Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

18728851 .. 18736496

Gene Structure 7646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG108200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGGTCCCAGTACTTCAATCAAATCTTGACAGTTGTACTTGAGATTTTGGATGATTTTGACTCCTCCATCCGGGAGCTCTCTCTTTCATTGATTATTGAAAAGCTTAATAAGAACCAGAAAGCTGCAATGGAAGATTCTGTTGAGATCATAATTGAGAAGCTGCTGCATGTTACAAAGGACTTAATTCCCCAGGTTGCAAATGAATTAGAGCACTGCTCGAGAATTGTTCTGTCGCTGTATGATCCATACAGATGTTTAAGTGTATGTATCCATTCCAGTACTCCACCCAGCCTTTGTGAAAATTTTATCAGCGGTGAGAAAACCGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

111

Amino Acids

12.48

Weight (kDa)

4.78

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	304
AfaI	GTAC	3 cut(s)	14, 39, 283
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	2 cut(s)	19, 101
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	4 cut(s)	79, 106, 125, 163
AluI	AGCT	4 cut(s)	79, 106, 125, 163
Alw21I	GWGCWC	2 cut(s)	81, 216
AlwI	GGATC	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	220
ApeKI	GCWGC	3 cut(s)	125, 163, 166
ApoI	RAATTY	1 cut(s)	304
AsiGI	ACCGGT	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	6
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	329
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	81, 216
BbvI	GCAGC	3 cut(s)	112, 150, 153
BccI	CCATC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	281
BisI	GCNGC	3 cut(s)	126, 164, 167
BlsI	GCNGC	3 cut(s)	127, 165, 168
BmcAI	AGTACT	2 cut(s)	14, 283
Bme1390I	CCNGG	2 cut(s)	74, 194
Bme18I	GGWCC	1 cut(s)	6
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	3 cut(s)	7, 8, 331
BmrFI	CCNGG	2 cut(s)	74, 194
BmrI	ACTGGG	1 cut(s)	4
BmuI	ACTGGG	1 cut(s)	4
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	2 cut(s)	10, 279
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	2 cut(s)	58, 69
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	135
BseNI	ACTGG	2 cut(s)	10, 279
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	3 cut(s)	112, 150, 153
BseYI	CCCAGC	1 cut(s)	290
BshTI	ACCGGT	1 cut(s)	326
BsiHKAI	GWGCWC	2 cut(s)	81, 216
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	2 cut(s)	73, 327
BslI	CCNNNNNNNGG	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	220
Bsp1286I	GDGCHC	2 cut(s)	81, 216
Bsp143I	GATC	2 cut(s)	147, 244
BspACI	CCGC	1 cut(s)	315
BspLI	GGNNCC	3 cut(s)	7, 8, 331
BspPI	GGATC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	10, 279
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	147, 244
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	58, 69
BstKTI	GATC	2 cut(s)	150, 247
BstMBI	GATC	2 cut(s)	147, 244
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	72, 192
BstV1I	GCAGC	3 cut(s)	112, 150, 153
BsuI	GTATCC	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	58, 69
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	6
Csp6I	GTAC	3 cut(s)	13, 38, 282
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	5 cut(s)	79, 106, 125, 163, 294
CviKI_1	RGCY	5 cut(s)	79, 106, 125, 163, 294
CviQI	GTAC	3 cut(s)	13, 38, 282
DpnI	GATC	2 cut(s)	149, 246
DpnII	GATC	2 cut(s)	147, 244
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	1 cut(s)	173
FaiI	YATR	5 cut(s)	152, 171, 243, 250, 268
FatI	CATG	1 cut(s)	169
Fnu4HI	GCNGC	3 cut(s)	126, 164, 167
FokI	GGATG	2 cut(s)	56, 65
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	3 cut(s)	126, 164, 167
GluI	GCNGC	3 cut(s)	126, 164, 167
GsaI	CCCAGC	1 cut(s)	294
HapII	CCGG	2 cut(s)	73, 327
Hin1II	CATG	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	62, 137
HpaII	CCGG	2 cut(s)	73, 327
HphI	GGTGA	1 cut(s)	329
Hpy188III	TCNNGA	3 cut(s)	28, 222, 333
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	3 cut(s)	128, 169, 200
Hsp92II	CATG	1 cut(s)	173
KflI	GGGWCCC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	147, 244
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	7 cut(s)	23, 86, 131, 179, 206, 292, 304
Lsp1109I	GCAGC	3 cut(s)	112, 150, 153
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	149, 246
MboI	GATC	2 cut(s)	147, 244
MboII	GAAGA	1 cut(s)	146
MhlI	GDGCHC	2 cut(s)	81, 216
MluCI	AATT	5 cut(s)	153, 186, 206, 225, 304
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	1 cut(s)	76
MseI	TTAA	3 cut(s)	108, 185, 260
MslI	CAYNNNNRTG	1 cut(s)	253
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	2 cut(s)	73, 327
MspR9I	CCNGG	2 cut(s)	74, 194
MvaI	CCWGG	1 cut(s)	194
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	2 cut(s)	147, 244
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	3 cut(s)	7, 8, 331
NspI	RCATGY	1 cut(s)	173
PaeR7I	CTCGAG	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	137
PfoI	TCCNGGA	1 cut(s)	72
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	127, 165, 168
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	81
Psp5II	RGGWCCY	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	3 cut(s)	7, 8, 331
PspPI	GGNCC	1 cut(s)	6
PspPPI	RGGWCCY	1 cut(s)	6
RsaI	GTAC	3 cut(s)	14, 39, 283
RsaNI	GTAC	3 cut(s)	13, 38, 282
RseI	CAYNNNNRTG	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	108, 185, 260
SatI	GCNGC	3 cut(s)	126, 164, 167
Sau3AI	GATC	2 cut(s)	147, 244
Sau96I	GGNCC	1 cut(s)	6
ScaI	AGTACT	2 cut(s)	14, 283
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	74, 194
SduI	GDGCHC	2 cut(s)	81, 216
SetI	ASST	5 cut(s)	81, 108, 127, 165, 198
Sfr274I	CTCGAG	1 cut(s)	220
SinI	GGWCC	1 cut(s)	6
SlaI	CTCGAG	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	253
SmlI	CTYRAG	2 cut(s)	41, 220
SmoI	CTYRAG	2 cut(s)	41, 220
Sse9I	AATT	5 cut(s)	153, 186, 206, 225, 304
SsiI	CCGC	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	72, 192
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	221
TasI	AATT	5 cut(s)	153, 186, 206, 225, 304
TatI	WGTACW	3 cut(s)	12, 37, 281
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	3 cut(s)	108, 185, 260
Tru9I	TTAA	3 cut(s)	108, 185, 260
TscAI	CASTG	1 cut(s)	221
TseI	GCWGC	3 cut(s)	125, 163, 166
TspDTI	ATGAA	2 cut(s)	78, 219
TspRI	CASTG	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	6
XapI	RAATTY	1 cut(s)	304
XceI	RCATGY	1 cut(s)	173
XhoI	CTCGAG	1 cut(s)	220
ZrmI	AGTACT	2 cut(s)	14, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.