Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

19256188 .. 19267393

Gene Structure 11206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG111400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCGTAGCTATCCGAATGGGGATTTTTGGAAAGATGAATATGACAAGCATGGAACATGCACCGTTAAAAAATTTCGTACACCTGCCGAGTACTTCCAGAAGGCAAATGACTTGTGGGAAGCCAACCCAATAGAGGATTGGTTTCGGCGTGATGGTCGCTTCACAGATACAGATGTCCAGCTCGCTGAGCTGAGAGGCGCGATCATGAACAAGTTCGGTTCTGTGCCATGGTTTCAGTGTGAGGACAAATTTGTGCGGCAGATAGGCTTGTGTTTTGATGAGGTTGGAGGGCTCGGTGCGAATTGTCCTAAAGAATATCAAAAGAAGCAAGTAACTATGCAGTACTGCAATGAAATTTTGACAGTTGTACTTGAGATGTTGGATGATTTTGACTCCTCCATCCGGGAGCTCTCTCTTTCATTGATTATTGAAAGGCTTAAGAACCAGAAAGCTGCAATGGAAGATTCTATTGAGATCATAATTGAGAAGCTGCTGCATGTTACAAAGGACTTAATTCCCCAGGTTGCAAATGAATCAGAGCACTGCTCGAGTATTGTTCTGTCGCTTTATGATCCATTCAGATGTTTAAGTCAGGGGCGGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

201

Amino Acids

23.33

Weight (kDa)

5.01

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	6 - 94	1.1e-14	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	91
Acc36I	ACCTGC	1 cut(s)	91
AccII	CGCG	1 cut(s)	200
AciI	CCGC	2 cut(s)	256, 598
AclWI	GGATC	1 cut(s)	566
AcsI	RAATTY	3 cut(s)	71, 248, 354
AfaI	GTAC	4 cut(s)	79, 92, 344, 369
AfiI	CCNNNNNNNGG	2 cut(s)	133, 402
AflII	CTTAAG	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	431
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	6 cut(s)	9, 181, 190, 409, 452, 490
AluI	AGCT	6 cut(s)	9, 181, 190, 409, 452, 490
Alw21I	GWGCWC	2 cut(s)	411, 543
AlwI	GGATC	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	547
AoxI	GGCC	1 cut(s)	599
ApeKI	GCWGC	3 cut(s)	452, 490, 493
ApoI	RAATTY	3 cut(s)	71, 248, 354
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	600
AsuC2I	CCSGG	1 cut(s)	404
AvaI	CYCGRG	1 cut(s)	547
BaeI	ACNNNNGTAYC	2 cut(s)	159, 192
BanII	GRGCYC	2 cut(s)	294, 411
Bbv12I	GWGCWC	2 cut(s)	411, 543
BbvI	GCAGC	3 cut(s)	439, 477, 480
BccI	CCATC	2 cut(s)	146, 407
BciT130I	CCWGG	1 cut(s)	521
BcnI	CCSGG	1 cut(s)	404
BfrI	CTTAAG	1 cut(s)	437
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	5 cut(s)	257, 453, 491, 494, 599
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	5 cut(s)	258, 454, 492, 495, 600
BmcAI	AGTACT	2 cut(s)	92, 344
Bme1390I	CCNGG	2 cut(s)	404, 521
BmeT110I	CYCGRG	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	600
BmrFI	CCNGG	2 cut(s)	404, 521
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	227, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 402
Bse3DI	GCAATG	2 cut(s)	355, 462
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	2 cut(s)	227, 519
BseGI	GGATG	2 cut(s)	388, 399
BseLI	CCNNNNNNNGG	2 cut(s)	133, 402
BseMI	GCAATG	2 cut(s)	355, 462
BseMII	CTCAG	2 cut(s)	177, 182
BseRI	GAGGAG	1 cut(s)	385
BseXI	GCAGC	3 cut(s)	439, 477, 480
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	601
BsiHKAI	GWGCWC	2 cut(s)	411, 543
BsiHKCI	CYCGRG	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	403
BslI	CCNNNNNNNGG	2 cut(s)	133, 402
BsnI	GGCC	1 cut(s)	601
BsoBI	CYCGRG	1 cut(s)	547
Bsp1286I	GDGCHC	3 cut(s)	294, 411, 543
Bsp143I	GATC	3 cut(s)	201, 474, 571
Bsp1720I	GCTNAGC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	227
BspACI	CCGC	2 cut(s)	256, 598
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	2 cut(s)	178, 183
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	204
BspMI	ACCTGC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	566
BspTI	CTTAAG	1 cut(s)	437
BsrDI	GCAATG	2 cut(s)	355, 462
BssECI	CCNNGG	2 cut(s)	227, 519
BssMI	GATC	3 cut(s)	201, 474, 571
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	2 cut(s)	64, 364
BstAFI	CTTAAG	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	186, 191
BstDSI	CCRYGG	1 cut(s)	227
BstF5I	GGATG	2 cut(s)	388, 399
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	204, 477, 574
BstMBI	GATC	3 cut(s)	201, 474, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	2 cut(s)	60, 500
BstSCI	CCNGG	2 cut(s)	402, 519
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	3 cut(s)	439, 477, 480
BsuRI	GGCC	1 cut(s)	601
BtgI	CCRYGG	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	388, 399
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	2 cut(s)	242, 541
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	183
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	600
Csp6I	GTAC	4 cut(s)	78, 91, 343, 368
CviAII	CATG	5 cut(s)	50, 57, 205, 228, 497
CviQI	GTAC	4 cut(s)	78, 91, 343, 368
DdeI	CTNAG	2 cut(s)	186, 191
DpnI	GATC	3 cut(s)	203, 476, 573
DpnII	GATC	3 cut(s)	201, 474, 571
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	227
Eco24I	GRGCYC	2 cut(s)	294, 411
Eco53kI	GAGCTC	1 cut(s)	409
Eco88I	CYCGRG	1 cut(s)	547
EcoICRI	GAGCTC	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	227
EcoT38I	GRGCYC	2 cut(s)	294, 411
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	5 cut(s)	53, 60, 208, 231, 500
FaiI	YATR	9 cut(s)	42, 51, 58, 206, 229, 338, 479, 498, 570
FatI	CATG	5 cut(s)	49, 56, 204, 227, 496
Fnu4HI	GCNGC	5 cut(s)	257, 453, 491, 494, 599
FokI	GGATG	2 cut(s)	386, 395
FriOI	GRGCYC	2 cut(s)	294, 411
Fsp4HI	GCNGC	5 cut(s)	257, 453, 491, 494, 599
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	5 cut(s)	257, 453, 491, 494, 599
HaeIII	GGCC	1 cut(s)	601
HapII	CCGG	1 cut(s)	403
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	5 cut(s)	53, 60, 208, 231, 500
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	3 cut(s)	392, 464, 533
HpaII	CCGG	1 cut(s)	403
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	3 cut(s)	15, 538, 581
Hpy188III	TCNNGA	2 cut(s)	97, 205
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	2 cut(s)	64, 364
HpyCH4V	TGCA	6 cut(s)	60, 340, 348, 455, 496, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	2 cut(s)	186, 191
Hsp92II	CATG	5 cut(s)	53, 60, 208, 231, 500
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	201, 474, 571
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	8 cut(s)	96, 110, 191, 416, 458, 506, 533, 578
Lsp1109I	GCAGC	3 cut(s)	439, 477, 480
MaeIII	GTNAC	2 cut(s)	331, 499
MalI	GATC	3 cut(s)	203, 476, 573
MboI	GATC	3 cut(s)	201, 474, 571
MboII	GAAGA	1 cut(s)	473
MhlI	GDGCHC	3 cut(s)	294, 411, 543
MluCI	AATT	6 cut(s)	71, 248, 301, 354, 480, 513
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	2 cut(s)	265, 360
MnlI	CCTC	6 cut(s)	127, 188, 235, 274, 281, 406
MroXI	GAANNNNTTC	1 cut(s)	212
MseI	TTAA	4 cut(s)	66, 438, 512, 587
MslI	CAYNNNNRTG	1 cut(s)	580
MspCI	CTTAAG	1 cut(s)	437
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	2 cut(s)	404, 521
MvaI	CCWGG	1 cut(s)	521
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	404
NcoI	CCATGG	1 cut(s)	227
NdeII	GATC	3 cut(s)	201, 474, 571
NlaIII	CATG	5 cut(s)	53, 60, 208, 231, 500
NmeAIII	GCCGAG	1 cut(s)	112
NspI	RCATGY	2 cut(s)	60, 500
PaeR7I	CTCGAG	1 cut(s)	547
PagI	TCATGA	1 cut(s)	204
PaqCI	CACCTGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	464, 533
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	5 cut(s)	258, 454, 492, 495, 600
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	600
PspXI	VCTCGAGB	1 cut(s)	547
RsaI	GTAC	4 cut(s)	79, 92, 344, 369
RsaNI	GTAC	4 cut(s)	78, 91, 343, 368
RseI	CAYNNNNRTG	1 cut(s)	580
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	4 cut(s)	66, 438, 512, 587
SatI	GCNGC	5 cut(s)	257, 453, 491, 494, 599
Sau3AI	GATC	3 cut(s)	201, 474, 571
Sau96I	GGNCC	1 cut(s)	600
ScaI	AGTACT	2 cut(s)	92, 344
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	404, 521
SduI	GDGCHC	3 cut(s)	294, 411, 543
SetI	ASST	9 cut(s)	11, 85, 183, 192, 285, 411, 454, 492, 525
Sfr274I	CTCGAG	1 cut(s)	547
SlaI	CTCGAG	1 cut(s)	547
SmiMI	CAYNNNNRTG	1 cut(s)	580
SmlI	CTYRAG	3 cut(s)	371, 437, 547
SmoI	CTYRAG	3 cut(s)	371, 437, 547
Sse9I	AATT	6 cut(s)	71, 248, 301, 354, 480, 513
SsiI	CCGC	2 cut(s)	256, 598
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	2 cut(s)	402, 519
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	64, 364
TaqI	TCGA	1 cut(s)	548
TasI	AATT	6 cut(s)	71, 248, 301, 354, 480, 513
TatI	WGTACW	3 cut(s)	90, 342, 367
TauI	GCSGC	2 cut(s)	259, 601
TfiI	GAWTC	2 cut(s)	464, 533
Tru1I	TTAA	4 cut(s)	66, 438, 512, 587
Tru9I	TTAA	4 cut(s)	66, 438, 512, 587
TscAI	CASTG	2 cut(s)	242, 548
TseI	GCWGC	3 cut(s)	452, 490, 493
TspDTI	ATGAA	5 cut(s)	51, 221, 366, 408, 546
TspRI	CASTG	2 cut(s)	242, 548
Vha464I	CTTAAG	1 cut(s)	437
XapI	RAATTY	3 cut(s)	71, 248, 354
XceI	RCATGY	2 cut(s)	60, 500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
XhoI	CTCGAG	1 cut(s)	547
XmnI	GAANNNNTTC	1 cut(s)	212
ZrmI	AGTACT	2 cut(s)	92, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.