Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

48327590 .. 48337720

Gene Structure 10131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG287000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3939 bp

ATGGAGGAAGCGCTTGAACTCGCACGCGCCAAGGACACCAAGGAGCGCATGGCCGGAGTGGAGCGCCTCCACCAGCTTCTCGAAGCTTCCAGGAAGAGCCTCACTTCGGCCGAGGTCACTGCGCTCGTCGATTGCTGCATGGATCTTCTCAAGGACAACAACTTCCGAGTCTCCCAGGGCTCTCTTCAGGCCCTCGCCTCCGCCGCCGTCCTCTCCGGCGACCATCTCAAGCTTCATTTCAATGCGCTTGTCCCCGCCGTCGTCGAGCGCCTCGGCGATGCCAAACAGCCCGTTCGCGACGCTGCCCGGAGGCTCCTGCTTACTCTTATGGAGGTGTCTTCTCCAACGCTCATTGTTGAAAGAGCAGGTTCTTATGCCTGGGCACACAAAAGTTGGAGAGTTAGAGAGGAGTTTGCACGAACTGTCACCTCAGCAATTGGACTTTTTGCATCAACCGAACTTCCTCTTCAGCGTGCCATACTTCCTCCGATTCTGCAGATGTTAAGTGATTCAAATCCCGGTGTAAGGGACGCAGCTATATTGTGCATTGAGGAGATGTATACGCAGGCAGGGACTCAGTTCCGTGATGAACTTCAGCGGCACCATCTTCCCATGTCCATGGTGAAGGATATTAATGCAAGACTAGAGAGGATTGAACCTAAGAATCGCTCATCAGATGGACTTGCTGCTGTAGAAACAAAACCCTTGAGCCATAACCCAAAGAGAAATAGTCCAAAGGCTAAGAGTTCCTCAAGGGAGGTATCTCAATTTGGAGCGGAAACTGATCCAACTGTAAAATCTGTAGACCCTATAAAAGTTTATTCTGAAAAGGAACTAATAAGAGAAGTGGAGAAAATAGCTTCTACCCTTGTACCAGAGAAAGACTGGTCAATTCGGATTGCTGCAATGCAGAGAATAGAAGGGCTTGTATATGGAGGTGCTGCTGATTATCAATCATTTCGGGGACTTTTGAAGCAACTTGTGAATCCTCTGAACACACAGTTATCTGATCGAAGGTCTAGCATAGTGAAGCAGGCTTGCCATCTGTTATGCTTTTTGTCGAAGGAGCTATTGGGAGATTTTGAGGCATATGCAGAGATTTTCATTCCAGTCCTTTTCAAGCTGGTTGTGATCACTGTACTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGTTGCGTAACTGTAAAGTTGCTCGGGTGCTCCCTCGTATTGCGGATTGTGCAAAGAATGACCGTAATGCAATACTTCGAGCAAGGTGCTGTGACTATGCACTGTTGATACTGGAGTATTGGGCCGATGAACCTGAAATACAGAGATCGGCAGATTTGTATGAAGATCTAATAAGATGTTGTGTTGCAGATGCAATGAGCGAGGTCCGTTCAACTGCAAGAATGTGCTACAGAATGTTTTCAAAAACCTGGCCGGAGCGTTCCCGACGACTATTTTCACTATTTGATCCCGTTATTCAAAGGTTAATCAATGAAGAGGATGGGGGGATACATAGGCGACATGCTTCTCCATCTGTTCGTGATAGGGGTACACCGGTCTCATTTACTCCCCAGCCATCTGCTTCCGCTAATCTACCTGGATATGGAACTTCGGCTATTGTTGCAATGGATAGAAGTTCAAGTTTATCCTCTGGGACTTCTTTCTCTTCAGGACTTCATCTGTCACAAGCGAAGTCACATGGTAAAGGTACTGAGCGTAGTCTGGAAAGTGTGTTGCATGCAAGCAAACAGAAGGTCAGTGCAATTGAAAGCATGCTTAGAGGTTTGGAGTTGTCTGACAGACATAATTCTTCAACTCTCCGGTCATCTAGTCTGGATCTAGATTCAACCACCTCAAATAACAAAGGTAGTAACCGCAATGGTGGCCTGGTTTTGTCTGATATCATTACGCAAATTCAAGCTTCCAAAGATTCCGCTAAATCATCATATCGCAGTAATTTATCAGCTGAAACACTGCCAACTGTTTCATCCTACAACATAAAGAGGGCTTCTGAGAGAATCCACGAAAGGGGTTTCATTGAAGAGAATACTGACAGTAGGGAAGCTAGGCGAACTATGAATCATCAAGCTGACAGGCATTATTTGGACACATCTCACAGGGATGGAAACTTTAGGGATTCACATAATAACCATATCCCAAATTTTCAAAGGCCCCTCTTAAGAAAGAATGCTACAGGAAGGATATCTGCAGGCAGGAGGAGAAGTTTTGATGATAGCCAACTCTCACAGGAGATGGCAAATTATGTAGAAGGTCCAGCATCGCTAAATGATGCTTTGAGTGAAGGACTAAGTTCATCTTCAGACTGGTCAGCTAGGGTTGCTGCATTTAATTATCTTCGGTCTTTGTTGCAGCAAGGCCAAAGAGGAATTCAAGAAGTGATTCAGAATTTCGAGAAAGTAATGAAGTTGTTTTTCCAACACTTGGATGATCCGCACCACAAAGTTGCACAAGCAGCCCTTTCAACACTTGCAGACATTATTCCATCATGCCGTAAGCCCTTTGAAAGTTACATGGAAAGGATCCTACCTCATGTTTTCTCACGGTTAATTGACCCAAAGGAGTTAGTTAGGCAACCTTGCTCAACAACTTTGGCTATTGTTGGCAAGACTTACAGTGTAGATTCCCTGTTACCTGCTTTGCTTCGTTCACTAGATGAACAGAGGTCACCAAAGGCCAAATTAGCTGTTATTGAGTTTTCTATCGGTTCATTTAACAAGCATTCAGTGAATGCTGAAGGTTCTGGTAATAGTGGCATCCTAAAATTATGGCTTTCGAAGTTGACACCATTGGTCCATGATAAAAACACTAAACTAAAGGAGGCAGCTATTACATGCATAATCTCTGTATACTCCCACTTTGATCCAACAGCTGTCTTGAATTTTATTCTTAGCTTGTCAGTTGAAGAACAAAATTCATTGAGAAGAGCCTTGAAACAAAGTACTCCTCGCATTGAAGTGGACCTTATGAACTTTTTGCAAAACAAGAAAGAGCGACAGCGCAAGTCTTCTTATGATCCGTCTGATGCAGTTGGAACATCTTCCGAAGAAGGATATGTTAGTGCCTCAAAGAAGAGTCATTTCTTTGGGAGGTATTCTGCTGGTTCAGTTGATAGTGATGGTGGCAGGAAGTGGAGTTCAACCCAAGAAACAGCCTTGGTGACTGGCTCGGTTGGCCAAGCAGCTTCTGATCAGACTGGGGAAAACTTGTATCAGAATTTTGAGACTGGTTCTAACATTGATGTTCTCAATGCAAAATCCAAGGATCCAACTTACATGGTCAGTGCCATGAATCAGAGCTCTGGTTCCTGGACTAGCCCTCTGGACAATGGCGAAGGTAGAGTAAATTTAGAAGGTTTGCATACTCATTCCCTGGATGTTAATGGGGTTTTGAACTCGGACCATATTGGGGCTGCTGAGAGCATTGGGCATAGTGAAGCTTCCACCGACTTGGACCAGAATCACCACCAACTTAAAGCTTTAAAGGTTAATTCCATTCCAGACTCAGGTCCCAGCATTCCTCAGATACTCCACCTGATTAGCACTGGAACTGAGGAAAGTCCTGCAGAAAGTAAGCGTGGTGCACTTCAACAGCTAATTGAAGCTTCTAAAACTAATGACCACTCTATCTGGACCAAGTACTTCAATCAAATTTTGACAGTTGTACTTGAGGTGTTGGATGATTTTGACTCCTCCATCCGGGAGCTCTCTCTTTCATTGATTATTGAAATGCTTAAGAACCAGAAAGCTGCAATGGAAGATTCTATTGAGATCGTGATTGAGAAGCTGCTGCATGTTACAAAGGACTTAGTTCCCCAGGTTTCAAATGAATCAGAGCACTGCTTGAGTATTGTTCTGTCGCAGTATGATCCATTCAGATGTTTAAGTGTATGTATCCATTTCAGTTCCCTCCCAGCCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

1312

Amino Acids

145.46

Weight (kDa)

6.99

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CEP104-like_TOG	PF21040	10 - 180	9.4e-10	Centrosomal protein CEP104-like, TOG domain
XMAP215_CLASP_TOG	PF21041	11 - 213	3.3e-09	XMAP215/Dis1/CLASP, TOG domain
HEAT_GCN1_C	PF25786	18 - 116	2.8e-06	GCN1-like, C-terminal HEAT repeats
CLASP_N	PF12348	280 - 496	3e-48	CLASP N terminal
CLASP_N	PF12348	768 - 959	2e-09	CLASP N terminal
CEP104-like_TOG	PF21040	772 - 916	4.3e-08	Centrosomal protein CEP104-like, TOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	356, 2659
AccB1I	GGYRCC	1 cut(s)	600
AccB7I	CCANNNNNTGG	1 cut(s)	2440
AccBSI	CCGCTC	1 cut(s)	776
AccI	GTMKAC	3 cut(s)	560, 804, 2865
AccII	CGCG	2 cut(s)	27, 297
AcoI	YGGCCR	4 cut(s)	51, 108, 1430, 3190
AcsI	RAATTY	9 cut(s)	1911, 2158, 2385, 2404, 2896, 2929, 3232, 3361, 3666
AcuI	CTGAAG	6 cut(s)	170, 452, 578, 1650, 2301, 2772
AfaI	GTAC	7 cut(s)	873, 1140, 1549, 1708, 2959, 3656, 3681
AfeI	AGCGCT	1 cut(s)	12
AfiI	CCNNNNNNNGG	8 cut(s)	106, 525, 1601, 2026, 2440, 3424, 3521, 3714
AflII	CTTAAG	2 cut(s)	2176, 3749
AgeI	ACCGGT	1 cut(s)	1552
AjnI	CCWGG	9 cut(s)	89, 174, 377, 1427, 1594, 1884, 3323, 3387, 3831
AjuI	GAANNNNNNNTTGG	4 cut(s)	1055, 1087, 2370, 2402
AloI	GAACNNNNNNTCC	2 cut(s)	3136, 3168
Alw21I	GWGCWC	5 cut(s)	1212, 3317, 3601, 3723, 3855
Alw26I	GTCTC	3 cut(s)	175, 1561, 3233
Alw44I	GTGCAC	1 cut(s)	3597
AlwNI	CAGNNNCTG	2 cut(s)	1157, 3203
Ama87I	CYCGRG	1 cut(s)	1203
Aor51HI	AGCGCT	1 cut(s)	12
ApaLI	GTGCAC	1 cut(s)	3597
ApoI	RAATTY	9 cut(s)	1911, 2158, 2385, 2404, 2896, 2929, 3232, 3361, 3666
ArsI	GACNNNNNNTTYG	2 cut(s)	1737, 1769
AseI	ATTAAT	1 cut(s)	633
AsiGI	ACCGGT	1 cut(s)	1552
Asp700I	GAANNNNTTC	3 cut(s)	1417, 2397, 3055
AspLEI	GCGC	8 cut(s)	13, 29, 48, 66, 124, 247, 270, 3018
AsuC2I	CCSGG	3 cut(s)	307, 519, 3716
AsuHPI	GGTGA	5 cut(s)	418, 634, 2676, 3187, 3470
AsuII	TTCGAA	1 cut(s)	2792
AvaI	CYCGRG	1 cut(s)	1203
AvaII	GGWCC	8 cut(s)	1384, 2270, 2809, 2977, 3415, 3469, 3524, 3648
BaeGI	GKGCMC	2 cut(s)	385, 3601
BaeI	ACNNNNGTAYC	6 cut(s)	855, 888, 1280, 1313, 1539, 1572
BalI	TGGCCA	1 cut(s)	3192
BamHI	GGATCC	2 cut(s)	2538, 3280
BanI	GGYRCC	1 cut(s)	600
BanII	GRGCYC	3 cut(s)	182, 3317, 3723
BbsI	GAAGAC	2 cut(s)	330, 3015
Bbv12I	GWGCWC	5 cut(s)	1212, 3317, 3601, 3723, 3855
BbvCI	CCTCAGC	1 cut(s)	430
BceAI	ACGGC	3 cut(s)	191, 242, 2493
BcgI	CGANNNNNNTGC	4 cut(s)	101, 135, 1248, 1282
BciT130I	CCWGG	9 cut(s)	91, 176, 379, 1429, 1596, 1886, 3325, 3389, 3833
BciVI	GTATCC	2 cut(s)	1500, 3920
BclI	TGATCA	2 cut(s)	1131, 3205
BcnI	CCSGG	3 cut(s)	307, 519, 3716
BcoDI	GTCTC	3 cut(s)	175, 1561, 3233
BfaI	CTAG	8 cut(s)	644, 1020, 1827, 1838, 2064, 2331, 2669, 3330
BfmI	CTRYAG	8 cut(s)	494, 690, 801, 1158, 1408, 2190, 2205, 3579
BfoI	RGCGCY	3 cut(s)	14, 67, 271
BfrI	CTTAAG	2 cut(s)	2176, 3749
BfuAI	ACCTGC	2 cut(s)	356, 2659
BfuI	GTATCC	2 cut(s)	1500, 3920
BglII	AGATCT	1 cut(s)	1345
BmcAI	AGTACT	2 cut(s)	2959, 3656
Bme18I	GGWCC	8 cut(s)	1384, 2270, 2809, 2977, 3415, 3469, 3524, 3648
BmeT110I	CYCGRG	1 cut(s)	1203
BmiI	GGNNCC	7 cut(s)	314, 602, 2171, 2540, 3282, 3322, 3526
BmrI	ACTGGG	1 cut(s)	3222
BmsI	GCATC	7 cut(s)	268, 458, 1360, 2278, 2285, 2781, 3031
BmuI	ACTGGG	1 cut(s)	3222
BoxI	GACNNNNGTC	1 cut(s)	3522
BpiI	GAAGAC	2 cut(s)	330, 3015
BpmI	CTGGAG	1 cut(s)	1313
Bpu10I	CCTNAGC	1 cut(s)	430
Bpu14I	TTCGAA	1 cut(s)	2792
BpuEI	CTTGAG	6 cut(s)	134, 212, 727, 736, 3704, 3880
BpuMI	CCSGG	3 cut(s)	307, 519, 3716
BsaBI	GATNNNNATC	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	1561
BsaWI	WCCGGW	2 cut(s)	1552, 1818
BsaXI	ACNNNNNCTCC	2 cut(s)	2206, 2236
Bsc4I	CCNNNNNNNGG	8 cut(s)	106, 525, 1601, 2026, 2440, 3424, 3521, 3714
Bse118I	RCCGGY	1 cut(s)	1552
Bse1I	ACTGG	8 cut(s)	890, 1109, 1296, 2327, 3184, 3217, 3247, 3565
Bse3DI	GCAATG	5 cut(s)	912, 1380, 1629, 1882, 3774
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	9 cut(s)	91, 176, 379, 1429, 1596, 1886, 3325, 3389, 3833
BseGI	GGATG	8 cut(s)	1504, 1985, 2125, 2449, 2772, 3397, 3700, 3711
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	8 cut(s)	106, 525, 1601, 2026, 2440, 3424, 3521, 3714
BseMI	GCAATG	5 cut(s)	912, 1380, 1629, 1882, 3774
BseMII	CTCAG	8 cut(s)	444, 590, 1701, 2001, 3423, 3534, 3551, 3558
BseNI	ACTGG	8 cut(s)	890, 1109, 1296, 2327, 3184, 3217, 3247, 3565
BseRI	GAGGAG	5 cut(s)	422, 566, 2230, 2952, 3697
BseSI	GKGCMC	2 cut(s)	385, 3601
BseX3I	CGGCCG	1 cut(s)	108
BseYI	CCCAGC	3 cut(s)	1569, 3527, 3928
Bsh1236I	CGCG	2 cut(s)	27, 297
Bsh1285I	CGRYCG	1 cut(s)	111
BshNI	GGYRCC	1 cut(s)	600
BshTI	ACCGGT	1 cut(s)	1552
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	5 cut(s)	1212, 3317, 3601, 3723, 3855
BsiHKCI	CYCGRG	1 cut(s)	1203
BsiSI	CCGG	8 cut(s)	54, 216, 307, 519, 1433, 1553, 1819, 3715
BslFI	GGGAC	6 cut(s)	236, 542, 586, 978, 1666, 3510
BslI	CCNNNNNNNGG	8 cut(s)	106, 525, 1601, 2026, 2440, 3424, 3521, 3714
BsmAI	GTCTC	3 cut(s)	175, 1561, 3233
BsmFI	GGGAC	6 cut(s)	236, 542, 586, 978, 1666, 3510
BsmI	GAATGC	4 cut(s)	2191, 2737, 2752, 3531
Bso31I	GGTCTC	1 cut(s)	1561
BsoBI	CYCGRG	1 cut(s)	1203
Bsp119I	TTCGAA	1 cut(s)	2792
Bsp1286I	GDGCHC	7 cut(s)	182, 385, 1212, 3317, 3601, 3723, 3855
Bsp19I	CCATGG	1 cut(s)	618
Bsp68I	TCGCGA	1 cut(s)	297
BspCNI	CTCAG	8 cut(s)	443, 589, 1702, 2002, 3424, 3533, 3550, 3559
BspFNI	CGCG	2 cut(s)	27, 297
BspLI	GGNNCC	7 cut(s)	314, 602, 2171, 2540, 3282, 3322, 3526
BspMAI	CTGCAG	4 cut(s)	498, 1162, 2209, 3583
BspMI	ACCTGC	2 cut(s)	356, 2659
BspQI	GCTCTTC	2 cut(s)	89, 2935
BspT104I	TTCGAA	1 cut(s)	2792
BspT107I	GGYRCC	1 cut(s)	600
BspTI	CTTAAG	2 cut(s)	2176, 3749
BspTNI	GGTCTC	1 cut(s)	1561
BsrBI	CCGCTC	1 cut(s)	776
BsrDI	GCAATG	5 cut(s)	912, 1380, 1629, 1882, 3774
BsrFI	RCCGGY	1 cut(s)	1552
BsrI	ACTGG	8 cut(s)	890, 1109, 1296, 2327, 3184, 3217, 3247, 3565
BssAI	RCCGGY	1 cut(s)	1552
BssNAI	GTATAC	2 cut(s)	561, 2866
BssT1I	CCWWGG	5 cut(s)	30, 39, 618, 3171, 3276
Bst1107I	GTATAC	2 cut(s)	561, 2866
Bst2UI	CCWGG	9 cut(s)	91, 176, 379, 1429, 1596, 1886, 3325, 3389, 3833
Bst6I	CTCTTC	8 cut(s)	89, 189, 471, 1488, 1669, 2034, 2935, 3083
BstAFI	CTTAAG	2 cut(s)	2176, 3749
BstAPI	GCANNNNNTGC	1 cut(s)	1157
BstBI	TTCGAA	1 cut(s)	2792
BstC8I	GCNNGC	9 cut(s)	25, 474, 567, 1035, 1039, 1737, 1741, 1772, 2209
BstDSI	CCRYGG	1 cut(s)	618
BstEII	GGTNACC	1 cut(s)	2682
BstF5I	GGATG	8 cut(s)	1504, 1985, 2125, 2449, 2772, 3397, 3700, 3711
BstFNI	CGCG	2 cut(s)	27, 297
BstH2I	RGCGCY	3 cut(s)	14, 67, 271
BstHHI	GCGC	8 cut(s)	13, 29, 48, 66, 124, 247, 270, 3018
BstMAI	GTCTC	3 cut(s)	175, 1561, 3233
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	9 cut(s)	203, 1157, 1229, 1619, 1881, 2336, 2471, 2699, 3189
BstNI	CCWGG	9 cut(s)	91, 176, 379, 1429, 1596, 1886, 3325, 3389, 3833
BstNSI	RCATGY	5 cut(s)	1523, 1739, 1774, 2853, 3812
BstPAI	GACNNNNGTC	1 cut(s)	3522
BstPI	GGTNACC	1 cut(s)	2682
BstSFI	CTRYAG	8 cut(s)	494, 690, 801, 1158, 1408, 2190, 2205, 3579
BstSLI	GKGCMC	2 cut(s)	385, 3601
BstUI	CGCG	2 cut(s)	27, 297
BstV2I	GAAGAC	2 cut(s)	330, 3015
BstX2I	RGATCY	5 cut(s)	142, 1345, 1834, 2538, 3280
BstXI	CCANNNNNNTGG	2 cut(s)	619, 3466
BstYI	RGATCY	5 cut(s)	142, 1345, 1834, 2538, 3280
BstZ17I	GTATAC	2 cut(s)	561, 2866
BstZI	CGGCCG	1 cut(s)	108
BsuI	GTATCC	2 cut(s)	1500, 3920
BtgI	CCRYGG	1 cut(s)	618
BtgZI	GCGATG	2 cut(s)	291, 2262
BtsCI	GGATG	8 cut(s)	1504, 1985, 2125, 2449, 2772, 3397, 3700, 3711
BtsI	GCAGTG	3 cut(s)	117, 1970, 3853
BtuMI	TCGCGA	1 cut(s)	297
BveI	ACCTGC	2 cut(s)	356, 2659
Cac8I	GCNNGC	9 cut(s)	25, 474, 567, 1035, 1039, 1737, 1741, 1772, 2209
CaiI	CAGNNNCTG	2 cut(s)	1157, 3203
CfoI	GCGC	8 cut(s)	13, 29, 48, 66, 124, 247, 270, 3018
Cfr10I	RCCGGY	1 cut(s)	1552
CseI	GACGC	2 cut(s)	308, 539
Csp6I	GTAC	7 cut(s)	872, 1139, 1548, 1707, 2958, 3655, 3680
CspAI	ACCGGT	1 cut(s)	1552
CviQI	GTAC	7 cut(s)	872, 1139, 1548, 1707, 2958, 3655, 3680
DraI	TTTAAA	1 cut(s)	3498
EaeI	YGGCCR	4 cut(s)	51, 108, 1430, 3190
EagI	CGGCCG	1 cut(s)	108
Eam1104I	CTCTTC	8 cut(s)	89, 189, 471, 1488, 1669, 2034, 2935, 3083
EarI	CTCTTC	8 cut(s)	89, 189, 471, 1488, 1669, 2034, 2935, 3083
EciI	GGCGGA	1 cut(s)	190
Ecl136II	GAGCTC	2 cut(s)	3315, 3721
EclXI	CGGCCG	1 cut(s)	108
Eco130I	CCWWGG	5 cut(s)	30, 39, 618, 3171, 3276
Eco24I	GRGCYC	3 cut(s)	182, 3317, 3723
Eco31I	GGTCTC	1 cut(s)	1561
Eco32I	GATATC	2 cut(s)	1900, 2202
Eco47I	GGWCC	8 cut(s)	1384, 2270, 2809, 2977, 3415, 3469, 3524, 3648
Eco47III	AGCGCT	1 cut(s)	12
Eco52I	CGGCCG	1 cut(s)	108
Eco53kI	GAGCTC	2 cut(s)	3315, 3721
Eco57I	CTGAAG	6 cut(s)	170, 452, 578, 1650, 2301, 2772
Eco88I	CYCGRG	1 cut(s)	1203
Eco91I	GGTNACC	1 cut(s)	2682
EcoICRI	GAGCTC	2 cut(s)	3315, 3721
EcoO109I	RGGNCCY	3 cut(s)	190, 2169, 3524
EcoO65I	GGTNACC	1 cut(s)	2682
EcoRI	GAATTC	1 cut(s)	2385
EcoRII	CCWGG	9 cut(s)	89, 174, 377, 1427, 1594, 1884, 3323, 3387, 3831
EcoRV	GATATC	2 cut(s)	1900, 2202
EcoT14I	CCWWGG	5 cut(s)	30, 39, 618, 3171, 3276
EcoT22I	ATGCAT	1 cut(s)	2855
EcoT38I	GRGCYC	3 cut(s)	182, 3317, 3723
ErhI	CCWWGG	5 cut(s)	30, 39, 618, 3171, 3276
FalI	AAGNNNNNCTT	6 cut(s)	2299, 2331, 2460, 2492, 2964, 2996
FaqI	GGGAC	6 cut(s)	236, 542, 586, 978, 1666, 3510
FauI	CCCGC	1 cut(s)	262
FauNDI	CATATG	1 cut(s)	1090
FbaI	TGATCA	2 cut(s)	1131, 3205
FblI	GTMKAC	3 cut(s)	560, 804, 2865
FokI	GGATG	8 cut(s)	1511, 1972, 2132, 2456, 2759, 3404, 3698, 3707
FriOI	GRGCYC	3 cut(s)	182, 3317, 3723
FspBI	CTAG	8 cut(s)	644, 1020, 1827, 1838, 2064, 2331, 2669, 3330
GlaI	GCGC	8 cut(s)	12, 28, 47, 65, 123, 246, 269, 3017
GsaI	CCCAGC	3 cut(s)	1573, 3531, 3932
GsuI	CTGGAG	1 cut(s)	1313
HaeII	RGCGCY	3 cut(s)	14, 67, 271
HapII	CCGG	8 cut(s)	54, 216, 307, 519, 1433, 1553, 1819, 3715
HgaI	GACGC	2 cut(s)	308, 539
HhaI	GCGC	8 cut(s)	13, 29, 48, 66, 124, 247, 270, 3018
Hin6I	GCGC	8 cut(s)	11, 27, 46, 64, 122, 245, 268, 3016
HinP1I	GCGC	8 cut(s)	11, 27, 46, 64, 122, 245, 268, 3016
HincII	GTYRAC	1 cut(s)	2799
HindII	GTYRAC	1 cut(s)	2799
HindIII	AAGCTT	6 cut(s)	84, 230, 1917, 3453, 3492, 3618
HpaII	CCGG	8 cut(s)	54, 216, 307, 519, 1433, 1553, 1819, 3715
HphI	GGTGA	5 cut(s)	418, 634, 2676, 3187, 3470
Hpy166II	GTNNAC	8 cut(s)	561, 805, 1550, 2666, 2799, 2866, 2977, 3599
Hpy8I	GTNNAC	8 cut(s)	561, 805, 1550, 2666, 2799, 2866, 2977, 3599
Hpy99I	CGWCG	5 cut(s)	131, 263, 266, 302, 1449
HpyF10VI	GCNNNNNNNGC	9 cut(s)	203, 1157, 1229, 1619, 1881, 2336, 2471, 2699, 3189
HspAI	GCGC	8 cut(s)	11, 27, 46, 64, 122, 245, 268, 3016
Ksp22I	TGATCA	2 cut(s)	1131, 3205
LguI	GCTCTTC	2 cut(s)	89, 2935
LmnI	GCTCC	8 cut(s)	43, 61, 318, 773, 1066, 1215, 1435, 3718
LweI	GCATC	7 cut(s)	268, 458, 1360, 2278, 2285, 2781, 3031
MaeI	CTAG	8 cut(s)	644, 1020, 1827, 1838, 2064, 2331, 2669, 3330
MbiI	CCGCTC	1 cut(s)	776
MfeI	CAATTG	2 cut(s)	435, 1761
MflI	RGATCY	5 cut(s)	142, 1345, 1834, 2538, 3280
MhlI	GDGCHC	7 cut(s)	182, 385, 1212, 3317, 3601, 3723, 3855
MlsI	TGGCCA	1 cut(s)	3192
MluNI	TGGCCA	1 cut(s)	3192
MlyI	GAGTC	6 cut(s)	177, 568, 1163, 3100, 3512, 3698
MmeI	TCCRAC	8 cut(s)	368, 374, 812, 2458, 2906, 3028, 3308, 3672
Mox20I	TGGCCA	1 cut(s)	3192
Mph1103I	ATGCAT	1 cut(s)	2855
MroXI	GAANNNNTTC	3 cut(s)	1417, 2397, 3055
MscI	TGGCCA	1 cut(s)	3192
MslI	CAYNNNNRTG	6 cut(s)	240, 617, 2118, 2442, 2972, 3892
Msp20I	TGGCCA	1 cut(s)	3192
MspA1I	CMGCKG	3 cut(s)	598, 1964, 2888
MspCI	CTTAAG	2 cut(s)	2176, 3749
MspI	CCGG	8 cut(s)	54, 216, 307, 519, 1433, 1553, 1819, 3715
MunI	CAATTG	2 cut(s)	435, 1761
Mva1269I	GAATGC	4 cut(s)	2191, 2737, 2752, 3531
MvaI	CCWGG	9 cut(s)	91, 176, 379, 1429, 1596, 1886, 3325, 3389, 3833
MvnI	CGCG	2 cut(s)	27, 297
MwoI	GCNNNNNNNGC	9 cut(s)	203, 1157, 1229, 1619, 1881, 2336, 2471, 2699, 3189
NciI	CCSGG	3 cut(s)	307, 519, 3716
NcoI	CCATGG	1 cut(s)	618
NdeI	CATATG	1 cut(s)	1090
NlaIV	GGNNCC	7 cut(s)	314, 602, 2171, 2540, 3282, 3322, 3526
NmeAIII	GCCGAG	2 cut(s)	136, 252
NmuCI	GTSAC	7 cut(s)	115, 424, 1271, 1680, 1692, 2682, 3175
NruI	TCGCGA	1 cut(s)	297
NsiI	ATGCAT	1 cut(s)	2855
NspI	RCATGY	5 cut(s)	1523, 1739, 1774, 2853, 3812
NspV	TTCGAA	1 cut(s)	2792
PaeI	GCATGC	2 cut(s)	1739, 1774
PasI	CCCWGGG	1 cut(s)	175
PciSI	GCTCTTC	2 cut(s)	89, 2935
PctI	GAATGC	4 cut(s)	2191, 2737, 2752, 3531
PdmI	GAANNNNTTC	3 cut(s)	1417, 2397, 3055
PflMI	CCANNNNNTGG	1 cut(s)	2440
PfoI	TCCNGGA	3 cut(s)	89, 3323, 3714
PinAI	ACCGGT	1 cut(s)	1552
PleI	GAGTC	6 cut(s)	176, 568, 1162, 3099, 3512, 3698
PpsI	GAGTC	6 cut(s)	176, 568, 1162, 3099, 3512, 3698
PpuMI	RGGWCCY	1 cut(s)	3524
PshAI	GACNNNNGTC	1 cut(s)	3522
PshBI	ATTAAT	1 cut(s)	633
Psp124BI	GAGCTC	2 cut(s)	3317, 3723
Psp5II	RGGWCCY	1 cut(s)	3524
Psp6I	CCWGG	9 cut(s)	89, 174, 377, 1427, 1594, 1884, 3323, 3387, 3831
PspEI	GGTNACC	1 cut(s)	2682
PspFI	CCCAGC	3 cut(s)	1569, 3527, 3928
PspGI	CCWGG	9 cut(s)	89, 174, 377, 1427, 1594, 1884, 3323, 3387, 3831
PspN4I	GGNNCC	7 cut(s)	314, 602, 2171, 2540, 3282, 3322, 3526
PspPPI	RGGWCCY	1 cut(s)	3524
PsrI	GAACNNNNNNTAC	2 cut(s)	1302, 1334
PstI	CTGCAG	4 cut(s)	498, 1162, 2209, 3583
PstNI	CAGNNNCTG	2 cut(s)	1157, 3203
PsuI	RGATCY	5 cut(s)	142, 1345, 1834, 2538, 3280
PvuII	CAGCTG	2 cut(s)	1964, 2888
RruI	TCGCGA	1 cut(s)	297
RsaI	GTAC	7 cut(s)	873, 1140, 1549, 1708, 2959, 3656, 3681
RsaNI	GTAC	7 cut(s)	872, 1139, 1548, 1707, 2958, 3655, 3680
RseI	CAYNNNNRTG	6 cut(s)	240, 617, 2118, 2442, 2972, 3892
SacI	GAGCTC	2 cut(s)	3317, 3723
SapI	GCTCTTC	2 cut(s)	89, 2935
ScaI	AGTACT	2 cut(s)	2959, 3656
SchI	GAGTC	6 cut(s)	177, 568, 1163, 3100, 3512, 3698
SduI	GDGCHC	7 cut(s)	182, 385, 1212, 3317, 3601, 3723, 3855
SfaNI	GCATC	7 cut(s)	268, 458, 1360, 2278, 2285, 2781, 3031
SfcI	CTRYAG	8 cut(s)	494, 690, 801, 1158, 1408, 2190, 2205, 3579
SfuI	TTCGAA	1 cut(s)	2792
SinI	GGWCC	8 cut(s)	1384, 2270, 2809, 2977, 3415, 3469, 3524, 3648
SmiMI	CAYNNNNRTG	6 cut(s)	240, 617, 2118, 2442, 2972, 3892
SmlI	CTYRAG	8 cut(s)	149, 227, 706, 751, 2176, 3683, 3749, 3859
SmoI	CTYRAG	8 cut(s)	149, 227, 706, 751, 2176, 3683, 3749, 3859
SphI	GCATGC	2 cut(s)	1739, 1774
SspMI	CTAG	8 cut(s)	644, 1020, 1827, 1838, 2064, 2331, 2669, 3330
SstI	GAGCTC	2 cut(s)	3317, 3723
StyI	CCWWGG	5 cut(s)	30, 39, 618, 3171, 3276
TaqI	TCGA	8 cut(s)	81, 129, 264, 1012, 1061, 1258, 2409, 2792
TaqII	GACCGA	1 cut(s)	2346
TatI	WGTACW	4 cut(s)	1138, 2957, 3654, 3679
TauI	GCSGC	2 cut(s)	206, 601
TseFI	GTSAC	7 cut(s)	115, 424, 1271, 1680, 1692, 2682, 3175
Tsp45I	GTSAC	7 cut(s)	115, 424, 1271, 1680, 1692, 2682, 3175
TspGWI	ACGGA	3 cut(s)	572, 1376, 3024
Van91I	CCANNNNNTGG	1 cut(s)	2440
Vha464I	CTTAAG	2 cut(s)	2176, 3749
VneI	GTGCAC	1 cut(s)	3597
VpaK11BI	GGWCC	8 cut(s)	1384, 2270, 2809, 2977, 3415, 3469, 3524, 3648
VspI	ATTAAT	1 cut(s)	633
XapI	RAATTY	9 cut(s)	1911, 2158, 2385, 2404, 2896, 2929, 3232, 3361, 3666
XbaI	TCTAGA	1 cut(s)	1837
XceI	RCATGY	5 cut(s)	1523, 1739, 1774, 2853, 3812
XcmI	CCANNNNNNNNNTGG	2 cut(s)	46, 882
XmiI	GTMKAC	3 cut(s)	560, 804, 2865
XmnI	GAANNNNTTC	3 cut(s)	1417, 2397, 3055
XspI	CTAG	8 cut(s)	644, 1020, 1827, 1838, 2064, 2331, 2669, 3330
ZrmI	AGTACT	2 cut(s)	2959, 3656
Zsp2I	ATGCAT	1 cut(s)	2855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.