Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000723.1

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Forward (+)

21959 .. 22360

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000723.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgatccgcaccacaaagttgcacaagcagcccctttcaacactagcagatattattccatcttgccggaagccttttgaaacttacatggagaggatcctacctcatgttttctcacagttgattgacccaaatgagttagttaggcgatcttactcaacaactttggtcattgttggcaagactagaaagattgtagattccctgttaacagcggtcaccaaagttttaatcccaaaatttctgatttttgggcggcaaagctcgggcaattcctcttttgctgctgtctccgacatctcttgggacggcgtcgtcacccatcttcaccttctccgccacttcctctgggagtggcggagagacctccaatctcctccatcgaaaacgtattcggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

133

Amino Acids

15.29

Weight (kDa)

9.92

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
AciI	CCGC	5 cut(s)	7, 215, 256, 337, 358
AclWI	GGATC	2 cut(s)	91, 104
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	312
AgsI	TTSAA	2 cut(s)	39, 80
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	295, 357
AlwI	GGATC	2 cut(s)	91, 104
Ama87I	CYCGRG	1 cut(s)	265
ApeKI	GCWGC	2 cut(s)	28, 284
ApoI	RAATTY	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	211, 310, 320
AvaI	CYCGRG	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	40, 271
BccI	CCATC	3 cut(s)	67, 330, 388
BceAI	ACGGC	1 cut(s)	325
BcoDI	GTCTC	2 cut(s)	295, 357
BfaI	CTAG	2 cut(s)	44, 186
BisI	GCNGC	3 cut(s)	29, 257, 285
BlsI	GCNGC	3 cut(s)	30, 258, 286
BmeT110I	CYCGRG	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	40, 271
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	320
BsmAI	GTCTC	2 cut(s)	295, 357
BsmFI	GGGAC	1 cut(s)	320
Bso31I	GGTCTC	1 cut(s)	357
BsoBI	CYCGRG	1 cut(s)	265
Bsp143I	GATC	3 cut(s)	3, 96, 149
BspACI	CCGC	5 cut(s)	7, 215, 256, 337, 358
BspLI	GGNNCC	1 cut(s)	98
BspPI	GGATC	2 cut(s)	91, 104
BspTNI	GGTCTC	1 cut(s)	357
BssMI	GATC	3 cut(s)	3, 96, 149
BssNI	GRCGYC	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	312
BstEII	GGTNACC	1 cut(s)	217
BstKTI	GATC	3 cut(s)	6, 99, 152
BstMAI	GTCTC	2 cut(s)	295, 357
BstMBI	GATC	3 cut(s)	3, 96, 149
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstPI	GGTNACC	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	40, 271
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
CseI	GACGC	1 cut(s)	301
CviAII	CATG	2 cut(s)	88, 107
CviJI	RGCY	3 cut(s)	31, 73, 264
CviKI_1	RGCY	3 cut(s)	31, 73, 264
DpnI	GATC	3 cut(s)	5, 98, 151
DpnII	GATC	3 cut(s)	3, 96, 149
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EciI	GGCGGA	2 cut(s)	326, 373
Eco31I	GGTCTC	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	265
Eco91I	GGTNACC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	217
FaeI	CATG	2 cut(s)	91, 110
FaiI	YATR	2 cut(s)	89, 108
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	2 cut(s)	87, 106
Fnu4HI	GCNGC	3 cut(s)	29, 257, 285
Fsp4HI	GCNGC	3 cut(s)	29, 257, 285
FspBI	CTAG	2 cut(s)	44, 186
GluI	GCNGC	3 cut(s)	29, 257, 285
HapII	CCGG	1 cut(s)	67
HgaI	GACGC	1 cut(s)	301
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	2 cut(s)	91, 110
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	1 cut(s)	200
HpaI	GTTAAC	1 cut(s)	210
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	3 cut(s)	211, 310, 320
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	3 cut(s)	246, 295, 397
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	389
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	91, 110
KspAI	GTTAAC	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	3, 96, 149
LpnPI	CCDG	3 cut(s)	80, 218, 334
Lsp1109I	GCAGC	2 cut(s)	40, 271
MaeI	CTAG	2 cut(s)	44, 186
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	2 cut(s)	217, 316
MalI	GATC	3 cut(s)	5, 98, 151
MboI	GATC	3 cut(s)	3, 96, 149
MboII	GAAGA	1 cut(s)	317
MflI	RGATCY	1 cut(s)	96
MluCI	AATT	2 cut(s)	239, 271
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	87, 114, 286, 356, 377, 387
MseI	TTAA	2 cut(s)	209, 230
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	28
NdeII	GATC	3 cut(s)	3, 96, 149
NlaIII	CATG	2 cut(s)	91, 110
NlaIV	GGNNCC	1 cut(s)	98
NmuCI	GTSAC	2 cut(s)	217, 316
PfeI	GAWTC	1 cut(s)	200
PflFI	GACNNNGTC	1 cut(s)	311
PkrI	GCNGC	3 cut(s)	30, 258, 286
PspEI	GGTNACC	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	96
PsyI	GACNNNGTC	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	209, 230
SatI	GCNGC	3 cut(s)	29, 257, 285
Sau3AI	GATC	3 cut(s)	3, 96, 149
SetI	ASST	5 cut(s)	106, 266, 333, 369, 392
Sse9I	AATT	2 cut(s)	239, 271
SsiI	CCGC	5 cut(s)	7, 215, 256, 337, 358
SspMI	CTAG	2 cut(s)	44, 186
TaaI	ACNGT	1 cut(s)	120
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	1 cut(s)	383
TasI	AATT	2 cut(s)	239, 271
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	209, 230
Tru9I	TTAA	2 cut(s)	209, 230
TseFI	GTSAC	2 cut(s)	217, 316
TseI	GCWGC	2 cut(s)	28, 284
Tsp45I	GTSAC	2 cut(s)	217, 316
Tth111I	GACNNNGTC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	239
XspI	CTAG	2 cut(s)	44, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.