Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Forward (+)

22079845 .. 22089948

Gene Structure 10104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00183030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2403 bp

ATGACAGATTCAACCACCTCAAGTAACAAAGGTAGTAACCGCAATGGTGGCCTGGTTTTGTCTGATATCATTACGCAAATTCAGGCTTCCAAAGATTCTGCTAAATCATCATATCGCAGTAATTTATCAGCTGAAACACTGCCAACTGTTTCATCCTACAACATAAAGAGGGCTTCTGAGAGAATCCACGAAAGGGGTTTCATTGAAGAGAATACTGACAGTAGGGAGGCTAGGCGAACTATGAATCATCAAGCTGACAGGCATTATTTGGACACATCTCACAGGGATGGAAACTTTAGGGATTCACATAATAACCATATCCCCAATTTTCAAAGGCCCCTCTTAAGAAAGAATGCTACAGGAAGGATATCTGCAGGCAGGAGGAGAAGTTTTGATGATAGCCAGCTCTCACAGGAGATGGCAAATTATGTAGAAGGTCCAGCATCGCTAAATGATGCTCTGAGTGAAGGACTAAGTTCATCTTCAGACTGGTCAGCTAGGGTTGCTGCATTTAATTATCTTCGGTCTTTGTTGCAGCAAGGCCAAAGAGGAATTCAAGAAGTGATTCAGAATTTCGAGAAAGTAATGAAGTTGTTTTTCCAACACTTAGATGATCCGCACCACAAAGTTGCACAAGCAGCCCTTTCAACACTTGCTGACATTATTCCATCATGCCGTAAGCCCTTTGAAAGTTACATGGAAAGGATCCTACCTCATGTTTTCTCACGGTTAATTGACCCAAAGGAGTTAGTTAGGCAACCTTGCTCAACAACTTTGGTCATCGTTGGCAAGACTTACAGTGTAGATTCCCTGTTACCTGCTTTGCTTCGTTCACTAGATGAACAGAGGTCACCAAAGGCTAAATTAGCTGTTATTGAGTTCTCTATCGGTTCATTTAACAAGCATTCAGTGAATGCTGAAGGTTCTGGTAATAGTGGCATCCTAAAATTATGGCTTTCGAAGTTGACACCATTGGTCCATGATAAAAACACTAAACTAAAGGAGGCAGCTATTACATGCATAATCTCTGTATACTCCCACTTTGATCCAACAGCTGTCTTGAATTTTATTCTTAGCTTGTCAGTTGAAGAACAAAATTCGTTGAGAAGAGCCTTGAAACAAAGTACTCCTCGCATCGAAGTGGACCTTATGAATTTTTTGCAAAACAAGAAAGAGCGACAGCGCAAGTCTTCTTATGATCCGTCTGATGCAGTTGGAACATCTTCCGAAGAAGGATATGTTAGTGCCTCAAAGAAGAGTCATTTCTTTGGGAGGTATTCTGCTGGTTCAGTTGATAGTGATGGTGGCAGGAAGTGGAGTTCAACCCAAGAAACATCCTTGGTCACTGGCTCGGTTGGCCAAGCAGCTTCTGATCAGACTGGGGAAAACTTGTATCAGAATTTGGAGACTGGTTCTAACATTGATGTTCTCAATGCAAAATCCAAGGATCCAACTTACATGATCAGTGCCATGAATCAGAGCTCTGGTTCCTGGACTAGCCCTCTGGACAATGGCGAAGGTAGAGTAAATTTAGAAAGTTTGCATACTCATTCCCTGGATGTTAATGGGGTTTTGAACTTGGACCATATTGGGGCTGCTGAGAGCATTGGGCATAGTGAAGCTTCCACCGACTTGGACCAGAATCACCACCAACTTAAAGCTTTAAAGGTTAATTCCATTCCAGACTCGGGTCCCAGCATTCCTCAGATACTCCACCTGATTAGCACTGGAACTGAGGAAAGTCCTGCAGAAAGTAAGCGTGGTGCACTTCAACAGCTAATCGAAGCTTCTAAAACTAATGACCACTCTATCTGGACCAAGTACTTCAATCAAATTTTGACAGTTGTACTTGAGGTGTTGGATGATTTTGACTCCTCCATCCGGGAGCTCTCTCTTTCATTGATTATTGAAATGCTTAAGAACCAGAAAGCTGCAATGGAAGATTCTATTGAGATCGTAATTGAGAAGCTGCTGCATGTTACAAAGGACTTAGTTCCCCAGGTTTCAAATGAATCAGAGCACTGCTTGAGTATTGTTCTGTCGCAGTATGATCCATTCAGATGTTTAAGTGTCATTGTCCCTTTATTGGTAACTGAAGATGAGAAAACTCTTGTTACTTGCATAAATTGTTTGACAAAGCTTGTAGGCAGGCTTTCACAGGAGGAACTAATGGCTCAATTACCATCTTTTTTGCCTCCACTGTTCGAAGCGTTTGGAAACCAGAGTGCCGATGTTCGCAAGACTGTTGTCTTCTGTTTAGTTGATATATATATCATGCTTGGGAAAGCATTCTTGCCATATCTGGAGGGGCTCAACAGCACACAGTTACGGTTGGTGACTATTTATGCTAATCGAATTTCACAGGCGAGGACAGGCATGCCAATAGACACTAACCATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

800

Amino Acids

88.75

Weight (kDa)

6.11

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLASP_N	PF12348	157 - 348	1.6e-09	CLASP N terminal
CEP104-like_TOG	PF21040	161 - 305	6e-09	Centrosomal protein CEP104-like, TOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	826
AccI	GTMKAC	1 cut(s)	1032
AciI	CCGC	2 cut(s)	40, 617
AclWI	GGATC	8 cut(s)	608, 700, 713, 1040, 1193, 1442, 1455, 2045
AcoI	YGGCCR	1 cut(s)	1357
AcuI	CTGAAG	3 cut(s)	468, 939, 2115
AfaI	GTAC	3 cut(s)	1126, 1823, 1848
AfiI	CCNNNNNNNGG	5 cut(s)	193, 1591, 1688, 1881, 2086
AflII	CTTAAG	2 cut(s)	343, 1916
AjnI	CCWGG	4 cut(s)	51, 1490, 1554, 1998
AjuI	GAANNNNNNNTTGG	2 cut(s)	537, 569
AloI	GAACNNNNNNTCC	2 cut(s)	1303, 1335
Alw21I	GWGCWC	4 cut(s)	1484, 1768, 1890, 2022
Alw26I	GTCTC	1 cut(s)	1400
Alw44I	GTGCAC	1 cut(s)	1764
AlwI	GGATC	8 cut(s)	608, 700, 713, 1040, 1193, 1442, 1455, 2045
AlwNI	CAGNNNCTG	1 cut(s)	1370
Ama87I	CYCGRG	1 cut(s)	1687
AoxI	GGCC	4 cut(s)	49, 335, 541, 1357
ApaLI	GTGCAC	1 cut(s)	1764
ApeKI	GCWGC	9 cut(s)	506, 535, 638, 1007, 1364, 1595, 1931, 1969, 1972
Asp700I	GAANNNNTTC	3 cut(s)	564, 1222, 2288
AspLEI	GCGC	1 cut(s)	1185
AspS9I	GGNCC	8 cut(s)	336, 437, 976, 1144, 1582, 1636, 1691, 1815
AsuC2I	CCSGG	1 cut(s)	1883
AsuHPI	GGTGA	3 cut(s)	843, 1637, 2347
AsuII	TTCGAA	2 cut(s)	959, 2205
AvaI	CYCGRG	1 cut(s)	1687
AvaII	GGWCC	7 cut(s)	437, 976, 1144, 1582, 1636, 1691, 1815
BaeGI	GKGCMC	1 cut(s)	1768
BalI	TGGCCA	1 cut(s)	1359
BamHI	GGATCC	2 cut(s)	705, 1447
BanII	GRGCYC	3 cut(s)	1484, 1890, 2313
BbsI	GAAGAC	2 cut(s)	1182, 2242
Bbv12I	GWGCWC	4 cut(s)	1484, 1768, 1890, 2022
BbvI	GCAGC	9 cut(s)	493, 547, 650, 1019, 1376, 1582, 1918, 1956, 1959
BccI	CCATC	6 cut(s)	281, 412, 676, 1295, 1886, 2191
BceAI	ACGGC	1 cut(s)	660
BciT130I	CCWGG	4 cut(s)	53, 1492, 1556, 2000
BclI	TGATCA	2 cut(s)	1372, 1461
BcnI	CCSGG	1 cut(s)	1883
BcoDI	GTCTC	1 cut(s)	1400
BfaI	CTAG	4 cut(s)	231, 498, 836, 1497
BfmI	CTRYAG	3 cut(s)	357, 372, 1746
BfrI	CTTAAG	2 cut(s)	343, 1916
BfuAI	ACCTGC	1 cut(s)	826
BisI	GCNGC	9 cut(s)	507, 536, 639, 1008, 1365, 1596, 1932, 1970, 1973
BlsI	GCNGC	9 cut(s)	508, 537, 640, 1009, 1366, 1597, 1933, 1971, 1974
BmcAI	AGTACT	2 cut(s)	1126, 1823
Bme1390I	CCNGG	5 cut(s)	53, 1492, 1556, 1883, 2000
Bme18I	GGWCC	7 cut(s)	437, 976, 1144, 1582, 1636, 1691, 1815
BmeT110I	CYCGRG	1 cut(s)	1687
BmgT120I	GGNCC	8 cut(s)	336, 437, 976, 1144, 1582, 1636, 1691, 1815
BmiI	GGNNCC	6 cut(s)	338, 707, 1449, 1489, 1692, 1693
BmrFI	CCNGG	5 cut(s)	53, 1492, 1556, 1883, 2000
BmrI	ACTGGG	1 cut(s)	1389
BmsI	GCATC	5 cut(s)	445, 452, 948, 1143, 1198
BmuI	ACTGGG	1 cut(s)	1389
BoxI	GACNNNNGTC	2 cut(s)	1689, 2246
BpiI	GAAGAC	2 cut(s)	1182, 2242
BpmI	CTGGAG	1 cut(s)	2324
Bpu14I	TTCGAA	2 cut(s)	959, 2205
BpuEI	CTTGAG	3 cut(s)	4, 1871, 2047
BpuMI	CCSGG	1 cut(s)	1883
BsaJI	CCNNGG	4 cut(s)	1338, 1443, 1554, 1998
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	5 cut(s)	193, 1591, 1688, 1881, 2086
Bse1I	ACTGG	5 cut(s)	494, 1351, 1384, 1414, 1732
Bse3DI	GCAATG	2 cut(s)	49, 1941
BseBI	CCWGG	4 cut(s)	53, 1492, 1556, 2000
BseDI	CCNNGG	4 cut(s)	1338, 1443, 1554, 1998
BseGI	GGATG	7 cut(s)	152, 292, 939, 1334, 1564, 1867, 1878
BseLI	CCNNNNNNNGG	5 cut(s)	193, 1591, 1688, 1881, 2086
BseMI	GCAATG	2 cut(s)	49, 1941
BseMII	CTCAG	5 cut(s)	168, 452, 1590, 1718, 1725
BseNI	ACTGG	5 cut(s)	494, 1351, 1384, 1414, 1732
BseRI	GAGGAG	3 cut(s)	397, 1119, 1864
BseSI	GKGCMC	1 cut(s)	1768
BseXI	GCAGC	9 cut(s)	493, 547, 650, 1019, 1376, 1582, 1918, 1956, 1959
BseYI	CCCAGC	1 cut(s)	1694
BshFI	GGCC	4 cut(s)	51, 337, 543, 1359
BsiHKAI	GWGCWC	4 cut(s)	1484, 1768, 1890, 2022
BsiHKCI	CYCGRG	1 cut(s)	1687
BsiSI	CCGG	1 cut(s)	1882
BslFI	GGGAC	2 cut(s)	1677, 2063
BslI	CCNNNNNNNGG	5 cut(s)	193, 1591, 1688, 1881, 2086
BsmAI	GTCTC	1 cut(s)	1400
BsmFI	GGGAC	2 cut(s)	1677, 2063
BsmI	GAATGC	5 cut(s)	358, 904, 919, 1698, 2288
BsnI	GGCC	4 cut(s)	51, 337, 543, 1359
BsoBI	CYCGRG	1 cut(s)	1687
Bsp119I	TTCGAA	2 cut(s)	959, 2205
Bsp1286I	GDGCHC	5 cut(s)	1484, 1768, 1890, 2022, 2313
Bsp143I	GATC	9 cut(s)	613, 705, 1045, 1198, 1372, 1447, 1461, 1953, 2050
BspACI	CCGC	2 cut(s)	40, 617
BspANI	GGCC	4 cut(s)	51, 337, 543, 1359
BspCNI	CTCAG	5 cut(s)	169, 453, 1591, 1717, 1726
BspLI	GGNNCC	6 cut(s)	338, 707, 1449, 1489, 1692, 1693
BspMAI	CTGCAG	2 cut(s)	376, 1750
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	8 cut(s)	608, 700, 713, 1040, 1193, 1442, 1455, 2045
BspQI	GCTCTTC	1 cut(s)	1102
BspT104I	TTCGAA	2 cut(s)	959, 2205
BspTI	CTTAAG	2 cut(s)	343, 1916
BsrDI	GCAATG	2 cut(s)	49, 1941
BsrI	ACTGG	5 cut(s)	494, 1351, 1384, 1414, 1732
BssECI	CCNNGG	4 cut(s)	1338, 1443, 1554, 1998
BssMI	GATC	9 cut(s)	613, 705, 1045, 1198, 1372, 1447, 1461, 1953, 2050
BssNAI	GTATAC	1 cut(s)	1033
BssT1I	CCWWGG	2 cut(s)	1338, 1443
Bst1107I	GTATAC	1 cut(s)	1033
Bst2UI	CCWGG	4 cut(s)	53, 1492, 1556, 2000
Bst4CI	ACNGT	9 cut(s)	148, 221, 729, 800, 1843, 2202, 2245, 2325, 2331
Bst6I	CTCTTC	3 cut(s)	201, 1102, 1250
BstAFI	CTTAAG	2 cut(s)	343, 1916
BstBI	TTCGAA	2 cut(s)	959, 2205
BstC8I	GCNNGC	4 cut(s)	376, 404, 2150, 2378
BstDEI	CTNAG	9 cut(s)	177, 461, 473, 607, 1073, 1599, 1704, 1734, 1990
BstEII	GGTNACC	1 cut(s)	849
BstF5I	GGATG	7 cut(s)	152, 292, 939, 1334, 1564, 1867, 1878
BstHHI	GCGC	1 cut(s)	1185
BstKTI	GATC	9 cut(s)	616, 708, 1048, 1201, 1375, 1450, 1464, 1956, 2053
BstMAI	GTCTC	1 cut(s)	1400
BstMBI	GATC	9 cut(s)	613, 705, 1045, 1198, 1372, 1447, 1461, 1953, 2050
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 503, 638, 866, 1356
BstNI	CCWGG	4 cut(s)	53, 1492, 1556, 2000
BstNSI	RCATGY	3 cut(s)	1020, 1979, 2380
BstPAI	GACNNNNGTC	2 cut(s)	1689, 2246
BstPI	GGTNACC	1 cut(s)	849
BstSCI	CCNGG	5 cut(s)	51, 1490, 1554, 1881, 1998
BstSFI	CTRYAG	3 cut(s)	357, 372, 1746
BstSLI	GKGCMC	1 cut(s)	1768
BstV1I	GCAGC	9 cut(s)	493, 547, 650, 1019, 1376, 1582, 1918, 1956, 1959
BstV2I	GAAGAC	2 cut(s)	1182, 2242
BstX2I	RGATCY	2 cut(s)	705, 1447
BstXI	CCANNNNNNTGG	1 cut(s)	1633
BstYI	RGATCY	2 cut(s)	705, 1447
BstZ17I	GTATAC	1 cut(s)	1033
BsuRI	GGCC	4 cut(s)	51, 337, 543, 1359
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	7 cut(s)	152, 292, 939, 1334, 1564, 1867, 1878
BtsI	GCAGTG	2 cut(s)	137, 2020
BtsIMutI	CAGTG	8 cut(s)	137, 805, 915, 1344, 1471, 1725, 2020, 2198
BveI	ACCTGC	1 cut(s)	826
Cac8I	GCNNGC	4 cut(s)	376, 404, 2150, 2378
CaiI	CAGNNNCTG	1 cut(s)	1370
CfoI	GCGC	1 cut(s)	1185
Cfr13I	GGNCC	8 cut(s)	336, 437, 976, 1144, 1582, 1636, 1691, 1815
Csp6I	GTAC	3 cut(s)	1125, 1822, 1847
CviQI	GTAC	3 cut(s)	1125, 1822, 1847
DdeI	CTNAG	9 cut(s)	177, 461, 473, 607, 1073, 1599, 1704, 1734, 1990
DpnI	GATC	9 cut(s)	615, 707, 1047, 1200, 1374, 1449, 1463, 1955, 2052
DpnII	GATC	9 cut(s)	613, 705, 1045, 1198, 1372, 1447, 1461, 1953, 2050
DraI	TTTAAA	1 cut(s)	1665
EaeI	YGGCCR	1 cut(s)	1357
Eam1104I	CTCTTC	3 cut(s)	201, 1102, 1250
EarI	CTCTTC	3 cut(s)	201, 1102, 1250
Ecl136II	GAGCTC	2 cut(s)	1482, 1888
Eco130I	CCWWGG	2 cut(s)	1338, 1443
Eco24I	GRGCYC	3 cut(s)	1484, 1890, 2313
Eco32I	GATATC	2 cut(s)	67, 369
Eco47I	GGWCC	7 cut(s)	437, 976, 1144, 1582, 1636, 1691, 1815
Eco53kI	GAGCTC	2 cut(s)	1482, 1888
Eco57I	CTGAAG	3 cut(s)	468, 939, 2115
Eco88I	CYCGRG	1 cut(s)	1687
Eco91I	GGTNACC	1 cut(s)	849
EcoICRI	GAGCTC	2 cut(s)	1482, 1888
EcoO109I	RGGNCCY	2 cut(s)	336, 1691
EcoO65I	GGTNACC	1 cut(s)	849
EcoRI	GAATTC	1 cut(s)	552
EcoRII	CCWGG	4 cut(s)	51, 1490, 1554, 1998
EcoRV	GATATC	2 cut(s)	67, 369
EcoT14I	CCWWGG	2 cut(s)	1338, 1443
EcoT22I	ATGCAT	1 cut(s)	1022
EcoT38I	GRGCYC	3 cut(s)	1484, 1890, 2313
ErhI	CCWWGG	2 cut(s)	1338, 1443
FalI	AAGNNNNNCTT	6 cut(s)	466, 498, 627, 659, 1131, 1163
FaqI	GGGAC	2 cut(s)	1677, 2063
FbaI	TGATCA	2 cut(s)	1372, 1461
FblI	GTMKAC	1 cut(s)	1032
Fnu4HI	GCNGC	9 cut(s)	507, 536, 639, 1008, 1365, 1596, 1932, 1970, 1973
FokI	GGATG	7 cut(s)	139, 299, 926, 1321, 1571, 1865, 1874
FriOI	GRGCYC	3 cut(s)	1484, 1890, 2313
Fsp4HI	GCNGC	9 cut(s)	507, 536, 639, 1008, 1365, 1596, 1932, 1970, 1973
FspBI	CTAG	4 cut(s)	231, 498, 836, 1497
GlaI	GCGC	1 cut(s)	1184
GluI	GCNGC	9 cut(s)	507, 536, 639, 1008, 1365, 1596, 1932, 1970, 1973
GsaI	CCCAGC	1 cut(s)	1698
GsuI	CTGGAG	1 cut(s)	2324
HaeIII	GGCC	4 cut(s)	51, 337, 543, 1359
HapII	CCGG	1 cut(s)	1882
HhaI	GCGC	1 cut(s)	1185
Hin6I	GCGC	1 cut(s)	1183
HinP1I	GCGC	1 cut(s)	1183
HincII	GTYRAC	1 cut(s)	966
HindII	GTYRAC	1 cut(s)	966
HindIII	AAGCTT	4 cut(s)	1620, 1659, 1785, 2138
HpaII	CCGG	1 cut(s)	1882
HphI	GGTGA	3 cut(s)	843, 1637, 2347
Hpy166II	GTNNAC	5 cut(s)	833, 966, 1033, 1144, 1766
Hpy188III	TCNNGA	7 cut(s)	557, 577, 1060, 1505, 1682, 1813, 2303
Hpy8I	GTNNAC	5 cut(s)	833, 966, 1033, 1144, 1766
HpyAV	CCTTC	6 cut(s)	357, 428, 461, 914, 1226, 1511
HpyCH4III	ACNGT	9 cut(s)	148, 221, 729, 800, 1843, 2202, 2245, 2325, 2331
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 503, 638, 866, 1356
HpyF3I	CTNAG	9 cut(s)	177, 461, 473, 607, 1073, 1599, 1704, 1734, 1990
HspAI	GCGC	1 cut(s)	1183
KflI	GGGWCCC	1 cut(s)	1691
Ksp22I	TGATCA	2 cut(s)	1372, 1461
Kzo9I	GATC	9 cut(s)	613, 705, 1045, 1198, 1372, 1447, 1461, 1953, 2050
LguI	GCTCTTC	1 cut(s)	1102
LmnI	GCTCC	1 cut(s)	1885
Lsp1109I	GCAGC	9 cut(s)	493, 547, 650, 1019, 1376, 1582, 1918, 1956, 1959
LweI	GCATC	5 cut(s)	445, 452, 948, 1143, 1198
MaeI	CTAG	4 cut(s)	231, 498, 836, 1497
MalI	GATC	9 cut(s)	615, 707, 1047, 1200, 1374, 1449, 1463, 1955, 2052
MboI	GATC	9 cut(s)	613, 705, 1045, 1198, 1372, 1447, 1461, 1953, 2050
MflI	RGATCY	2 cut(s)	705, 1447
MhlI	GDGCHC	5 cut(s)	1484, 1768, 1890, 2022, 2313
MlsI	TGGCCA	1 cut(s)	1359
MluNI	TGGCCA	1 cut(s)	1359
MlyI	GAGTC	3 cut(s)	1267, 1679, 1865
MmeI	TCCRAC	5 cut(s)	625, 1073, 1195, 1475, 1839
Mox20I	TGGCCA	1 cut(s)	1359
Mph1103I	ATGCAT	1 cut(s)	1022
MroXI	GAANNNNTTC	3 cut(s)	564, 1222, 2288
MscI	TGGCCA	1 cut(s)	1359
MslI	CAYNNNNRTG	4 cut(s)	285, 609, 1139, 2059
Msp20I	TGGCCA	1 cut(s)	1359
MspA1I	CMGCKG	2 cut(s)	131, 1055
MspCI	CTTAAG	2 cut(s)	343, 1916
MspI	CCGG	1 cut(s)	1882
MspR9I	CCNGG	5 cut(s)	53, 1492, 1556, 1883, 2000
Mva1269I	GAATGC	5 cut(s)	358, 904, 919, 1698, 2288
MvaI	CCWGG	4 cut(s)	53, 1492, 1556, 2000
MwoI	GCNNNNNNNGC	5 cut(s)	48, 503, 638, 866, 1356
NciI	CCSGG	1 cut(s)	1883
NdeII	GATC	9 cut(s)	613, 705, 1045, 1198, 1372, 1447, 1461, 1953, 2050
NlaIV	GGNNCC	6 cut(s)	338, 707, 1449, 1489, 1692, 1693
NmuCI	GTSAC	3 cut(s)	849, 1342, 2335
NsiI	ATGCAT	1 cut(s)	1022
NspI	RCATGY	3 cut(s)	1020, 1979, 2380
NspV	TTCGAA	2 cut(s)	959, 2205
PaeI	GCATGC	1 cut(s)	2380
PciSI	GCTCTTC	1 cut(s)	1102
PctI	GAATGC	5 cut(s)	358, 904, 919, 1698, 2288
PdmI	GAANNNNTTC	3 cut(s)	564, 1222, 2288
PfoI	TCCNGGA	2 cut(s)	1490, 1881
PkrI	GCNGC	9 cut(s)	508, 537, 640, 1009, 1366, 1597, 1933, 1971, 1974
PleI	GAGTC	3 cut(s)	1266, 1679, 1865
PpsI	GAGTC	3 cut(s)	1266, 1679, 1865
PpuMI	RGGWCCY	1 cut(s)	1691
PshAI	GACNNNNGTC	2 cut(s)	1689, 2246
Psp124BI	GAGCTC	2 cut(s)	1484, 1890
Psp5II	RGGWCCY	1 cut(s)	1691
Psp6I	CCWGG	4 cut(s)	51, 1490, 1554, 1998
PspEI	GGTNACC	1 cut(s)	849
PspFI	CCCAGC	1 cut(s)	1694
PspGI	CCWGG	4 cut(s)	51, 1490, 1554, 1998
PspN4I	GGNNCC	6 cut(s)	338, 707, 1449, 1489, 1692, 1693
PspPI	GGNCC	8 cut(s)	336, 437, 976, 1144, 1582, 1636, 1691, 1815
PspPPI	RGGWCCY	1 cut(s)	1691
PstI	CTGCAG	2 cut(s)	376, 1750
PstNI	CAGNNNCTG	1 cut(s)	1370
PsuI	RGATCY	2 cut(s)	705, 1447
PvuII	CAGCTG	2 cut(s)	131, 1055
RsaI	GTAC	3 cut(s)	1126, 1823, 1848
RsaNI	GTAC	3 cut(s)	1125, 1822, 1847
RseI	CAYNNNNRTG	4 cut(s)	285, 609, 1139, 2059
SacI	GAGCTC	2 cut(s)	1484, 1890
SapI	GCTCTTC	1 cut(s)	1102
SatI	GCNGC	9 cut(s)	507, 536, 639, 1008, 1365, 1596, 1932, 1970, 1973
Sau3AI	GATC	9 cut(s)	613, 705, 1045, 1198, 1372, 1447, 1461, 1953, 2050
Sau96I	GGNCC	8 cut(s)	336, 437, 976, 1144, 1582, 1636, 1691, 1815
ScaI	AGTACT	2 cut(s)	1126, 1823
SchI	GAGTC	3 cut(s)	1267, 1679, 1865
ScrFI	CCNGG	5 cut(s)	53, 1492, 1556, 1883, 2000
SduI	GDGCHC	5 cut(s)	1484, 1768, 1890, 2022, 2313
SfaNI	GCATC	5 cut(s)	445, 452, 948, 1143, 1198
SfcI	CTRYAG	3 cut(s)	357, 372, 1746
SfuI	TTCGAA	2 cut(s)	959, 2205
SinI	GGWCC	7 cut(s)	437, 976, 1144, 1582, 1636, 1691, 1815
SmiMI	CAYNNNNRTG	4 cut(s)	285, 609, 1139, 2059
SmlI	CTYRAG	5 cut(s)	19, 343, 1850, 1916, 2026
SmoI	CTYRAG	5 cut(s)	19, 343, 1850, 1916, 2026
SphI	GCATGC	1 cut(s)	2380
SsiI	CCGC	2 cut(s)	40, 617
SspMI	CTAG	4 cut(s)	231, 498, 836, 1497
SstI	GAGCTC	2 cut(s)	1484, 1890
StyD4I	CCNGG	5 cut(s)	51, 1490, 1554, 1881, 1998
StyI	CCWWGG	2 cut(s)	1338, 1443
TaaI	ACNGT	9 cut(s)	148, 221, 729, 800, 1843, 2202, 2245, 2325, 2331
TaqI	TCGA	6 cut(s)	576, 959, 1137, 1782, 2205, 2353
TaqII	GACCGA	1 cut(s)	513
TatI	WGTACW	3 cut(s)	1124, 1821, 1846
TscAI	CASTG	8 cut(s)	144, 805, 915, 1351, 1471, 1732, 2027, 2205
TseFI	GTSAC	3 cut(s)	849, 1342, 2335
TseI	GCWGC	9 cut(s)	506, 535, 638, 1007, 1364, 1595, 1931, 1969, 1972
Tsp45I	GTSAC	3 cut(s)	849, 1342, 2335
TspGWI	ACGGA	1 cut(s)	1191
TspRI	CASTG	8 cut(s)	144, 805, 915, 1351, 1471, 1732, 2027, 2205
Vha464I	CTTAAG	2 cut(s)	343, 1916
VneI	GTGCAC	1 cut(s)	1764
VpaK11BI	GGWCC	7 cut(s)	437, 976, 1144, 1582, 1636, 1691, 1815
XceI	RCATGY	3 cut(s)	1020, 1979, 2380
XmiI	GTMKAC	1 cut(s)	1032
XmnI	GAANNNNTTC	3 cut(s)	564, 1222, 2288
XspI	CTAG	4 cut(s)	231, 498, 836, 1497
ZrmI	AGTACT	2 cut(s)	1126, 1823
Zsp2I	ATGCAT	1 cut(s)	1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.