Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001491.1

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

28121 .. 29983

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001491.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgcttgcggacgctcttagtccaaatattatgaacactcttagttcattgattacgaacgcttttagggtagcaggcgtgcgacgatgctgcaggggcagtaggaggcacacaggtgctcaagggctgcgggggcagcgcatgtgcactcgtgatccaacattccctgctgtcccagtttctaatcatctttcaaactctctaatgacagattcaaccacctcaagtaacaaaggtagtaaccgcaatgatgccctggttttgtgtgatatcattacgcaaattcaagcttccaaagattctgttgaatcatcatatcgcagcaggaggagaggttttgatgatagccagctctcacaggagatggcaaatcatgtagaaggtccagcatcgttcaatgatgctctgagcgaaggactgagttcatcttcagactggtcagctagggttgctgcatttaattatcttcggtctttgttgcagcaaggccaaagaggaattcaagaagtgattcagaatttcgagaaagtaacgaagttgtttttccaacacttggataatccgcaccacaaaattgcacaatcagccttttcaacactggcagatattatcccatcttgtcgtaagccccttgaaagttccatggaaaggatcccacctcatgttttctcacagttagttgacccagaggagttagttaggcaaccttgctcaacaactttggtcattgttggcaagactccctgttacatgctttgcttccttcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

256

Amino Acids

28.37

Weight (kDa)

8.68

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	553
AciI	CCGC	4 cut(s)	8, 130, 244, 563
AclWI	GGATC	3 cut(s)	149, 646, 659
AcsI	RAATTY	3 cut(s)	282, 498, 517
AcuI	CTGAAG	1 cut(s)	414
AfiI	CCNNNNNNNGG	2 cut(s)	553, 648
AgsI	TTSAA	8 cut(s)	195, 216, 287, 308, 397, 503, 594, 635
AjnI	CCWGG	1 cut(s)	255
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
AleI	CACNNNNGTG	1 cut(s)	114
AluBI	AGCT	3 cut(s)	290, 352, 443
AluI	AGCT	3 cut(s)	290, 352, 443
Alw21I	GWGCWC	2 cut(s)	121, 149
Alw44I	GTGCAC	1 cut(s)	145
AlwI	GGATC	3 cut(s)	149, 646, 659
AoxI	GGCC	1 cut(s)	487
ApaLI	GTGCAC	1 cut(s)	145
ApeKI	GCWGC	6 cut(s)	90, 127, 136, 321, 452, 481
ApoI	RAATTY	3 cut(s)	282, 498, 517
Asp700I	GAANNNNTTC	1 cut(s)	510
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	651
BauI	CACGAG	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	121, 149
BbvI	GCAGC	6 cut(s)	77, 114, 148, 333, 439, 493
BccI	CCATC	2 cut(s)	358, 622
BcgI	CGANNNNNNTGC	2 cut(s)	72, 106
BciT130I	CCWGG	1 cut(s)	257
BfaI	CTAG	2 cut(s)	444, 769
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	6 cut(s)	91, 128, 137, 322, 453, 482
BlsI	GCNGC	6 cut(s)	92, 129, 138, 323, 454, 483
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	653
BmrFI	CCNGG	1 cut(s)	257
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	4 cut(s)	77, 241, 391, 398
BmuI	ACTGGG	1 cut(s)	170
BpuEI	CTTGAG	2 cut(s)	105, 208
BsaJI	CCNNGG	2 cut(s)	255, 642
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 648
Bse1I	ACTGG	3 cut(s)	176, 440, 603
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	255, 642
BseLI	CCNNNNNNNGG	2 cut(s)	553, 648
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	398, 410
BseNI	ACTGG	3 cut(s)	176, 440, 603
BseRI	GAGGAG	2 cut(s)	343, 704
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	6 cut(s)	77, 114, 148, 333, 439, 493
BshFI	GGCC	1 cut(s)	489
BsiHKAI	GWGCWC	2 cut(s)	121, 149
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	553, 648
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	489
Bsp1286I	GDGCHC	2 cut(s)	121, 149
Bsp143I	GATC	2 cut(s)	154, 651
Bsp19I	CCATGG	1 cut(s)	642
BspACI	CCGC	4 cut(s)	8, 130, 244, 563
BspANI	GGCC	1 cut(s)	489
BspCNI	CTCAG	2 cut(s)	399, 411
BspLI	GGNNCC	1 cut(s)	653
BspMAI	CTGCAG	1 cut(s)	95
BspPI	GGATC	3 cut(s)	149, 646, 659
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	3 cut(s)	176, 440, 603
BssECI	CCNNGG	2 cut(s)	255, 642
BssMI	GATC	2 cut(s)	154, 651
BssSI	CACGAG	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	642
Bst2BI	CACGAG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	675
BstC8I	GCNNGC	4 cut(s)	6, 76, 80, 350
BstDEI	CTNAG	4 cut(s)	17, 41, 407, 419
BstDSI	CCRYGG	1 cut(s)	642
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	157, 654
BstMBI	GATC	2 cut(s)	154, 651
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 133, 136, 449, 584
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	2 cut(s)	145, 754
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	149
BstV1I	GCAGC	6 cut(s)	77, 114, 148, 333, 439, 493
BstX2I	RGATCY	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	651
BsuRI	GGCC	1 cut(s)	489
BtgI	CCRYGG	1 cut(s)	642
BtsIMutI	CAGTG	1 cut(s)	596
Cac8I	GCNNGC	4 cut(s)	6, 76, 80, 350
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	1 cut(s)	20
CviAII	CATG	5 cut(s)	142, 374, 643, 662, 751
CviJI	RGCY	8 cut(s)	127, 290, 348, 352, 443, 489, 587, 628
CviKI_1	RGCY	8 cut(s)	127, 290, 348, 352, 443, 489, 587, 628
DdeI	CTNAG	4 cut(s)	17, 41, 407, 419
DpnI	GATC	2 cut(s)	156, 653
DpnII	GATC	2 cut(s)	154, 651
Eco130I	CCWWGG	1 cut(s)	642
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	414
EcoRI	GAATTC	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	255
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	642
FaeI	CATG	5 cut(s)	145, 377, 646, 665, 754
FaiI	YATR	7 cut(s)	32, 143, 316, 375, 644, 663, 752
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	5 cut(s)	141, 373, 642, 661, 750
FauI	CCCGC	1 cut(s)	123
Fnu4HI	GCNGC	6 cut(s)	91, 128, 137, 322, 453, 482
Fsp4HI	GCNGC	6 cut(s)	91, 128, 137, 322, 453, 482
FspBI	CTAG	2 cut(s)	444, 769
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	6 cut(s)	91, 128, 137, 322, 453, 482
HaeIII	GGCC	1 cut(s)	489
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	5 cut(s)	145, 377, 646, 665, 754
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	5 cut(s)	212, 299, 308, 511, 739
Hpy166II	GTNNAC	2 cut(s)	147, 682
Hpy188I	TCNGA	3 cut(s)	408, 433, 516
Hpy188III	TCNNGA	3 cut(s)	152, 503, 523
Hpy8I	GTNNAC	2 cut(s)	147, 682
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	374, 407
HpyCH4III	ACNGT	1 cut(s)	675
HpyCH4V	TGCA	5 cut(s)	93, 147, 455, 481, 578
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 133, 136, 449, 584
HpyF3I	CTNAG	4 cut(s)	17, 41, 407, 419
Hsp92II	CATG	5 cut(s)	145, 377, 646, 665, 754
HspAI	GCGC	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	154, 651
Lsp1109I	GCAGC	6 cut(s)	77, 114, 148, 333, 439, 493
LweI	GCATC	4 cut(s)	77, 241, 391, 398
MaeI	CTAG	2 cut(s)	444, 769
MaeIII	GTNAC	4 cut(s)	227, 239, 529, 746
MalI	GATC	2 cut(s)	156, 653
MboI	GATC	2 cut(s)	154, 651
MboII	GAAGA	2 cut(s)	420, 458
MflI	RGATCY	1 cut(s)	651
MhlI	GDGCHC	2 cut(s)	121, 149
MluCI	AATT	5 cut(s)	282, 460, 498, 517, 573
MlyI	GAGTC	1 cut(s)	733
MmeI	TCCRAC	2 cut(s)	182, 571
MnlI	CCTC	7 cut(s)	99, 232, 321, 326, 488, 669, 682
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	5 cut(s)	96, 133, 136, 449, 584
NcoI	CCATGG	1 cut(s)	642
NdeII	GATC	2 cut(s)	154, 651
NlaIII	CATG	5 cut(s)	145, 377, 646, 665, 754
NlaIV	GGNNCC	1 cut(s)	653
NspI	RCATGY	2 cut(s)	145, 754
OliI	CACNNNNGTG	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	4 cut(s)	212, 299, 308, 511
PflMI	CCANNNNNTGG	1 cut(s)	553
PkrI	GCNGC	6 cut(s)	92, 129, 138, 323, 454, 483
PleI	GAGTC	1 cut(s)	733
PpsI	GAGTC	1 cut(s)	733
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	653
PspPI	GGNCC	1 cut(s)	383
PstI	CTGCAG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	651
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	6 cut(s)	91, 128, 137, 322, 453, 482
Sau3AI	GATC	2 cut(s)	154, 651
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	733
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	121, 149
SfaNI	GCATC	4 cut(s)	77, 241, 391, 398
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	120, 223
SmoI	CTYRAG	2 cut(s)	120, 223
Sse9I	AATT	5 cut(s)	282, 460, 498, 517, 573
SsiI	CCGC	4 cut(s)	8, 130, 244, 563
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	2 cut(s)	444, 769
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	1 cut(s)	675
TaqI	TCGA	1 cut(s)	522
TaqII	GACCGA	1 cut(s)	459
TasI	AATT	5 cut(s)	282, 460, 498, 517, 573
TfiI	GAWTC	4 cut(s)	212, 299, 308, 511
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	1 cut(s)	603
TseI	GCWGC	6 cut(s)	90, 127, 136, 321, 452, 481
TspDTI	ATGAA	3 cut(s)	36, 47, 414
TspRI	CASTG	1 cut(s)	603
Van91I	CCANNNNNTGG	1 cut(s)	553
VneI	GTGCAC	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	3 cut(s)	282, 498, 517
XceI	RCATGY	2 cut(s)	145, 754
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	2 cut(s)	444, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.