Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

53987413 .. 53987640

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG376700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGAGGAAGTGCTTGAACTCGCATGCGCCAAAGACACCAAGAAGCGCATGGCCGGAGTGGAACGCCCCCACCAGCTTCTCGAAGCTTCCAGGAAGAGCCTCACTTCACCAGAGCCCGGAGGTCACTGCGCTCATCGATTGCTGCACGAATCTTCTCAAGGACAGCAAATTCCGAGTCTCCCAGGGCGCTCTTCAGGCCCTCGCCTCCGCCGCCTTCCTCTTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

75

Amino Acids

8.32

Weight (kDa)

10.03

Isoelectric Point (pI)

78.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	208, 211
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	2 cut(s)	89, 181
AluBI	AGCT	2 cut(s)	76, 86
AluI	AGCT	2 cut(s)	76, 86
Alw26I	GTCTC	1 cut(s)	182
AoxI	GGCC	2 cut(s)	51, 196
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	168
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
AspLEI	GCGC	4 cut(s)	29, 48, 131, 189
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	129
BciT130I	CCWGG	2 cut(s)	91, 183
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	190
BisI	GCNGC	2 cut(s)	143, 211
BlsI	GCNGC	2 cut(s)	144, 212
Bme1390I	CCNGG	3 cut(s)	91, 117, 183
BmgT120I	GGNCC	1 cut(s)	197
BmrFI	CCNGG	3 cut(s)	91, 117, 183
BpuEI	CTTGAG	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	181, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
BseBI	CCWGG	2 cut(s)	91, 183
BseCI	ATCGAT	1 cut(s)	136
BseDI	CCNNGG	2 cut(s)	181, 182
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	129
BsgI	GTGCAG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	53, 198
BshVI	ATCGAT	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	54, 117
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	53, 198
Bsp1286I	GDGCHC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	208, 211
BspANI	GGCC	2 cut(s)	53, 198
BspDI	ATCGAT	1 cut(s)	136
BspQI	GCTCTTC	2 cut(s)	89, 196
BssECI	CCNNGG	2 cut(s)	181, 182
Bst2UI	CCWGG	2 cut(s)	91, 183
Bst6I	CTCTTC	3 cut(s)	89, 196, 225
BstC8I	GCNNGC	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	4 cut(s)	29, 48, 131, 189
BstMAI	GTCTC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 210
BstNI	CCWGG	2 cut(s)	91, 183
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	3 cut(s)	89, 115, 181
BstV1I	GCAGC	1 cut(s)	129
Bsu15I	ATCGAT	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	53, 198
BsuTUI	ATCGAT	1 cut(s)	136
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	25
CfoI	GCGC	4 cut(s)	29, 48, 131, 189
Cfr13I	GGNCC	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	136
CviAII	CATG	2 cut(s)	24, 49
CviJI	RGCY	6 cut(s)	53, 76, 86, 99, 115, 198
CviKI_1	RGCY	6 cut(s)	53, 76, 86, 99, 115, 198
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	3 cut(s)	89, 196, 225
EarI	CTCTTC	3 cut(s)	89, 196, 225
EciI	GGCGGA	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	89, 181
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	2 cut(s)	27, 52
FaiI	YATR	2 cut(s)	25, 50
FatI	CATG	2 cut(s)	23, 48
Fnu4HI	GCNGC	2 cut(s)	143, 211
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	2 cut(s)	143, 211
GlaI	GCGC	4 cut(s)	28, 47, 130, 188
GluI	GCNGC	2 cut(s)	143, 211
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	53, 198
HapII	CCGG	2 cut(s)	54, 117
HhaI	GCGC	4 cut(s)	29, 48, 131, 189
Hin1II	CATG	2 cut(s)	27, 52
Hin6I	GCGC	4 cut(s)	27, 46, 129, 187
HinP1I	GCGC	4 cut(s)	27, 46, 129, 187
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	2 cut(s)	149, 175
HpaII	CCGG	2 cut(s)	54, 117
HphI	GGTGA	1 cut(s)	99
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	224
HpyCH4V	TGCA	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 210
Hsp92II	CATG	2 cut(s)	27, 52
HspAI	GCGC	4 cut(s)	27, 46, 129, 187
LguI	GCTCTTC	2 cut(s)	89, 196
LpnPI	CCDG	9 cut(s)	67, 76, 86, 103, 123, 130, 168, 180, 195
Lsp1109I	GCAGC	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	122
MboII	GAAGA	4 cut(s)	106, 144, 183, 212
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	5 cut(s)	110, 113, 210, 215, 228
MspI	CCGG	2 cut(s)	54, 117
MspR9I	CCNGG	3 cut(s)	91, 117, 183
MvaI	CCWGG	2 cut(s)	91, 183
MwoI	GCNNNNNNNGC	2 cut(s)	195, 210
NciI	CCSGG	1 cut(s)	117
NlaIII	CATG	2 cut(s)	27, 52
NmuCI	GTSAC	1 cut(s)	122
NspI	RCATGY	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	27
PasI	CCCWGGG	1 cut(s)	182
PciSI	GCTCTTC	2 cut(s)	89, 196
PfeI	GAWTC	1 cut(s)	149
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	144, 212
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	89, 181
PspGI	CCWGG	2 cut(s)	89, 181
PspPI	GGNCC	1 cut(s)	197
SapI	GCTCTTC	2 cut(s)	89, 196
SatI	GCNGC	2 cut(s)	143, 211
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	3 cut(s)	91, 117, 183
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	3 cut(s)	78, 88, 124
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	2 cut(s)	208, 211
StyD4I	CCNGG	3 cut(s)	89, 115, 181
TaqI	TCGA	2 cut(s)	81, 136
TasI	AATT	1 cut(s)	168
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	149
TscAI	CASTG	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	122
TspRI	CASTG	1 cut(s)	131
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	1 cut(s)	27
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.