Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

51331780 .. 51341874

Gene Structure 10095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG288200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4110 bp

ATGGAGGAAGCGCTTGAACTCGCACGCGCCAAGGACACCAAGGAGCGCATGGCAGGAGTGGAGCGACTCCACCAGCTTCTCGAAGCTTCCAGGAAGAGCCTCACTTCGGCCGAGGTCACTGCGCTCGTCGATTGCTGCATGGATCTTCTCAAGGACAACAACTTCCGAGTCTCTCAGGGCTCTCTTCAGGCCCTCGCCTCCGCCGCCGTCCTCTCCGGCGACCATCTCAAGCTTCATTTCAATGCGCTTGTCCCCGCCGTCGTCGAGCGCCTCGGCGATGCCAAACAGCCCGTTCGCGACGCTGCCCGGAGGCTCCTGCTTACTCTTATGGAGGTGTCTTCTCCAACGCTTATTGTTGAAAGAGCAGGTTCTTATGCCTGGGCACACAAAAGTTGGAGAGTTAGAGAGGAGTTTGCACGAACTGTCACCTCAGCAATTGGACTTTTTGCATCAACCGAACTTCCTCTTCAGCGTGCTATACTTCCTCCGATTCTGCAGATGTTAAGTGATTCAAATCCCGGTGTAAGGGACGCAGCTATATTGTGCATTGAGGAGATGTATACGCAGGCAGGGACTCAGTTCCGTGATGAACTTCAGCGGCACCATCTTCCCATGTCCATGGTGAAGGATATTAATGCAAGACTAGAGAGGATTGAACCTAAGAATCGCTCATCAGATGGACTTGCTGCTGTAGAAACAAAGCCCTTGAGCCATAACCCAAAGAGAAATAGTCCAAAGGCTAAGAGTTCCTCAAGGGAGGTATCTCAATTTGGAGCGGAAACTGATCCAACTGTAAAATCTGTAGACCCTATAAAAGTTTATTCTGAAAAGGAACTAATAAGAGAAGTGGAGAAAATAGCTTCTACCCTTGTACCAGAGAAAGACTGGTCAATTCGGATTGCTGCAATGCAGAGAATTGAAGGGCTTGTATATGGAGGTGCTGCTGATTATCAATCATTTCGGGGGCTTTTGAAGCAACTTGTGAATCCTCTGAACACACAGTTATCTGATCGAAGGTCTAGCATAGTGAAGCAGGCTTGCCATCTGTTATGCTTTTTGTCGAAGGAGCTATTGGAAGATTTTGAGGCATATGCAGAGATTTTCATTCCAGTCCTTTTCAAGCTGGTTGTGATCACTGTACTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGTTGCGTAACTGTAAAGTTGCTCGGGTGCTCCCTCGTATTGCGGATTGTGCAAAGAATGACCGTAATGCAATACTTCGAGCAAGGTGCTGTGACTATGCACTGTTGATACTGGAGTATTGGGCCGATGAACCTGAAATACAGAGATCGGCAGATTTGTATGAAGATCTAATAAGATGTTGTGTTGCAGATGCAATGAGCGAGGTCCGTTCAACTGCAAGAATGTGCTATAGAATGTTTTCAAAAACCTGGCCGGAGCGTTCCCGACGACTATTTTCACTATTTGATCCCGTTATTCAAAGGTTAATCAATGAAGAGGATGGGGGGATACATAGGCGACATGCTTCTCCATCTGTTCGTGATAGGGGTACACCGGTCTCATTTACTCCCCAGCCATCTGCTTCTGCTAATCTACCTGGATATGGAACTTCGGCTATTGTTGCAATGGATAGAAGTTCAAGTTTATCCTCTGGGACTTCTTTCTCTTCAGGACTTCATCTGTCACAAGCGAAGTCACATGGTAAAGGTACTGAGCGTAGTCTGGAAAGTGTGTTGCATGCAAGCAAACAGAAGGTCAGTGCAATTGAAAGCATGCTTAGAGGTTTGGAGTTGTCTGACAGACATAATTCTTCAACTCTCCGGTCATCTAGCCTGGATCTAGGAGTTGACCCTCCATCATCTCGTGATCCACCATTCCCTGCTGCTGTCCCAGCTTCTAATCATCTTTCAAACTCTCTAATGACAGATTCAACCACCTCAAGTAACAAAGGTAGTAACCGCAATGGTGGCCTGGTTTTGTCTGATATCATTACGCAAATTCAAGCTTCCAAAGATTCCGCTAAATCATCATATCGCAGTAATTTATCAGCTGAAACACTGCCAACTGTTTCATCCTACAACATAAAGAGGGCTTCTGAGAGAATCCACGAAAGGGGTTTCATTGAAGATAATACTGACAGTAGGGAGGCTAGGCGAACTATGAATCATCAAGCTGACAGGCATTATTTGGACACATCTCACAGGGATGGAAACTTTAGGGATTCACATAATAACCATATCCCCAATTTTCAAAGGCCCCTCTTAAGAAAGAATGCTACAGGAAGGATATCTGCAGGCAGGAGGAGAAGTTTTGATGATAGCCAACTCTCACAGGAGATGGCAAATTATGTAGAAGGTCCAGCATCGCTAAATGATGCTTTGAGTGAAGGACTAAGTTCATCTTCAGACTGGTCAGCTAGGGTTGCTGCATTTAATTATCTTCGGTCTTTGTTGCAGCAAGGCCAAAGAGGAATTCAAGAAGTGATTCAGAATTTCGAGAAAGTAATGAAGTTGTTTTTCCAACACTTGGATGATCCGCACCACAAAGTTGCACAAGCAGCCCTTTCAACACTTGCAGACATTATTCCATCATGCCGTAAGCCCTTTGAAAGTTACATGGAAAGGATCCTACCTCATGTTTTCTCACGGTTAATTGACCCAAAGGAGTTAGTTAGGCAACCTTGCTCAACAACTTTGGTTATCGTTGGCAAGACTTACAGTGTAGATTCCCTGTTACCTGCTTTGCTTCGTTCACTAGATGAACAGAGGTCACCAAAGGCTAAATTAGCTGTTATTGAGTTTTCTATCGGTTCATTTAACAAGCATTCAGTGAATACTGAAGGTTCTGGTAATAGTGGCATCCTAAAATTATGGCTTTCGAAGTTGACACCATTGGTCCATGATAAAAACACTAAACTAAAGGAGGCAGCTATTACATGCATAATCTCTGTATACTCCCACTTTGATCCAACAGCTGTCTTGAATTTTATTCTTAGCTTGTCAGTTGAAGAACAAAATTCATTGAGAAGAGCCTTGAAACAAAGTACTCCTCGCATTGAAGTGGACCTTATGAACTTTTTGCAAAACAAGAAAGAGCGACAGCGCAAGTCTTCTTATGATCCGTCTGATGCAGTTGGAACATCTTCCGAAGAAGGATATGTTAGTGCCTCAAAGAAGAGTCATTTCTTTGGGAGGTATTCTGCTGGTTCAGTTGATAGTGATGGTGGCAGGAAGTGGAGTTCAACCCAAGAAACAGCCTTGGTGACTGGCTCGGTTGGCCAAGCAGCTTCTGATCAGACTGGGGAAAACTTGTATCAGAATTTTGAGACTGGTTCTAACATTGATGTTCTCAATGCAAAATCCAAGGATCCAACTTACATGGTCAGTGCCATGAATCAGAGCTCTGGTTCCTGGACTAGCCCTCTGGACAATGGCGGCGAAGGTAGGGTAAATTTAGAAAGTTTGCATACTCATTCCCTGGATGTTAATGGGGTTTTGAACTCGGACCATATTGGGGCTGCTGAGAGCATTGGGCATAGTGAAGCTTCCACCGACTTGGACCAGAATCACCACCAACTTAAAGCTTTAAAGGTTAATTCCATTCCAGACTCAGGTCCCAGCATTCCTCAGATACTCCACCTGATTAGCACTGGAACTGAGGAAAGTCCTGCAGAAAGTAAGCGTGGTGCACTTCAACAGCTAATCGAAGCTTCTAAAACTAATGACCACTCTATTTGGACCAAGTACTTCAATCAAATTTTGACAGTTGTACTTGAGGTGTTGGATGATTTTGACTCCTCCATCCGGGAGCTCTCTCTTTCATTGATTATTGAAATGCTTAAGCACCAGAAAGCTGCAATGGAAGATTCTATTGAGATCGTGATTGAGAAGCTGCTGCATGTTACAAAGGACTTAGTTCCCCAGGTTTCAAATGAATCAGAGCACTGCTTGAGTATTGTTCTGTCGCAGTATGATCCATTCAGATGTTTAAGTGTCATTGTCCCTTTATTGGTAACTGAAGATGAGAAAACTCTTGTTACTTGCATAAACTGTTTGACAAAGGTATTACACTTCTATGTATTCAATCTATATGAAATTTTTGGATGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

1369

Amino Acids

151.91

Weight (kDa)

6.68

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CEP104-like_TOG	PF21040	10 - 180	9.9e-10	Centrosomal protein CEP104-like, TOG domain
XMAP215_CLASP_TOG	PF21041	11 - 213	3.5e-09	XMAP215/Dis1/CLASP, TOG domain
HEAT_GCN1_C	PF25786	18 - 116	2.9e-06	GCN1-like, C-terminal HEAT repeats
CLASP_N	PF12348	280 - 496	1.1e-48	CLASP N terminal
CLASP_N	PF12348	796 - 987	3.8e-09	CLASP N terminal
CEP104-like_TOG	PF21040	800 - 943	1.5e-08	Centrosomal protein CEP104-like, TOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	356, 2743
AccB1I	GGYRCC	1 cut(s)	600
AccB7I	CCANNNNNTGG	1 cut(s)	2524
AccBSI	CCGCTC	1 cut(s)	776
AccI	GTMKAC	3 cut(s)	560, 804, 2949
AccII	CGCG	2 cut(s)	27, 297
AcoI	YGGCCR	3 cut(s)	108, 1430, 3274
AcsI	RAATTY	9 cut(s)	1995, 2469, 2488, 2980, 3013, 3316, 3448, 3753, 4092
AcuI	CTGAAG	7 cut(s)	170, 452, 578, 1650, 2385, 2856, 4035
AfaI	GTAC	7 cut(s)	873, 1140, 1549, 1708, 3043, 3743, 3768
AfeI	AGCGCT	1 cut(s)	12
AfiI	CCNNNNNNNGG	9 cut(s)	106, 525, 1601, 2110, 2524, 3511, 3608, 3801, 4006
AflII	CTTAAG	2 cut(s)	2260, 3836
AgeI	ACCGGT	1 cut(s)	1552
AjnI	CCWGG	9 cut(s)	89, 377, 1427, 1594, 1830, 1968, 3407, 3474, 3918
AjuI	GAANNNNNNNTTGG	4 cut(s)	1055, 1087, 2454, 2486
AloI	GAACNNNNNNTCC	2 cut(s)	3220, 3252
Alw21I	GWGCWC	5 cut(s)	1212, 3401, 3688, 3810, 3942
Alw26I	GTCTC	3 cut(s)	175, 1561, 3317
Alw44I	GTGCAC	1 cut(s)	3684
AlwNI	CAGNNNCTG	2 cut(s)	1157, 3287
Ama87I	CYCGRG	1 cut(s)	1203
Aor51HI	AGCGCT	1 cut(s)	12
AoxI	GGCC	8 cut(s)	108, 189, 1302, 1430, 1966, 2252, 2458, 3274
ApaLI	GTGCAC	1 cut(s)	3684
ApoI	RAATTY	9 cut(s)	1995, 2469, 2488, 2980, 3013, 3316, 3448, 3753, 4092
ArsI	GACNNNNNNTTYG	2 cut(s)	1737, 1769
AseI	ATTAAT	1 cut(s)	633
AsiGI	ACCGGT	1 cut(s)	1552
Asp700I	GAANNNNTTC	3 cut(s)	1417, 2481, 3139
AspLEI	GCGC	7 cut(s)	13, 29, 48, 124, 247, 270, 3102
AsuC2I	CCSGG	3 cut(s)	307, 519, 3803
AsuHPI	GGTGA	5 cut(s)	418, 634, 2760, 3271, 3557
AsuII	TTCGAA	1 cut(s)	2876
AvaI	CYCGRG	1 cut(s)	1203
AvaII	GGWCC	8 cut(s)	1384, 2354, 2893, 3061, 3502, 3556, 3611, 3735
BaeGI	GKGCMC	2 cut(s)	385, 3688
BaeI	ACNNNNGTAYC	6 cut(s)	855, 888, 1280, 1313, 1539, 1572
BalI	TGGCCA	1 cut(s)	3276
BamHI	GGATCC	2 cut(s)	2622, 3364
BanI	GGYRCC	1 cut(s)	600
BanII	GRGCYC	3 cut(s)	182, 3401, 3810
BauI	CACGAG	1 cut(s)	1860
BbsI	GAAGAC	2 cut(s)	330, 3099
Bbv12I	GWGCWC	5 cut(s)	1212, 3401, 3688, 3810, 3942
BbvCI	CCTCAGC	1 cut(s)	430
BceAI	ACGGC	3 cut(s)	191, 242, 2577
BcgI	CGANNNNNNTGC	4 cut(s)	101, 135, 1248, 1282
BciT130I	CCWGG	9 cut(s)	91, 379, 1429, 1596, 1832, 1970, 3409, 3476, 3920
BciVI	GTATCC	1 cut(s)	1500
BclI	TGATCA	2 cut(s)	1131, 3289
BcnI	CCSGG	3 cut(s)	307, 519, 3803
BcoDI	GTCTC	3 cut(s)	175, 1561, 3317
BfaI	CTAG	8 cut(s)	644, 1020, 1827, 1838, 2148, 2415, 2753, 3414
BfmI	CTRYAG	8 cut(s)	494, 690, 801, 1158, 1408, 2274, 2289, 3666
BfoI	RGCGCY	2 cut(s)	14, 271
BfrI	CTTAAG	2 cut(s)	2260, 3836
BfuAI	ACCTGC	2 cut(s)	356, 2743
BfuI	GTATCC	1 cut(s)	1500
BglII	AGATCT	1 cut(s)	1345
BmcAI	AGTACT	2 cut(s)	3043, 3743
Bme18I	GGWCC	8 cut(s)	1384, 2354, 2893, 3061, 3502, 3556, 3611, 3735
BmeT110I	CYCGRG	1 cut(s)	1203
BmiI	GGNNCC	7 cut(s)	314, 602, 2255, 2624, 3366, 3406, 3613
BmrI	ACTGGG	1 cut(s)	3306
BmsI	GCATC	7 cut(s)	268, 458, 1360, 2362, 2369, 2865, 3115
BmuI	ACTGGG	1 cut(s)	3306
BoxI	GACNNNNGTC	1 cut(s)	3609
BpiI	GAAGAC	2 cut(s)	330, 3099
BpmI	CTGGAG	1 cut(s)	1313
Bpu10I	CCTNAGC	1 cut(s)	430
Bpu14I	TTCGAA	1 cut(s)	2876
BpuEI	CTTGAG	7 cut(s)	134, 212, 727, 736, 1921, 3791, 3967
BpuMI	CCSGG	3 cut(s)	307, 519, 3803
BsaBI	GATNNNNATC	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	1561
BsaWI	WCCGGW	2 cut(s)	1552, 1818
BsaXI	ACNNNNNCTCC	2 cut(s)	2290, 2320
Bsc4I	CCNNNNNNNGG	9 cut(s)	106, 525, 1601, 2110, 2524, 3511, 3608, 3801, 4006
Bse118I	RCCGGY	1 cut(s)	1552
Bse1I	ACTGG	8 cut(s)	890, 1109, 1296, 2411, 3268, 3301, 3331, 3652
Bse3DI	GCAATG	5 cut(s)	912, 1380, 1629, 1966, 3861
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	9 cut(s)	91, 379, 1429, 1596, 1832, 1970, 3409, 3476, 3920
BseGI	GGATG	9 cut(s)	1504, 2069, 2209, 2533, 2856, 3484, 3787, 3798, 4106
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	9 cut(s)	106, 525, 1601, 2110, 2524, 3511, 3608, 3801, 4006
BseMI	GCAATG	5 cut(s)	912, 1380, 1629, 1966, 3861
BseMII	CTCAG	9 cut(s)	188, 444, 590, 1701, 2085, 3510, 3621, 3638, 3645
BseNI	ACTGG	8 cut(s)	890, 1109, 1296, 2411, 3268, 3301, 3331, 3652
BseRI	GAGGAG	5 cut(s)	422, 566, 2314, 3036, 3784
BseSI	GKGCMC	2 cut(s)	385, 3688
BseX3I	CGGCCG	1 cut(s)	108
BseYI	CCCAGC	3 cut(s)	1569, 1888, 3614
Bsh1236I	CGCG	2 cut(s)	27, 297
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	8 cut(s)	110, 191, 1304, 1432, 1968, 2254, 2460, 3276
BshNI	GGYRCC	1 cut(s)	600
BshTI	ACCGGT	1 cut(s)	1552
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	5 cut(s)	1212, 3401, 3688, 3810, 3942
BsiHKCI	CYCGRG	1 cut(s)	1203
BsiSI	CCGG	7 cut(s)	216, 307, 519, 1433, 1553, 1819, 3802
BslFI	GGGAC	7 cut(s)	236, 542, 586, 1666, 1871, 3597, 3983
BslI	CCNNNNNNNGG	9 cut(s)	106, 525, 1601, 2110, 2524, 3511, 3608, 3801, 4006
BsmAI	GTCTC	3 cut(s)	175, 1561, 3317
BsmFI	GGGAC	7 cut(s)	236, 542, 586, 1666, 1871, 3597, 3983
BsmI	GAATGC	3 cut(s)	2275, 2821, 3618
BsnI	GGCC	8 cut(s)	110, 191, 1304, 1432, 1968, 2254, 2460, 3276
Bso31I	GGTCTC	1 cut(s)	1561
BsoBI	CYCGRG	1 cut(s)	1203
Bsp119I	TTCGAA	1 cut(s)	2876
Bsp1286I	GDGCHC	7 cut(s)	182, 385, 1212, 3401, 3688, 3810, 3942
Bsp19I	CCATGG	1 cut(s)	618
Bsp68I	TCGCGA	1 cut(s)	297
BspANI	GGCC	8 cut(s)	110, 191, 1304, 1432, 1968, 2254, 2460, 3276
BspCNI	CTCAG	9 cut(s)	187, 443, 589, 1702, 2086, 3511, 3620, 3637, 3646
BspFNI	CGCG	2 cut(s)	27, 297
BspLI	GGNNCC	7 cut(s)	314, 602, 2255, 2624, 3366, 3406, 3613
BspMAI	CTGCAG	4 cut(s)	498, 1162, 2293, 3670
BspMI	ACCTGC	2 cut(s)	356, 2743
BspQI	GCTCTTC	2 cut(s)	89, 3019
BspT104I	TTCGAA	1 cut(s)	2876
BspT107I	GGYRCC	1 cut(s)	600
BspTI	CTTAAG	2 cut(s)	2260, 3836
BspTNI	GGTCTC	1 cut(s)	1561
BsrBI	CCGCTC	1 cut(s)	776
BsrDI	GCAATG	5 cut(s)	912, 1380, 1629, 1966, 3861
BsrFI	RCCGGY	1 cut(s)	1552
BsrI	ACTGG	8 cut(s)	890, 1109, 1296, 2411, 3268, 3301, 3331, 3652
BssAI	RCCGGY	1 cut(s)	1552
BssNAI	GTATAC	2 cut(s)	561, 2950
BssSI	CACGAG	1 cut(s)	1860
BssT1I	CCWWGG	5 cut(s)	30, 39, 618, 3255, 3360
Bst1107I	GTATAC	2 cut(s)	561, 2950
Bst2BI	CACGAG	1 cut(s)	1860
Bst2UI	CCWGG	9 cut(s)	91, 379, 1429, 1596, 1832, 1970, 3409, 3476, 3920
Bst6I	CTCTTC	7 cut(s)	89, 189, 471, 1488, 1669, 3019, 3167
BstAFI	CTTAAG	2 cut(s)	2260, 3836
BstAPI	GCANNNNNTGC	1 cut(s)	1157
BstBI	TTCGAA	1 cut(s)	2876
BstC8I	GCNNGC	9 cut(s)	25, 474, 567, 1035, 1039, 1737, 1741, 1772, 2293
BstDSI	CCRYGG	1 cut(s)	618
BstEII	GGTNACC	1 cut(s)	2766
BstF5I	GGATG	9 cut(s)	1504, 2069, 2209, 2533, 2856, 3484, 3787, 3798, 4106
BstFNI	CGCG	2 cut(s)	27, 297
BstH2I	RGCGCY	2 cut(s)	14, 271
BstHHI	GCGC	7 cut(s)	13, 29, 48, 124, 247, 270, 3102
BstMAI	GTCTC	3 cut(s)	175, 1561, 3317
BstMCI	CGRYCG	1 cut(s)	111
BstNI	CCWGG	9 cut(s)	91, 379, 1429, 1596, 1832, 1970, 3409, 3476, 3920
BstNSI	RCATGY	5 cut(s)	1523, 1739, 1774, 2937, 3899
BstPAI	GACNNNNGTC	1 cut(s)	3609
BstPI	GGTNACC	1 cut(s)	2766
BstSFI	CTRYAG	8 cut(s)	494, 690, 801, 1158, 1408, 2274, 2289, 3666
BstSLI	GKGCMC	2 cut(s)	385, 3688
BstUI	CGCG	2 cut(s)	27, 297
BstV2I	GAAGAC	2 cut(s)	330, 3099
BstX2I	RGATCY	5 cut(s)	142, 1345, 1834, 2622, 3364
BstXI	CCANNNNNNTGG	2 cut(s)	619, 3553
BstYI	RGATCY	5 cut(s)	142, 1345, 1834, 2622, 3364
BstZ17I	GTATAC	2 cut(s)	561, 2950
BstZI	CGGCCG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	1500
BsuRI	GGCC	8 cut(s)	110, 191, 1304, 1432, 1968, 2254, 2460, 3276
BtgI	CCRYGG	1 cut(s)	618
BtgZI	GCGATG	2 cut(s)	291, 2346
BtsCI	GGATG	9 cut(s)	1504, 2069, 2209, 2533, 2856, 3484, 3787, 3798, 4106
BtsI	GCAGTG	3 cut(s)	117, 2054, 3940
BtuMI	TCGCGA	1 cut(s)	297
BveI	ACCTGC	2 cut(s)	356, 2743
Cac8I	GCNNGC	9 cut(s)	25, 474, 567, 1035, 1039, 1737, 1741, 1772, 2293
CaiI	CAGNNNCTG	2 cut(s)	1157, 3287
CfoI	GCGC	7 cut(s)	13, 29, 48, 124, 247, 270, 3102
Cfr10I	RCCGGY	1 cut(s)	1552
CseI	GACGC	2 cut(s)	308, 539
Csp6I	GTAC	7 cut(s)	872, 1139, 1548, 1707, 3042, 3742, 3767
CspAI	ACCGGT	1 cut(s)	1552
CspCI	CAANNNNNGTGG	2 cut(s)	3713, 3748
CviQI	GTAC	7 cut(s)	872, 1139, 1548, 1707, 3042, 3742, 3767
DraI	TTTAAA	1 cut(s)	3585
EaeI	YGGCCR	3 cut(s)	108, 1430, 3274
EagI	CGGCCG	1 cut(s)	108
Eam1104I	CTCTTC	7 cut(s)	89, 189, 471, 1488, 1669, 3019, 3167
EarI	CTCTTC	7 cut(s)	89, 189, 471, 1488, 1669, 3019, 3167
EciI	GGCGGA	1 cut(s)	190
Ecl136II	GAGCTC	2 cut(s)	3399, 3808
EclXI	CGGCCG	1 cut(s)	108
Eco130I	CCWWGG	5 cut(s)	30, 39, 618, 3255, 3360
Eco24I	GRGCYC	3 cut(s)	182, 3401, 3810
Eco31I	GGTCTC	1 cut(s)	1561
Eco32I	GATATC	2 cut(s)	1984, 2286
Eco47I	GGWCC	8 cut(s)	1384, 2354, 2893, 3061, 3502, 3556, 3611, 3735
Eco47III	AGCGCT	1 cut(s)	12
Eco52I	CGGCCG	1 cut(s)	108
Eco53kI	GAGCTC	2 cut(s)	3399, 3808
Eco57I	CTGAAG	7 cut(s)	170, 452, 578, 1650, 2385, 2856, 4035
Eco88I	CYCGRG	1 cut(s)	1203
Eco91I	GGTNACC	1 cut(s)	2766
EcoICRI	GAGCTC	2 cut(s)	3399, 3808
EcoO109I	RGGNCCY	3 cut(s)	190, 2253, 3611
EcoO65I	GGTNACC	1 cut(s)	2766
EcoRI	GAATTC	1 cut(s)	2469
EcoRII	CCWGG	9 cut(s)	89, 377, 1427, 1594, 1830, 1968, 3407, 3474, 3918
EcoRV	GATATC	2 cut(s)	1984, 2286
EcoT14I	CCWWGG	5 cut(s)	30, 39, 618, 3255, 3360
EcoT22I	ATGCAT	1 cut(s)	2939
EcoT38I	GRGCYC	3 cut(s)	182, 3401, 3810
ErhI	CCWWGG	5 cut(s)	30, 39, 618, 3255, 3360
FalI	AAGNNNNNCTT	6 cut(s)	2383, 2415, 2544, 2576, 3048, 3080
FaqI	GGGAC	7 cut(s)	236, 542, 586, 1666, 1871, 3597, 3983
FauI	CCCGC	1 cut(s)	262
FauNDI	CATATG	1 cut(s)	1090
FbaI	TGATCA	2 cut(s)	1131, 3289
FblI	GTMKAC	3 cut(s)	560, 804, 2949
FokI	GGATG	8 cut(s)	1511, 2056, 2216, 2540, 2843, 3491, 3785, 3794
FriOI	GRGCYC	3 cut(s)	182, 3401, 3810
FspBI	CTAG	8 cut(s)	644, 1020, 1827, 1838, 2148, 2415, 2753, 3414
GlaI	GCGC	7 cut(s)	12, 28, 47, 123, 246, 269, 3101
GsaI	CCCAGC	3 cut(s)	1573, 1892, 3618
GsuI	CTGGAG	1 cut(s)	1313
HaeII	RGCGCY	2 cut(s)	14, 271
HaeIII	GGCC	8 cut(s)	110, 191, 1304, 1432, 1968, 2254, 2460, 3276
HapII	CCGG	7 cut(s)	216, 307, 519, 1433, 1553, 1819, 3802
HgaI	GACGC	2 cut(s)	308, 539
HhaI	GCGC	7 cut(s)	13, 29, 48, 124, 247, 270, 3102
Hin6I	GCGC	7 cut(s)	11, 27, 46, 122, 245, 268, 3100
HinP1I	GCGC	7 cut(s)	11, 27, 46, 122, 245, 268, 3100
HincII	GTYRAC	2 cut(s)	1846, 2883
HindII	GTYRAC	2 cut(s)	1846, 2883
HindIII	AAGCTT	6 cut(s)	84, 230, 2001, 3540, 3579, 3705
HpaII	CCGG	7 cut(s)	216, 307, 519, 1433, 1553, 1819, 3802
HphI	GGTGA	5 cut(s)	418, 634, 2760, 3271, 3557
Hpy166II	GTNNAC	9 cut(s)	561, 805, 1550, 1846, 2750, 2883, 2950, 3061, 3686
Hpy8I	GTNNAC	9 cut(s)	561, 805, 1550, 1846, 2750, 2883, 2950, 3061, 3686
Hpy99I	CGWCG	5 cut(s)	131, 263, 266, 302, 1449
HspAI	GCGC	7 cut(s)	11, 27, 46, 122, 245, 268, 3100
Ksp22I	TGATCA	2 cut(s)	1131, 3289
LguI	GCTCTTC	2 cut(s)	89, 3019
LmnI	GCTCC	8 cut(s)	43, 61, 318, 773, 1066, 1215, 1435, 3805
LweI	GCATC	7 cut(s)	268, 458, 1360, 2362, 2369, 2865, 3115
MaeI	CTAG	8 cut(s)	644, 1020, 1827, 1838, 2148, 2415, 2753, 3414
MbiI	CCGCTC	1 cut(s)	776
MfeI	CAATTG	2 cut(s)	435, 1761
MflI	RGATCY	5 cut(s)	142, 1345, 1834, 2622, 3364
MhlI	GDGCHC	7 cut(s)	182, 385, 1212, 3401, 3688, 3810, 3942
MlsI	TGGCCA	1 cut(s)	3276
MluNI	TGGCCA	1 cut(s)	3276
MlyI	GAGTC	7 cut(s)	60, 177, 568, 1163, 3184, 3599, 3785
MmeI	TCCRAC	8 cut(s)	368, 374, 812, 2542, 2990, 3112, 3392, 3759
Mox20I	TGGCCA	1 cut(s)	3276
Mph1103I	ATGCAT	1 cut(s)	2939
MroXI	GAANNNNTTC	3 cut(s)	1417, 2481, 3139
MscI	TGGCCA	1 cut(s)	3276
MslI	CAYNNNNRTG	7 cut(s)	240, 617, 2202, 2526, 3056, 3979, 4071
Msp20I	TGGCCA	1 cut(s)	3276
MspA1I	CMGCKG	3 cut(s)	598, 2048, 2972
MspCI	CTTAAG	2 cut(s)	2260, 3836
MspI	CCGG	7 cut(s)	216, 307, 519, 1433, 1553, 1819, 3802
MunI	CAATTG	2 cut(s)	435, 1761
Mva1269I	GAATGC	3 cut(s)	2275, 2821, 3618
MvaI	CCWGG	9 cut(s)	91, 379, 1429, 1596, 1832, 1970, 3409, 3476, 3920
MvnI	CGCG	2 cut(s)	27, 297
NciI	CCSGG	3 cut(s)	307, 519, 3803
NcoI	CCATGG	1 cut(s)	618
NdeI	CATATG	1 cut(s)	1090
NlaIV	GGNNCC	7 cut(s)	314, 602, 2255, 2624, 3366, 3406, 3613
NmeAIII	GCCGAG	2 cut(s)	136, 252
NmuCI	GTSAC	7 cut(s)	115, 424, 1271, 1680, 1692, 2766, 3259
NruI	TCGCGA	1 cut(s)	297
NsiI	ATGCAT	1 cut(s)	2939
NspI	RCATGY	5 cut(s)	1523, 1739, 1774, 2937, 3899
NspV	TTCGAA	1 cut(s)	2876
PaeI	GCATGC	2 cut(s)	1739, 1774
PciSI	GCTCTTC	2 cut(s)	89, 3019
PctI	GAATGC	3 cut(s)	2275, 2821, 3618
PdmI	GAANNNNTTC	3 cut(s)	1417, 2481, 3139
PflMI	CCANNNNNTGG	1 cut(s)	2524
PfoI	TCCNGGA	3 cut(s)	89, 3407, 3801
PinAI	ACCGGT	1 cut(s)	1552
PleI	GAGTC	7 cut(s)	60, 176, 568, 1162, 3183, 3599, 3785
PpsI	GAGTC	7 cut(s)	60, 176, 568, 1162, 3183, 3599, 3785
PpuMI	RGGWCCY	1 cut(s)	3611
PshAI	GACNNNNGTC	1 cut(s)	3609
PshBI	ATTAAT	1 cut(s)	633
Psp124BI	GAGCTC	2 cut(s)	3401, 3810
Psp5II	RGGWCCY	1 cut(s)	3611
Psp6I	CCWGG	9 cut(s)	89, 377, 1427, 1594, 1830, 1968, 3407, 3474, 3918
PspEI	GGTNACC	1 cut(s)	2766
PspFI	CCCAGC	3 cut(s)	1569, 1888, 3614
PspGI	CCWGG	9 cut(s)	89, 377, 1427, 1594, 1830, 1968, 3407, 3474, 3918
PspN4I	GGNNCC	7 cut(s)	314, 602, 2255, 2624, 3366, 3406, 3613
PspPPI	RGGWCCY	1 cut(s)	3611
PsrI	GAACNNNNNNTAC	2 cut(s)	1302, 1334
PstI	CTGCAG	4 cut(s)	498, 1162, 2293, 3670
PstNI	CAGNNNCTG	2 cut(s)	1157, 3287
PsuI	RGATCY	5 cut(s)	142, 1345, 1834, 2622, 3364
PvuII	CAGCTG	2 cut(s)	2048, 2972
RruI	TCGCGA	1 cut(s)	297
RsaI	GTAC	7 cut(s)	873, 1140, 1549, 1708, 3043, 3743, 3768
RsaNI	GTAC	7 cut(s)	872, 1139, 1548, 1707, 3042, 3742, 3767
RseI	CAYNNNNRTG	7 cut(s)	240, 617, 2202, 2526, 3056, 3979, 4071
SacI	GAGCTC	2 cut(s)	3401, 3810
SapI	GCTCTTC	2 cut(s)	89, 3019
ScaI	AGTACT	2 cut(s)	3043, 3743
SchI	GAGTC	7 cut(s)	60, 177, 568, 1163, 3184, 3599, 3785
SduI	GDGCHC	7 cut(s)	182, 385, 1212, 3401, 3688, 3810, 3942
SfaNI	GCATC	7 cut(s)	268, 458, 1360, 2362, 2369, 2865, 3115
SfcI	CTRYAG	8 cut(s)	494, 690, 801, 1158, 1408, 2274, 2289, 3666
SfuI	TTCGAA	1 cut(s)	2876
SinI	GGWCC	8 cut(s)	1384, 2354, 2893, 3061, 3502, 3556, 3611, 3735
SmiMI	CAYNNNNRTG	7 cut(s)	240, 617, 2202, 2526, 3056, 3979, 4071
SmlI	CTYRAG	9 cut(s)	149, 227, 706, 751, 1936, 2260, 3770, 3836, 3946
SmoI	CTYRAG	9 cut(s)	149, 227, 706, 751, 1936, 2260, 3770, 3836, 3946
SphI	GCATGC	2 cut(s)	1739, 1774
SspMI	CTAG	8 cut(s)	644, 1020, 1827, 1838, 2148, 2415, 2753, 3414
SstI	GAGCTC	2 cut(s)	3401, 3810
StyI	CCWWGG	5 cut(s)	30, 39, 618, 3255, 3360
TaqI	TCGA	9 cut(s)	81, 129, 264, 1012, 1061, 1258, 2493, 2876, 3702
TaqII	GACCGA	1 cut(s)	2430
TatI	WGTACW	4 cut(s)	1138, 3041, 3741, 3766
TauI	GCSGC	3 cut(s)	206, 601, 3435
TseFI	GTSAC	7 cut(s)	115, 424, 1271, 1680, 1692, 2766, 3259
Tsp45I	GTSAC	7 cut(s)	115, 424, 1271, 1680, 1692, 2766, 3259
TspGWI	ACGGA	3 cut(s)	572, 1376, 3108
Van91I	CCANNNNNTGG	1 cut(s)	2524
Vha464I	CTTAAG	2 cut(s)	2260, 3836
VneI	GTGCAC	1 cut(s)	3684
VpaK11BI	GGWCC	8 cut(s)	1384, 2354, 2893, 3061, 3502, 3556, 3611, 3735
VspI	ATTAAT	1 cut(s)	633
XapI	RAATTY	9 cut(s)	1995, 2469, 2488, 2980, 3013, 3316, 3448, 3753, 4092
XceI	RCATGY	5 cut(s)	1523, 1739, 1774, 2937, 3899
XcmI	CCANNNNNNNNNTGG	2 cut(s)	46, 882
XmiI	GTMKAC	3 cut(s)	560, 804, 2949
XmnI	GAANNNNTTC	3 cut(s)	1417, 2481, 3139
XspI	CTAG	8 cut(s)	644, 1020, 1827, 1838, 2148, 2415, 2753, 3414
ZrmI	AGTACT	2 cut(s)	3043, 3743
Zsp2I	ATGCAT	1 cut(s)	2939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.