(s)	38, 92, 213, 348
BbvI	GCAGC	3 cut(s)	244, 282, 285
BccI	CCATC	2 cut(s)	91, 209
BciT130I	CCWGG	2 cut(s)	135, 326
BciVI	GTATCC	1 cut(s)	413
BcnI	CCSGG	1 cut(s)	206
BfaI	CTAG	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	413
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	3 cut(s)	258, 296, 299
BlsI	GCNGC	3 cut(s)	259, 297, 300
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	3 cut(s)	135, 206, 326
BmeT110I	CYCGRG	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	3 cut(s)	135, 206, 326
BmsI	GCATC	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	26
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	206
BsaBI	GATNNNNATC	2 cut(s)	123, 129
BsaJI	CCNNGG	2 cut(s)	39, 324
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	2 cut(s)	123, 129
BseBI	CCWGG	2 cut(s)	135, 326
BseDI	CCNNGG	2 cut(s)	39, 324
BseGI	GGATG	3 cut(s)	106, 190, 201
BseJI	GATNNNNATC	2 cut(s)	123, 129
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	3 cut(s)	244, 282, 285
BseYI	CCCAGC	1 cut(s)	422
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	2 cut(s)	44, 56
BshTI	ACCGGT	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	10
BsiHKAI	GWGCWC	4 cut(s)	38, 92, 213, 348
BsiHKCI	CYCGRG	1 cut(s)	352
BsiSI	CCGG	2 cut(s)	205, 459
BslI	CCNNNNNNNGG	1 cut(s)	204
BsnI	GGCC	2 cut(s)	44, 56
BsoBI	CYCGRG	1 cut(s)	352
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	4 cut(s)	38, 92, 213, 348
Bsp143I	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	2 cut(s)	44, 56
BspLI	GGNNCC	1 cut(s)	463
BspPI	GGATC	3 cut(s)	23, 125, 371
BspT104I	TTCGAA	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	411
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	2 cut(s)	39, 324
BssMI	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	135, 326
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	7
BstBI	TTCGAA	1 cut(s)	50
BstF5I	GGATG	3 cut(s)	106, 190, 201
BstKTI	GATC	7 cut(s)	10, 31, 121, 127, 133, 282, 379
BstMBI	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
BstMCI	CGRYCG	1 cut(s)	10
BstNI	CCWGG	2 cut(s)	135, 326
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	133, 204, 324
BstV1I	GCAGC	3 cut(s)	244, 282, 285
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	2 cut(s)	28, 118
BstYI	RGATCY	2 cut(s)	28, 118
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	44, 56
BtsCI	GGATG	3 cut(s)	106, 190, 201
BtsI	GCAGTG	3 cut(s)	69, 346, 454
BtsIMutI	CAGTG	3 cut(s)	69, 346, 454
Cfr10I	RCCGGY	1 cut(s)	458
Csp6I	GTAC	3 cut(s)	145, 170, 414
CspAI	ACCGGT	1 cut(s)	458
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	9 cut(s)	36, 44, 56, 90, 211, 238, 257, 295, 426
CviKI_1	RGCY	9 cut(s)	36, 44, 56, 90, 211, 238, 257, 295, 426
CviQI	GTAC	3 cut(s)	145, 170, 414
DpnI	GATC	7 cut(s)	9, 30, 120, 126, 132, 281, 378
DpnII	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Ecl136II	GAGCTC	3 cut(s)	36, 90, 211
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	3 cut(s)	38, 92, 213
Eco53kI	GAGCTC	3 cut(s)	36, 90, 211
Eco88I	CYCGRG	1 cut(s)	352
EcoICRI	GAGCTC	3 cut(s)	36, 90, 211
EcoRII	CCWGG	2 cut(s)	133, 324
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	3 cut(s)	38, 92, 213
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	305
FaiI	YATR	6 cut(s)	116, 284, 303, 375, 382, 400
FatI	CATG	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	258, 296, 299
FokI	GGATG	3 cut(s)	113, 188, 197
FriOI	GRGCYC	3 cut(s)	38, 92, 213
Fsp4HI	GCNGC	3 cut(s)	258, 296, 299
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	3 cut(s)	258, 296, 299
GsaI	CCCAGC	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	44, 56
HapII	CCGG	2 cut(s)	205, 459
Hin1II	CATG	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	3 cut(s)	62, 194, 269
HpaII	CCGG	2 cut(s)	205, 459
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	5 cut(s)	122, 128, 160, 354, 465
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	4 cut(s)	104, 260, 301, 332
Hsp92II	CATG	1 cut(s)	305
Kzo9I	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
LmnI	GCTCC	2 cut(s)	41, 208
LpnPI	CCDG	8 cut(s)	120, 147, 218, 263, 311, 338, 424, 436
Lsp1109I	GCAGC	3 cut(s)	244, 282, 285
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	7 cut(s)	9, 30, 120, 126, 132, 281, 378
MboI	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
MboII	GAAGA	3 cut(s)	24, 31, 278
MflI	RGATCY	2 cut(s)	28, 118
MhlI	GDGCHC	4 cut(s)	38, 92, 213, 348
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	5 cut(s)	285, 318, 338, 357, 435
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	1 cut(s)	208
Mox20I	TGGCCA	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	3 cut(s)	240, 317, 392
MslI	CAYNNNNRTG	2 cut(s)	74, 385
Msp20I	TGGCCA	1 cut(s)	44
MspI	CCGG	2 cut(s)	205, 459
MspR9I	CCNGG	3 cut(s)	135, 206, 326
MvaI	CCWGG	2 cut(s)	135, 326
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	1 cut(s)	463
NspI	RCATGY	1 cut(s)	305
NspV	TTCGAA	1 cut(s)	50
OliI	CACNNNNGTG	1 cut(s)	74
PaeR7I	CTCGAG	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	62, 269
PfoI	TCCNGGA	2 cut(s)	133, 204
PinAI	ACCGGT	1 cut(s)	458
PkrI	GCNGC	3 cut(s)	259, 297, 300
Ple19I	CGATCG	1 cut(s)	10
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp124BI	GAGCTC	3 cut(s)	38, 92, 213
Psp6I	CCWGG	2 cut(s)	133, 324
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	133, 324
PspN4I	GGNNCC	1 cut(s)	463
PsuI	RGATCY	2 cut(s)	28, 118
PvuI	CGATCG	1 cut(s)	10
RsaI	GTAC	3 cut(s)	146, 171, 415
RsaNI	GTAC	3 cut(s)	145, 170, 414
RseI	CAYNNNNRTG	2 cut(s)	74, 385
SacI	GAGCTC	3 cut(s)	38, 92, 213
SaqAI	TTAA	3 cut(s)	240, 317, 392
SatI	GCNGC	3 cut(s)	258, 296, 299
Sau3AI	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	3 cut(s)	135, 206, 326
SduI	GDGCHC	4 cut(s)	38, 92, 213, 348
SetI	ASST	7 cut(s)	38, 92, 213, 240, 259, 297, 330
SfaNI	GCATC	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	352
SmiMI	CAYNNNNRTG	2 cut(s)	74, 385
SmlI	CTYRAG	2 cut(s)	173, 352
SmoI	CTYRAG	2 cut(s)	173, 352
Sse9I	AATT	5 cut(s)	285, 318, 338, 357, 435
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	122
SstI	GAGCTC	3 cut(s)	38, 92, 213
StyD4I	CCNGG	3 cut(s)	133, 204, 324
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	4 cut(s)	6, 10, 50, 353
TasI	AATT	5 cut(s)	285, 318, 338, 357, 435
TatI	WGTACW	3 cut(s)	144, 169, 413
TfiI	GAWTC	2 cut(s)	62, 269
Tru1I	TTAA	3 cut(s)	240, 317, 392
Tru9I	TTAA	3 cut(s)	240, 317, 392
TscAI	CASTG	3 cut(s)	76, 353, 454
TseI	GCWGC	3 cut(s)	257, 295, 298
TspDTI	ATGAA	3 cut(s)	75, 210, 351
TspRI	CASTG	3 cut(s)	76, 353, 454
XapI	RAATTY	1 cut(s)	435
XbaI	TCTAGA	1 cut(s)	121
XceI	RCATGY	1 cut(s)	305
XhoI	CTCGAG	1 cut(s)	352
XspI	CTAG	1 cut(s)	122
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.