Rorug06G0175400

CLASP N terminal

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
27495075 .. 27497251
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0175400.1

Sequence Viewer

Length: 1071 bp
ATGGCTGCAGTTGCTCAGGCCTTAGAGACCCCCTCATCTGTTACCAGCATCAAATCACTAGCTGAGTCCTCTGCTCTAAACACTGTCCCTTCTGCCTATGCCTTCAACATAAACCCCAATGACGAAGCAGATCCAAAAGATCCTGAATTCGCAATTCCTATCATCGATATGTCACTTCTCACATCTGGTACTCCTGAACAACGCTCCCAAATCATCCATGACCTCGTCAAGATTTGTCAAGAATGGGGCTTCTTCATAGCAATTAACCATGGAGTACCAGAGAGCCTAATGAAGGCGATGATTGACGCATGTCATGGCTTCTTCAGTCTTCCAGACGAGGAGAAGAAGGAATTCAAATCAGGGAATGATGTGCTAGAAATGTTCAAGTATGGTACCAGTTATAACCTTGCCTTGGATAAGGTCCTTCTTTGGAGGGACTTCTTCAAGGTAAGAACCCATCCTGAGTTTTACTCCCTCTACAAACCGGCTACCTTCAGTGAGGTTTCAATGGAGTTTGGCAAAAGAACAAGAGAAGTGGCACTAGAAATCACTAAAGCAATATCCGAAAGCCTGGGATTGGAGCCAAATTACATATACGAAAAGATGAACATGGATCGTGGCTTACAATTGTTGGCCGGGAACTACTATCCTCCTTGCCCTCAGCCGGAACATGCCATTGGTATACCACATCACACCGATCACGGTCTAGTCACACTCCTCATCCAGAATGAGATGAATGGCCTCCAAGTCGAACACAACGGAAAATGGCTCACCGTAAACGGCCCTGCCAATGGATTTTTTGTTAACCTTGCTGATCAAATGCAGATTTTTACCAATGGTAAATACAAGAGTGTGATGCATAGGGCGACTGTGAACAACAAAGCAACGAGGATATCAATAGCCATACCACATGGACCTTCTGTAGATACAACTATTGCTCCAGCTCCAGAGCTGTGTGAAAGAGAAGGCAAACCTCCCAAGTATCTTGCCATGAACTACAAGGAGTACATTCAGCTTCAGCAGAGCGGCAAGAACTACATGAAGTCCACATTCGATCACATACTAGCCTAG

Protein Analysis

356

Amino Acids

39.89

Weight (kDa)

5.75

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 52 - 156 6.1e-26 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 209 - 303 1.1e-28 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
Acc65I GGTACC 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 392
AccBSI CCGCTC 1 cut(s) 1026
AccI GTMKAC 1 cut(s) 682
AciI CCGC 1 cut(s) 1026
AclWI GGATC 3 cut(s) 125, 134, 621
AcoI YGGCCR 1 cut(s) 633
AcsI RAATTY 2 cut(s) 146, 350
AcuI CTGAAG 3 cut(s) 307, 478, 1001
AfaI GTAC 4 cut(s) 190, 276, 394, 1007
AfiI CCNNNNNNNGG 5 cut(s) 292, 412, 577, 664, 791
AgsI TTSAA 5 cut(s) 106, 355, 385, 445, 507
AjnI CCWGG 1 cut(s) 570
AjuI GAANNNNNNNTTGG 2 cut(s) 660, 692
AluBI AGCT 4 cut(s) 62, 944, 952, 1015
AluI AGCT 4 cut(s) 62, 944, 952, 1015
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 3 cut(s) 125, 134, 621
AoxI GGCC 4 cut(s) 18, 633, 739, 781
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 146, 350
Asp700I GAANNNNTTC 1 cut(s) 350
Asp718I GGTACC 1 cut(s) 392
AspS9I GGNCC 3 cut(s) 421, 782, 914
AsuC2I CCSGG 1 cut(s) 637
AsuHPI GGTGA 1 cut(s) 763
AvaII GGWCC 2 cut(s) 421, 914
BanI GGYRCC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 320
BbvCI CCTCAGC 1 cut(s) 660
BccI CCATC 1 cut(s) 465
BceAI ACGGC 1 cut(s) 796
BciT130I CCWGG 1 cut(s) 572
BclI TGATCA 1 cut(s) 814
BcnI CCSGG 1 cut(s) 637
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 6 cut(s) 59, 374, 542, 707, 1064, 1069
BfmI CTRYAG 2 cut(s) 6, 921
BisI GCNGC 2 cut(s) 6, 1027
BlsI GCNGC 2 cut(s) 7, 1028
Bme1390I CCNGG 2 cut(s) 572, 637
Bme18I GGWCC 2 cut(s) 421, 914
BmgT120I GGNCC 3 cut(s) 421, 782, 914
BmiI GGNNCC 2 cut(s) 394, 582
BmrFI CCNGG 2 cut(s) 572, 637
BmsI GCATC 2 cut(s) 57, 846
BoxI GACNNNNGTC 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 320
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 455, 487
BpmI CTGGAG 2 cut(s) 924, 930
Bpu10I CCTNAGC 2 cut(s) 15, 660
BpuMI CCSGG 1 cut(s) 637
Bsa29I ATCGAT 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 268, 411, 571
BsaXI ACNNNNNCTCC 2 cut(s) 922, 952
Bsc4I CCNNNNNNNGG 5 cut(s) 292, 412, 577, 664, 791
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 572
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 3 cut(s) 268, 411, 571
BseGI GGATG 3 cut(s) 213, 457, 720
BseLI CCNNNNNNNGG 5 cut(s) 292, 412, 577, 664, 791
BseMII CTCAG 4 cut(s) 29, 54, 453, 674
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 2 cut(s) 353, 707
BshFI GGCC 4 cut(s) 20, 635, 741, 783
BshNI GGYRCC 1 cut(s) 392
BshVI ATCGAT 1 cut(s) 165
BsiSI CCGG 3 cut(s) 485, 636, 665
BslFI GGGAC 2 cut(s) 71, 449
BslI CCNNNNNNNGG 5 cut(s) 292, 412, 577, 664, 791
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 2 cut(s) 71, 449
BsnI GGCC 4 cut(s) 20, 635, 741, 783
Bso31I GGTCTC 1 cut(s) 20
Bsp143I GATC 6 cut(s) 130, 139, 613, 697, 814, 1054
Bsp19I CCATGG 1 cut(s) 268
BspACI CCGC 1 cut(s) 1026
BspANI GGCC 4 cut(s) 20, 635, 741, 783
BspCNI CTCAG 4 cut(s) 28, 55, 454, 673
BspDI ATCGAT 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 394, 582
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 3 cut(s) 125, 134, 621
BspT107I GGYRCC 1 cut(s) 392
BspTNI GGTCTC 1 cut(s) 20
BsrBI CCGCTC 1 cut(s) 1026
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 1 cut(s) 396
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 3 cut(s) 268, 411, 571
BssMI GATC 6 cut(s) 130, 139, 613, 697, 814, 1054
BssNAI GTATAC 1 cut(s) 683
BssT1I CCWWGG 2 cut(s) 268, 411
Bst1107I GTATAC 1 cut(s) 683
Bst2UI CCWGG 1 cut(s) 572
Bst4CI ACNGT 4 cut(s) 85, 704, 775, 871
BstDEI CTNAG 5 cut(s) 15, 22, 63, 462, 660
BstDSI CCRYGG 1 cut(s) 268
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 3 cut(s) 213, 457, 720
BstKTI GATC 6 cut(s) 133, 142, 616, 700, 817, 1057
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 6 cut(s) 130, 139, 613, 697, 814, 1054
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 572
BstNSI RCATGY 2 cut(s) 312, 674
BstPAI GACNNNNGTC 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 570, 635
BstSFI CTRYAG 2 cut(s) 6, 921
BstV2I GAAGAC 1 cut(s) 320
BstX2I RGATCY 2 cut(s) 130, 139
BstYI RGATCY 2 cut(s) 130, 139
BstZ17I GTATAC 1 cut(s) 683
Bsu15I ATCGAT 1 cut(s) 165
BsuRI GGCC 4 cut(s) 20, 635, 741, 783
BsuTUI ATCGAT 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 311
BtsCI GGATG 3 cut(s) 213, 457, 720
BtsIMutI CAGTG 2 cut(s) 81, 502
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 3 cut(s) 421, 782, 914
ClaI ATCGAT 1 cut(s) 165
CseI GACGC 1 cut(s) 314
Csp6I GTAC 4 cut(s) 189, 275, 393, 1006
CspCI CAANNNNNGTGG 2 cut(s) 516, 551
CviAII CATG 9 cut(s) 218, 269, 309, 314, 610, 671, 911, 991, 1039
CviQI GTAC 4 cut(s) 189, 275, 393, 1006
DdeI CTNAG 5 cut(s) 15, 22, 63, 462, 660
DpnI GATC 6 cut(s) 132, 141, 615, 699, 816, 1056
DpnII GATC 6 cut(s) 130, 139, 613, 697, 814, 1054
EaeI YGGCCR 1 cut(s) 633
Eco130I CCWWGG 2 cut(s) 268, 411
Eco147I AGGCCT 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 20
Eco32I GATATC 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 421, 914
Eco57I CTGAAG 3 cut(s) 307, 478, 1001
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 421
EcoRI GAATTC 2 cut(s) 146, 350
EcoRII CCWGG 1 cut(s) 570
EcoRV GATATC 1 cut(s) 894
EcoT14I CCWWGG 2 cut(s) 268, 411
EcoT22I ATGCAT 1 cut(s) 861
ErhI CCWWGG 2 cut(s) 268, 411
FaeI CATG 9 cut(s) 221, 272, 312, 317, 613, 674, 914, 994, 1042
FaqI GGGAC 2 cut(s) 71, 449
FatI CATG 9 cut(s) 217, 268, 308, 313, 609, 670, 910, 990, 1038
FbaI TGATCA 1 cut(s) 814
FblI GTMKAC 1 cut(s) 682
Fnu4HI GCNGC 2 cut(s) 6, 1027
FokI GGATG 3 cut(s) 200, 444, 707
Fsp4HI GCNGC 2 cut(s) 6, 1027
FspBI CTAG 6 cut(s) 59, 374, 542, 707, 1064, 1069
GluI GCNGC 2 cut(s) 6, 1027
GsuI CTGGAG 2 cut(s) 924, 930
HaeIII GGCC 4 cut(s) 20, 635, 741, 783
HapII CCGG 3 cut(s) 485, 636, 665
HgaI GACGC 1 cut(s) 314
Hin1II CATG 9 cut(s) 221, 272, 312, 317, 613, 674, 914, 994, 1042
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HinfI GANTC 1 cut(s) 65
HpaI GTTAAC 1 cut(s) 805
HpaII CCGG 3 cut(s) 485, 636, 665
HphI GGTGA 1 cut(s) 763
Hpy166II GTNNAC 5 cut(s) 683, 778, 805, 874, 1047
Hpy188I TCNGA 1 cut(s) 565
Hpy188III TCNNGA 8 cut(s) 143, 194, 229, 239, 332, 461, 724, 947
Hpy8I GTNNAC 5 cut(s) 683, 778, 805, 874, 1047
HpyAV CCTTC 8 cut(s) 99, 112, 286, 340, 434, 502, 927, 959
HpyCH4III ACNGT 4 cut(s) 85, 704, 775, 871
HpyCH4V TGCA 3 cut(s) 8, 823, 859
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 5 cut(s) 15, 22, 63, 462, 660
Hsp92II CATG 9 cut(s) 221, 272, 312, 317, 613, 674, 914, 994, 1042
KpnI GGTACC 1 cut(s) 396
Ksp22I TGATCA 1 cut(s) 814
KspAI GTTAAC 1 cut(s) 805
Kzo9I GATC 6 cut(s) 130, 139, 613, 697, 814, 1054
LmnI GCTCC 4 cut(s) 209, 580, 943, 949
LweI GCATC 2 cut(s) 57, 846
MaeI CTAG 6 cut(s) 59, 374, 542, 707, 1064, 1069
MaeIII GTNAC 3 cut(s) 40, 171, 709
MalI GATC 6 cut(s) 132, 141, 615, 699, 816, 1056
MbiI CCGCTC 1 cut(s) 1026
MboI GATC 6 cut(s) 130, 139, 613, 697, 814, 1054
MboII GAAGA 5 cut(s) 244, 313, 320, 355, 433
MfeI CAATTG 1 cut(s) 626
MflI RGATCY 2 cut(s) 130, 139
MluCI AATT 6 cut(s) 146, 153, 261, 350, 586, 626
MlyI GAGTC 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 861
MroXI GAANNNNTTC 1 cut(s) 350
MseI TTAA 2 cut(s) 264, 804
MslI CAYNNNNRTG 1 cut(s) 167
MspI CCGG 3 cut(s) 485, 636, 665
MspR9I CCNGG 2 cut(s) 572, 637
MunI CAATTG 1 cut(s) 626
MvaI CCWGG 1 cut(s) 572
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 637
NcoI CCATGG 1 cut(s) 268
NdeII GATC 6 cut(s) 130, 139, 613, 697, 814, 1054
NlaIII CATG 9 cut(s) 221, 272, 312, 317, 613, 674, 914, 994, 1042
NlaIV GGNNCC 2 cut(s) 394, 582
NmuCI GTSAC 2 cut(s) 171, 709
NsiI ATGCAT 1 cut(s) 861
NspI RCATGY 2 cut(s) 312, 674
PceI AGGCCT 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 350
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 7, 1028
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PpuMI RGGWCCY 1 cut(s) 421
PshAI GACNNNNGTC 1 cut(s) 309
PsiI TTATAA 1 cut(s) 402
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 570
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 2 cut(s) 394, 582
PspPI GGNCC 3 cut(s) 421, 782, 914
PspPPI RGGWCCY 1 cut(s) 421
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 2 cut(s) 130, 139
PsyI GACNNNGTC 1 cut(s) 224
RsaI GTAC 4 cut(s) 190, 276, 394, 1007
RsaNI GTAC 4 cut(s) 189, 275, 393, 1006
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 2 cut(s) 264, 804
SatI GCNGC 2 cut(s) 6, 1027
Sau3AI GATC 6 cut(s) 130, 139, 613, 697, 814, 1054
Sau96I GGNCC 3 cut(s) 421, 782, 914
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 572, 637
SfaNI GCATC 2 cut(s) 57, 846
SfcI CTRYAG 2 cut(s) 6, 921
SinI GGWCC 2 cut(s) 421, 914
SmiMI CAYNNNNRTG 1 cut(s) 167
Sse9I AATT 6 cut(s) 146, 153, 261, 350, 586, 626
SseBI AGGCCT 1 cut(s) 20
SsiI CCGC 1 cut(s) 1026
SspMI CTAG 6 cut(s) 59, 374, 542, 707, 1064, 1069
StuI AGGCCT 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 570, 635
StyI CCWWGG 2 cut(s) 268, 411
TaaI ACNGT 4 cut(s) 85, 704, 775, 871
TaqI TCGA 3 cut(s) 165, 750, 1053
TasI AATT 6 cut(s) 146, 153, 261, 350, 586, 626
TatI WGTACW 1 cut(s) 1005
TauI GCSGC 1 cut(s) 1029
Tru1I TTAA 2 cut(s) 264, 804
Tru9I TTAA 2 cut(s) 264, 804
TscAI CASTG 2 cut(s) 88, 502
TseFI GTSAC 2 cut(s) 171, 709
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 171, 709
TspDTI ATGAA 6 cut(s) 244, 305, 620, 749, 1007, 1055
TspGWI ACGGA 1 cut(s) 774
TspRI CASTG 2 cut(s) 88, 502
Tth111I GACNNNGTC 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 421, 914
XagI CCTNNNNNAGG 1 cut(s) 290
XapI RAATTY 2 cut(s) 146, 350
XceI RCATGY 2 cut(s) 312, 674
XmiI GTMKAC 1 cut(s) 682
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 6 cut(s) 59, 374, 542, 707, 1064, 1069
Zsp2I ATGCAT 1 cut(s) 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.