Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

49290080 .. 49291231

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029796

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCTTCAGTTATAAGAGACGGAGACTCTATTTCTGTTCAACTTCACATACCATGGCCAGGCTTTGCAATGGTCCACAAAGCCCAACTTGAGATTTCAGCAACATTTGATGTTGAAACACTGCCAACTGTTTCATCTTACAACATAAAGAGGGCTTCCGAGAGAATCCACGAAATGAGTTTCATTGAAGAGAATACTGCCCCTCATAAGAAAAATGCGACAGGAAGGATATCTGCAGGCAGGGGGAGAAGTTTTGATGATAGCCAGCTCTCACAGGAGATGTTAAATTATGTAGAAGGTCCAGCATCGTTCAATGATGCTTTGGGCGTAGTACTGAGTTCTTCTTCAGACTGGTCCGCCAGGGTTGCTGCATTTAATTATCTTCGGTCTTTGTTGCAGCAAGGCCAAAAAGGAATTCAAGAAGTGATTCAGAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

147

Amino Acids

16.13

Weight (kDa)

5.76

Isoelectric Point (pI)

59.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	14
AciI	CCGC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	2 cut(s)	414, 433
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	5 cut(s)	41, 116, 188, 313, 419
AjnI	CCWGG	2 cut(s)	58, 359
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	12, 18
AoxI	GGCC	2 cut(s)	56, 403
ApeKI	GCWGC	2 cut(s)	368, 397
ApoI	RAATTY	2 cut(s)	414, 433
Asp700I	GAANNNNTTC	1 cut(s)	426
AspS9I	GGNCC	3 cut(s)	73, 299, 354
AvaII	GGWCC	3 cut(s)	73, 299, 354
BalI	TGGCCA	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	355, 409
BciT130I	CCWGG	2 cut(s)	60, 361
BcoDI	GTCTC	2 cut(s)	12, 18
BfaI	CTAG	1 cut(s)	439
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	2 cut(s)	369, 398
BlsI	GCNGC	2 cut(s)	370, 399
BmcAI	AGTACT	1 cut(s)	333
Bme1390I	CCNGG	2 cut(s)	60, 361
Bme18I	GGWCC	3 cut(s)	73, 299, 354
BmgT120I	GGNCC	3 cut(s)	73, 299, 354
BmrFI	CCNGG	2 cut(s)	60, 361
BmsI	GCATC	2 cut(s)	307, 314
BpuEI	CTTGAG	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	53, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	60, 361
BseDI	CCNNGG	2 cut(s)	53, 360
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	355, 409
BshFI	GGCC	2 cut(s)	58, 405
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	2 cut(s)	12, 18
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	58, 405
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	1 cut(s)	357
BspANI	GGCC	2 cut(s)	58, 405
BspCNI	CTCAG	1 cut(s)	327
BspMAI	CTGCAG	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	53, 360
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	60, 361
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	238, 266
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	1 cut(s)	53
BstMAI	GTCTC	2 cut(s)	12, 18
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	2 cut(s)	60, 361
BstSCI	CCNGG	2 cut(s)	58, 359
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	355, 409
BsuRI	GGCC	2 cut(s)	58, 405
BtgI	CCRYGG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	238, 266
Cfr13I	GGNCC	3 cut(s)	73, 299, 354
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	8 cut(s)	5, 58, 63, 83, 155, 264, 268, 405
CviKI_1	RGCY	8 cut(s)	5, 58, 63, 83, 155, 264, 268, 405
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	335
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
EciI	GGCGGA	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	53
Eco32I	GATATC	1 cut(s)	231
Eco47I	GGWCC	3 cut(s)	73, 299, 354
Eco57I	CTGAAG	1 cut(s)	330
EcoRI	GAATTC	1 cut(s)	414
EcoRII	CCWGG	2 cut(s)	58, 359
EcoRV	GATATC	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	57
FaiI	YATR	6 cut(s)	14, 50, 55, 146, 207, 291
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FatI	CATG	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	369, 398
Fsp4HI	GCNGC	2 cut(s)	369, 398
FspBI	CTAG	1 cut(s)	439
GluI	GCNGC	2 cut(s)	369, 398
HaeIII	GGCC	2 cut(s)	58, 405
Hin1II	CATG	1 cut(s)	57
HinfI	GANTC	3 cut(s)	26, 165, 427
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	3 cut(s)	160, 349, 432
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	219, 290
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	4 cut(s)	68, 236, 371, 397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	1 cut(s)	57
Lsp1109I	GCAGC	2 cut(s)	355, 409
LweI	GCATC	2 cut(s)	307, 314
MaeI	CTAG	1 cut(s)	439
MboII	GAAGA	4 cut(s)	200, 333, 336, 374
MlsI	TGGCCA	1 cut(s)	58
MluCI	AATT	4 cut(s)	286, 376, 414, 433
MluNI	TGGCCA	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	2 cut(s)	144, 213
Mox20I	TGGCCA	1 cut(s)	58
MroXI	GAANNNNTTC	1 cut(s)	426
MscI	TGGCCA	1 cut(s)	58
MseI	TTAA	2 cut(s)	284, 375
Msp20I	TGGCCA	1 cut(s)	58
MspR9I	CCNGG	2 cut(s)	60, 361
MvaI	CCWGG	2 cut(s)	60, 361
MwoI	GCNNNNNNNGC	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	53
NlaIII	CATG	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	165, 427
PkrI	GCNGC	2 cut(s)	370, 399
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PsiI	TTATAA	1 cut(s)	14
Psp6I	CCWGG	2 cut(s)	58, 359
PspGI	CCWGG	2 cut(s)	58, 359
PspPI	GGNCC	3 cut(s)	73, 299, 354
PstI	CTGCAG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	284, 375
SatI	GCNGC	2 cut(s)	369, 398
Sau96I	GGNCC	3 cut(s)	73, 299, 354
ScaI	AGTACT	1 cut(s)	333
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	60, 361
SetI	ASST	2 cut(s)	270, 301
SfaNI	GCATC	2 cut(s)	307, 314
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	3 cut(s)	73, 299, 354
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	286, 376, 414, 433
SsiI	CCGC	1 cut(s)	357
SspMI	CTAG	1 cut(s)	439
StyD4I	CCNGG	2 cut(s)	58, 359
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	130
TaqII	GACCGA	1 cut(s)	375
TasI	AATT	4 cut(s)	286, 376, 414, 433
TatI	WGTACW	1 cut(s)	331
TfiI	GAWTC	2 cut(s)	165, 427
Tru1I	TTAA	2 cut(s)	284, 375
Tru9I	TTAA	2 cut(s)	284, 375
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	2 cut(s)	368, 397
TspDTI	ATGAA	2 cut(s)	123, 172
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	126
VpaK11BI	GGWCC	3 cut(s)	73, 299, 354
XapI	RAATTY	2 cut(s)	414, 433
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	1 cut(s)	439
ZrmI	AGTACT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.