Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

24938854 .. 24939132

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG127100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAGGAAGTGCTTGAACTCACACGCGCCAAGGACACCAAGGAGCGCCTGGCCGGAGTGGATCGCCTCCACCAGCTTCTCAAAGCTTCCAGGAAGAGCCTACACCGGAGCCTGGAGGTCACTGCGCTTATCGATTGCTGCACGAATCTTCTCAAGGATAGCAACTTCCGAGTCTCCCAGGGCACTCTTCAGGCCCTCACCTCCACCGCCGTCCTCTTCGGCGACCATCTCCAGCTCCATTTCGCGACGGCCGAAGGCTCCTTCTTACTAGAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

92

Amino Acids

10.31

Weight (kDa)

6.9

Isoelectric Point (pI)

22.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	27, 245
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	1 cut(s)	69
AcoI	YGGCCR	2 cut(s)	51, 249
AcuI	CTGAAG	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	4 cut(s)	48, 89, 111, 177
AluBI	AGCT	3 cut(s)	76, 86, 235
AluI	AGCT	3 cut(s)	76, 86, 235
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	69
AoxI	GGCC	3 cut(s)	51, 192, 249
ApeKI	GCWGC	1 cut(s)	138
AspLEI	GCGC	3 cut(s)	29, 48, 127
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	190
BaeGI	GKGCMC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	1 cut(s)	234
BceAI	ACGGC	2 cut(s)	194, 264
BciT130I	CCWGG	4 cut(s)	50, 91, 113, 179
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	49
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme1390I	CCNGG	4 cut(s)	50, 91, 113, 179
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	2 cut(s)	110, 259
BmrFI	CCNGG	4 cut(s)	50, 91, 113, 179
BpmI	CTGGAG	2 cut(s)	134, 215
BpuEI	CTTGAG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	30, 39, 177, 178
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
BseBI	CCWGG	4 cut(s)	50, 91, 113, 179
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	4 cut(s)	30, 39, 177, 178
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	185
BseX3I	CGGCCG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	124
Bsh1236I	CGCG	2 cut(s)	27, 245
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	3 cut(s)	53, 194, 251
BshVI	ATCGAT	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	54, 106
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	178
BsnI	GGCC	3 cut(s)	53, 194, 251
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	61
Bsp68I	TCGCGA	1 cut(s)	245
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	3 cut(s)	53, 194, 251
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	2 cut(s)	27, 245
BspLI	GGNNCC	2 cut(s)	110, 259
BspPI	GGATC	1 cut(s)	69
BspQI	GCTCTTC	1 cut(s)	89
BssECI	CCNNGG	4 cut(s)	30, 39, 177, 178
BssMI	GATC	1 cut(s)	61
BssT1I	CCWWGG	2 cut(s)	30, 39
Bst2UI	CCWGG	4 cut(s)	50, 91, 113, 179
Bst6I	CTCTTC	3 cut(s)	89, 192, 221
BstFNI	CGCG	2 cut(s)	27, 245
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	3 cut(s)	29, 48, 127
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	61
BstMCI	CGRYCG	1 cut(s)	252
BstNI	CCWGG	4 cut(s)	50, 91, 113, 179
BstSCI	CCNGG	4 cut(s)	48, 89, 111, 177
BstSLI	GKGCMC	1 cut(s)	185
BstUI	CGCG	2 cut(s)	27, 245
BstV1I	GCAGC	1 cut(s)	125
BstZI	CGGCCG	1 cut(s)	249
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	53, 194, 251
BsuTUI	ATCGAT	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
BtuMI	TCGCGA	1 cut(s)	245
CfoI	GCGC	3 cut(s)	29, 48, 127
Cfr13I	GGNCC	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	132
CviJI	RGCY	9 cut(s)	53, 76, 86, 99, 111, 194, 235, 251, 258
CviKI_1	RGCY	9 cut(s)	53, 76, 86, 99, 111, 194, 235, 251, 258
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EaeI	YGGCCR	2 cut(s)	51, 249
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	3 cut(s)	89, 192, 221
EarI	CTCTTC	3 cut(s)	89, 192, 221
EclXI	CGGCCG	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	30, 39
Eco52I	CGGCCG	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRII	CCWGG	4 cut(s)	48, 89, 111, 177
EcoT14I	CCWWGG	2 cut(s)	30, 39
ErhI	CCWWGG	2 cut(s)	30, 39
Fnu4HI	GCNGC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	139
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	3 cut(s)	28, 47, 126
GluI	GCNGC	1 cut(s)	139
GsuI	CTGGAG	2 cut(s)	134, 215
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	3 cut(s)	53, 194, 251
HapII	CCGG	2 cut(s)	54, 106
HhaI	GCGC	3 cut(s)	29, 48, 127
Hin6I	GCGC	3 cut(s)	27, 46, 125
HinP1I	GCGC	3 cut(s)	27, 46, 125
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	2 cut(s)	145, 171
HpaII	CCGG	2 cut(s)	54, 106
HphI	GGTGA	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	244
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	248, 271
HpyCH4V	TGCA	1 cut(s)	141
HspAI	GCGC	3 cut(s)	27, 46, 125
Kzo9I	GATC	1 cut(s)	61
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	4 cut(s)	43, 108, 240, 263
Lsp1109I	GCAGC	1 cut(s)	125
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	4 cut(s)	106, 140, 179, 208
MhlI	GDGCHC	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	5 cut(s)	77, 109, 206, 211, 224
MspI	CCGG	2 cut(s)	54, 106
MspR9I	CCNGG	4 cut(s)	50, 91, 113, 179
MvaI	CCWGG	4 cut(s)	50, 91, 113, 179
MvnI	CGCG	2 cut(s)	27, 245
NdeII	GATC	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	110, 259
NmuCI	GTSAC	1 cut(s)	118
NruI	TCGCGA	1 cut(s)	245
PasI	CCCWGGG	1 cut(s)	178
PciSI	GCTCTTC	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	140
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Psp6I	CCWGG	4 cut(s)	48, 89, 111, 177
PspGI	CCWGG	4 cut(s)	48, 89, 111, 177
PspN4I	GGNNCC	2 cut(s)	110, 259
PspPI	GGNCC	1 cut(s)	193
RruI	TCGCGA	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	89
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	4 cut(s)	50, 91, 113, 179
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	5 cut(s)	78, 88, 120, 203, 237
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	4 cut(s)	48, 89, 111, 177
StyI	CCWWGG	2 cut(s)	30, 39
TaqI	TCGA	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	145
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	138
Tsp45I	GTSAC	1 cut(s)	118
TspRI	CASTG	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.