Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Forward (+)

47957985 .. 47958350

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00319790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGACCGGAGTGGAGCGCCTCCACCAGCTTATCAAAGCTTTCGGGAAGAGCCTCACTTTGCCGGAGGTCATCGCCCTTGTCGATTGCTGCATGGATCTTCTCAAGGACAAAAACTTCCGAGTCTCCCGGGCGCTCTTCCGCCGCCATCCTCTCGGCGACCATCTCAAATTCCATTTCAATGAGTTTGTCCCCACCGTCATCGCCAAGCGACTGTTCGCGACGCCGCCGGAGGCTCCCCGCCTACTCTTATGGAGGTTTGTTTGTTTGTTTGTTCCTCTCTTGCTCCTCCTCCACTTTTTTGGTTCAGTTTCTCAAATGTTCTTGATGCATGCTAAAGTTGGTGATTCCCGAAGCCGAATCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

121

Amino Acids

13.97

Weight (kDa)

10.14

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	218
AciI	CCGC	4 cut(s)	139, 142, 224, 238
AclWI	GGATC	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	167
AcyI	GRCGYC	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	2 cut(s)	28, 38
AluI	AGCT	2 cut(s)	28, 38
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	18, 133
AsuC2I	CCSGG	2 cut(s)	127, 128
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	153, 168
BcnI	CCSGG	2 cut(s)	127, 128
BcoDI	GTCTC	1 cut(s)	127
BfoI	RGCGCY	2 cut(s)	19, 134
BisI	GCNGC	3 cut(s)	88, 142, 224
BlsI	GCNGC	3 cut(s)	89, 143, 225
Bme1390I	CCNGG	2 cut(s)	127, 128
BmeT110I	CYCGRG	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	127, 128
BmsI	GCATC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	127, 128
BsaHI	GRCGYC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	5
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	145
BseRI	GAGGAG	2 cut(s)	275, 278
BseXI	GCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	4 cut(s)	6, 62, 127, 227
BslFI	GGGAC	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	173
BsoBI	CYCGRG	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	94
Bsp68I	TCGCGA	1 cut(s)	218
BspACI	CCGC	4 cut(s)	139, 142, 224, 238
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	1 cut(s)	102
BspQI	GCTCTTC	2 cut(s)	41, 140
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	94
BssNI	GRCGYC	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	196, 213
Bst6I	CTCTTC	2 cut(s)	41, 140
BstACI	GRCGYC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	2 cut(s)	19, 134
BstHHI	GCGC	2 cut(s)	18, 133
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	125, 126
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	94
BtgZI	GCGATG	2 cut(s)	55, 184
BtsCI	GGATG	1 cut(s)	145
BtuMI	TCGCGA	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	330
CfoI	GCGC	2 cut(s)	18, 133
Cfr9I	CCCGGG	1 cut(s)	126
CseI	GACGC	1 cut(s)	229
CviAII	CATG	2 cut(s)	91, 329
CviJI	RGCY	5 cut(s)	28, 38, 51, 233, 354
CviKI_1	RGCY	5 cut(s)	28, 38, 51, 233, 354
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	41, 140
EarI	CTCTTC	2 cut(s)	41, 140
EciI	GGCGGA	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	330
FaeI	CATG	2 cut(s)	94, 332
FaiI	YATR	3 cut(s)	92, 250, 330
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	90, 328
FauI	CCCGC	1 cut(s)	245
Fnu4HI	GCNGC	3 cut(s)	88, 142, 224
FokI	GGATG	1 cut(s)	132
Fsp4HI	GCNGC	3 cut(s)	88, 142, 224
GlaI	GCGC	2 cut(s)	17, 132
GluI	GCNGC	3 cut(s)	88, 142, 224
HaeII	RGCGCY	2 cut(s)	19, 134
HapII	CCGG	4 cut(s)	6, 62, 127, 227
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	2 cut(s)	18, 133
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	94, 332
Hin6I	GCGC	2 cut(s)	16, 131
HinP1I	GCGC	2 cut(s)	16, 131
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	3 cut(s)	120, 344, 357
HpaII	CCGG	4 cut(s)	6, 62, 127, 227
HphI	GGTGA	1 cut(s)	353
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	4 cut(s)	43, 217, 322, 348
Hpy99I	CGWCG	1 cut(s)	223
HpyCH4III	ACNGT	2 cut(s)	196, 213
HpyCH4V	TGCA	2 cut(s)	90, 328
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	94, 332
HspAI	GCGC	2 cut(s)	16, 131
Kzo9I	GATC	1 cut(s)	94
LguI	GCTCTTC	2 cut(s)	41, 140
LmnI	GCTCC	3 cut(s)	13, 238, 288
LpnPI	CCDG	5 cut(s)	19, 38, 75, 140, 240
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	315
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	3 cut(s)	58, 89, 127
MflI	RGATCY	1 cut(s)	94
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	9 cut(s)	29, 58, 62, 159, 223, 246, 285, 296, 299
Mph1103I	ATGCAT	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	4 cut(s)	6, 62, 127, 227
MspR9I	CCNGG	2 cut(s)	127, 128
MvnI	CGCG	1 cut(s)	218
NciI	CCSGG	2 cut(s)	127, 128
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	94, 332
NlaIV	GGNNCC	1 cut(s)	234
NmeAIII	GCCGAG	1 cut(s)	132
NruI	TCGCGA	1 cut(s)	218
NsiI	ATGCAT	1 cut(s)	330
NspI	RCATGY	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	332
PciSI	GCTCTTC	2 cut(s)	41, 140
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	344, 357
PkrI	GCNGC	3 cut(s)	89, 143, 225
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	94
RruI	TCGCGA	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	177
SapI	GCTCTTC	2 cut(s)	41, 140
SatI	GCNGC	3 cut(s)	88, 142, 224
Sau3AI	GATC	1 cut(s)	94
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	2 cut(s)	127, 128
SetI	ASST	4 cut(s)	30, 40, 69, 257
SfaNI	GCATC	1 cut(s)	315
SmaI	CCCGGG	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	4 cut(s)	139, 142, 224, 238
StyD4I	CCNGG	2 cut(s)	125, 126
TaaI	ACNGT	2 cut(s)	196, 213
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	167
TauI	GCSGC	2 cut(s)	144, 226
TfiI	GAWTC	2 cut(s)	344, 357
TseI	GCWGC	1 cut(s)	87
TspMI	CCCGGG	1 cut(s)	126
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	332
XmaI	CCCGGG	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.