Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Forward (+)

21630855 .. 21639291

Gene Structure 8437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG105400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGATTTCAGTGAAGGTCCAGCATCGTTCAATGATGCTCTGGGCGTACAAGGCCAAAAAGGAATTCAAGAAGTGATTCAGAATTTAGAGAAAGTAACGAAGTTGTTTTTCCAACACTTGGATGATCCGCACCACAAAGTTTTGCACAATCAGCCCCTTTCAACACTAGCAGATATTATTCGATCTTGCTGTAAGCCCTTTGAAAGTTACATGGAGAGGATCCTACCTCATGTTTTCTCACAGTTAATTGACCCAGAGGAGTTAGTTAGGCAATCTTACTCAACAACCAAGGTCATTGTTGGCAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

103

Amino Acids

11.71

Weight (kDa)

5.9

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	118
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	3 cut(s)	119, 214, 227
AcsI	RAATTY	2 cut(s)	63, 82
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	4 cut(s)	31, 68, 162, 203
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AlwI	GGATC	3 cut(s)	119, 214, 227
AoxI	GGCC	1 cut(s)	52
ApoI	RAATTY	2 cut(s)	63, 82
Asp700I	GAANNNNTTC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	221
BmsI	GCATC	2 cut(s)	25, 32
BsaJI	CCNNGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	118
BsnI	GGCC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	124, 182, 219
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	221
BspPI	GGATC	3 cut(s)	119, 214, 227
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	3 cut(s)	124, 182, 219
BssT1I	CCWWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	3 cut(s)	127, 185, 222
BstMBI	GATC	3 cut(s)	124, 182, 219
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 151
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	2 cut(s)	211, 230
CviJI	RGCY	3 cut(s)	54, 154, 196
CviKI_1	RGCY	3 cut(s)	54, 154, 196
CviQI	GTAC	1 cut(s)	47
DpnI	GATC	3 cut(s)	126, 184, 221
DpnII	GATC	3 cut(s)	124, 182, 219
Eco130I	CCWWGG	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	17
EcoRI	GAATTC	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	2 cut(s)	214, 233
FaiI	YATR	2 cut(s)	212, 231
FatI	CATG	2 cut(s)	210, 229
FokI	GGATG	1 cut(s)	134
FspBI	CTAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	214, 233
HinfI	GANTC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 151
Hsp92II	CATG	2 cut(s)	214, 233
Kzo9I	GATC	3 cut(s)	124, 182, 219
LpnPI	CCDG	3 cut(s)	26, 33, 267
LweI	GCATC	2 cut(s)	25, 32
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	2 cut(s)	94, 206
MalI	GATC	3 cut(s)	126, 184, 221
MboI	GATC	3 cut(s)	124, 182, 219
MflI	RGATCY	1 cut(s)	219
MluCI	AATT	3 cut(s)	63, 82, 246
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	3 cut(s)	210, 237, 250
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	51, 151
NdeII	GATC	3 cut(s)	124, 182, 219
NlaIII	CATG	2 cut(s)	214, 233
NlaIV	GGNNCC	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	76
PflMI	CCANNNNNTGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	219
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	245
Sau3AI	GATC	3 cut(s)	124, 182, 219
Sau96I	GGNCC	1 cut(s)	17
SetI	ASST	3 cut(s)	19, 229, 294
SfaNI	GCATC	2 cut(s)	25, 32
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	3 cut(s)	63, 82, 246
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	181
TasI	AATT	3 cut(s)	63, 82, 246
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	16
TspRI	CASTG	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	2 cut(s)	63, 82
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.