Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002725.1

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

70862 .. 73304

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002725.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggcagaaacttgggccgaggtggatgggaggtgcagccgagaggttgcaggaggcttaggccgagatgtggcaagttggttggctcggggcagtatgcttgcggcaaggctgtctggctgcaggggcagtgcgcaaggcagcaagggctgctgtgaggctgcaggggcagcgatacagagctgcaagagcacgggggcacaggctgcagcgaaggagagcagggacgcgggtacaccagtctcatttactccccagccatctgcttctgctaatctacctggatatggaacttcggctactgttgcaaacttgcaatggatagaagttctggcttatcctctaggacttacatggaggggaggttttgatgatagccagctctcacaggagatggcaaatcatgtagaaggtccagcatcgttcaatgatgctctgagcgaaggactgagttcatcttcagactggtcagctagggtcgctgcatttaattatcttcggtctttgttgcagcaaggccaaagaggaattcaaggagtgattcagaatttcaagaaagtaacgaagttgtttttccaacactcggataatccgcaccacaaaattgcacaagcagccctttcaacacttgcagatattatcccatcttgccgtaagccccttgaaagttccatggaaaggatcccacctcatgttttctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

234

Amino Acids

24.73

Weight (kDa)

7.64

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	135
AccII	CGCG	1 cut(s)	230
AciI	CCGC	3 cut(s)	104, 230, 593
AclWI	GGATC	2 cut(s)	676, 689
AcsI	RAATTY	2 cut(s)	528, 547
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	4 cut(s)	70, 287, 583, 678
AgsI	TTSAA	5 cut(s)	427, 533, 553, 624, 665
AjnI	CCWGG	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	3 cut(s)	183, 382, 473
AluI	AGCT	3 cut(s)	183, 382, 473
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	2 cut(s)	676, 689
Ama87I	CYCGRG	1 cut(s)	87
AoxI	GGCC	3 cut(s)	15, 61, 517
ApoI	RAATTY	2 cut(s)	528, 547
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	15, 413
AvaI	CYCGRG	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	202
BaeI	ACNNNNGTAYC	2 cut(s)	225, 258
BamHI	GGATCC	1 cut(s)	681
Bbv12I	GWGCWC	1 cut(s)	194
BccI	CCATC	4 cut(s)	20, 268, 388, 652
BceAI	ACGGC	1 cut(s)	636
BciT130I	CCWGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	2 cut(s)	344, 474
BfmI	CTRYAG	3 cut(s)	121, 162, 207
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	413
BmeT110I	CYCGRG	1 cut(s)	87
BmgT120I	GGNCC	2 cut(s)	15, 413
BmiI	GGNNCC	1 cut(s)	683
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	2 cut(s)	421, 428
Bpu10I	CCTNAGC	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	18, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 287, 583, 678
Bse1I	ACTGG	2 cut(s)	239, 470
Bse3DI	GCAATG	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	18, 672
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	4 cut(s)	70, 287, 583, 678
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	2 cut(s)	428, 440
BseNI	ACTGG	2 cut(s)	239, 470
BseSI	GKGCMC	1 cut(s)	202
BseYI	CCCAGC	1 cut(s)	255
BsgI	GTGCAG	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	3 cut(s)	17, 63, 519
BsiHKAI	GWGCWC	1 cut(s)	194
BsiHKCI	CYCGRG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	4 cut(s)	70, 287, 583, 678
BsmAI	GTCTC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	3 cut(s)	17, 63, 519
BsoBI	CYCGRG	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	194, 202
Bsp143I	GATC	1 cut(s)	681
Bsp19I	CCATGG	1 cut(s)	672
BspACI	CCGC	3 cut(s)	104, 230, 593
BspANI	GGCC	3 cut(s)	17, 63, 519
BspCNI	CTCAG	2 cut(s)	429, 441
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	683
BspMAI	CTGCAG	3 cut(s)	125, 166, 211
BspPI	GGATC	2 cut(s)	676, 689
BsrDI	GCAATG	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	239, 470
BssECI	CCNNGG	2 cut(s)	18, 672
BssMI	GATC	1 cut(s)	681
BssT1I	CCWWGG	1 cut(s)	672
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	304
BstAPI	GCANNNNNTGC	2 cut(s)	150, 206
BstC8I	GCNNGC	2 cut(s)	102, 380
BstDEI	CTNAG	3 cut(s)	58, 437, 449
BstDSI	CCRYGG	1 cut(s)	672
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	1 cut(s)	684
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	681
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	3 cut(s)	121, 162, 207
BstSLI	GKGCMC	1 cut(s)	202
BstUI	CGCG	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	681
BstYI	RGATCY	1 cut(s)	681
BsuRI	GGCC	3 cut(s)	17, 63, 519
BtgI	CCRYGG	1 cut(s)	672
BtsCI	GGATG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	102, 380
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	15, 413
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	4 cut(s)	354, 404, 673, 692
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	3 cut(s)	58, 437, 449
DpnI	GATC	1 cut(s)	683
DpnII	GATC	1 cut(s)	681
Eco130I	CCWWGG	1 cut(s)	672
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	528
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	672
ErhI	CCWWGG	1 cut(s)	672
FaeI	CATG	4 cut(s)	357, 407, 676, 695
FaiI	YATR	7 cut(s)	98, 288, 355, 405, 674, 693, 703
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	4 cut(s)	353, 403, 672, 691
FauI	CCCGC	1 cut(s)	223
FokI	GGATG	1 cut(s)	38
FspBI	CTAG	2 cut(s)	344, 474
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	1 cut(s)	135
GsaI	CCCAGC	1 cut(s)	259
HaeIII	GGCC	3 cut(s)	17, 63, 519
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	4 cut(s)	357, 407, 676, 695
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	541
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	4 cut(s)	438, 463, 546, 586
Hpy188III	TCNNGA	1 cut(s)	553
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	3 cut(s)	208, 404, 437
HpyCH4III	ACNGT	1 cut(s)	304
HpyF3I	CTNAG	3 cut(s)	58, 437, 449
Hsp92II	CATG	4 cut(s)	357, 407, 676, 695
HspAI	GCGC	1 cut(s)	134
Kzo9I	GATC	1 cut(s)	681
LweI	GCATC	2 cut(s)	421, 428
MaeI	CTAG	2 cut(s)	344, 474
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	1 cut(s)	683
MboI	GATC	1 cut(s)	681
MboII	GAAGA	2 cut(s)	450, 488
MflI	RGATCY	1 cut(s)	681
MhlI	GDGCHC	2 cut(s)	194, 202
MluCI	AATT	4 cut(s)	490, 528, 547, 603
MmeI	TCCRAC	1 cut(s)	601
MseI	TTAA	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	672
NdeII	GATC	1 cut(s)	681
NlaIII	CATG	4 cut(s)	357, 407, 676, 695
NlaIV	GGNNCC	1 cut(s)	683
NmeAIII	GCCGAG	3 cut(s)	43, 65, 89
NsbI	TGCGCA	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	683
PspPI	GGNCC	2 cut(s)	15, 413
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
PstI	CTGCAG	3 cut(s)	125, 166, 211
PsuI	RGATCY	1 cut(s)	681
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	489
Sau3AI	GATC	1 cut(s)	681
Sau96I	GGNCC	2 cut(s)	15, 413
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	2 cut(s)	194, 202
SfaNI	GCATC	2 cut(s)	421, 428
SfcI	CTRYAG	3 cut(s)	121, 162, 207
SinI	GGWCC	1 cut(s)	413
Sse9I	AATT	4 cut(s)	490, 528, 547, 603
SsiI	CCGC	3 cut(s)	104, 230, 593
SspMI	CTAG	2 cut(s)	344, 474
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	1 cut(s)	304
TaqII	GACCGA	1 cut(s)	489
TasI	AATT	4 cut(s)	490, 528, 547, 603
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	444
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	528, 547
XspI	CTAG	2 cut(s)	344, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.