Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

19494740 .. 19497445

Gene Structure 2706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G008840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTATGGACATTTCAAGAAGCTGGATGAAGAGACTAAAAGGGGAGCTGCATCTTTGGAAGTAGAAGCCCAACTATCTCAGATTAGCACTGGAACTGAGGGAAGTCCTGCAGAAAGTAAGCATGGTGCACTTCAACAGCTAATCGGTGCTGCTATAACTAATGACCACTCTATTTGGACCCAGTACTTCAATCAAATCTTGACAGTTGTACTTGAGATTTTGGATGATTTTGACTCCTCCATCCGGGAGCTCTCTCTTTCATTGATTATTGAAAAGCTTATTAAGAACCAGAAAGCTGCAATGGAAGATTCTGTTGAGATCATAATTGAGAAGCTGCTGCATGTTACAAAGGACTTAATTCCCCAGGTTGCAAATGAATTAGAGCACTGCTCGAGAATTGTTCTGTCGCTGTATGATCCATACAGATGTTTAAGTGTATGTATCCATTCCAGTACTCCACCCAGCCTTTGTGAAATTTTTATCAGCAGTGAGAAAACCGGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

168

Amino Acids

18.68

Weight (kDa)

4.98

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	474
AfaI	GTAC	3 cut(s)	185, 210, 454
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgeI	ACCGGT	1 cut(s)	497
AgsI	TTSAA	4 cut(s)	16, 134, 190, 272
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	7 cut(s)	22, 47, 139, 250, 277, 296, 334
AluI	AGCT	7 cut(s)	22, 47, 139, 250, 277, 296, 334
Alw21I	GWGCWC	3 cut(s)	130, 252, 387
Alw26I	GTCTC	1 cut(s)	26
Alw44I	GTGCAC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	410
Ama87I	CYCGRG	1 cut(s)	391
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	5 cut(s)	47, 149, 296, 334, 337
ApoI	RAATTY	1 cut(s)	474
AsiGI	ACCGGT	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	3 cut(s)	130, 252, 387
BbvI	GCAGC	5 cut(s)	34, 136, 283, 321, 324
BccI	CCATC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	365
BciVI	GTATCC	1 cut(s)	452
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	452
BisI	GCNGC	5 cut(s)	48, 150, 297, 335, 338
BlsI	GCNGC	5 cut(s)	49, 151, 298, 336, 339
BmcAI	AGTACT	2 cut(s)	185, 454
Bme1390I	CCNGG	2 cut(s)	245, 365
Bme18I	GGWCC	1 cut(s)	177
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	2 cut(s)	245, 365
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	59
BmuI	ACTGGG	1 cut(s)	175
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	3 cut(s)	94, 181, 450
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	3 cut(s)	31, 229, 240
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	87, 92
BseNI	ACTGG	3 cut(s)	94, 181, 450
BseRI	GAGGAG	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	5 cut(s)	34, 136, 283, 321, 324
BseYI	CCCAGC	1 cut(s)	461
BshTI	ACCGGT	1 cut(s)	497
BsiHKAI	GWGCWC	3 cut(s)	130, 252, 387
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	2 cut(s)	244, 498
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	391
Bsp1286I	GDGCHC	3 cut(s)	130, 252, 387
Bsp143I	GATC	2 cut(s)	318, 415
BspCNI	CTCAG	2 cut(s)	88, 91
BspLI	GGNNCC	1 cut(s)	179
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	497
BsrI	ACTGG	3 cut(s)	94, 181, 450
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	2 cut(s)	318, 415
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	78, 96
BstF5I	GGATG	3 cut(s)	31, 229, 240
BstKTI	GATC	2 cut(s)	321, 418
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	2 cut(s)	318, 415
BstNI	CCWGG	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	243, 363
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	5 cut(s)	34, 136, 283, 321, 324
BsuI	GTATCC	1 cut(s)	452
BtsCI	GGATG	3 cut(s)	31, 229, 240
BtsI	GCAGTG	2 cut(s)	385, 493
BtsIMutI	CAGTG	3 cut(s)	87, 385, 493
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	3 cut(s)	184, 209, 453
CspAI	ACCGGT	1 cut(s)	497
CspCI	CAANNNNNGTGG	2 cut(s)	155, 190
CviAII	CATG	2 cut(s)	122, 341
CviJI	RGCY	9 cut(s)	22, 47, 68, 139, 250, 277, 296, 334, 465
CviKI_1	RGCY	9 cut(s)	22, 47, 68, 139, 250, 277, 296, 334, 465
CviQI	GTAC	3 cut(s)	184, 209, 453
DdeI	CTNAG	2 cut(s)	78, 96
DpnI	GATC	2 cut(s)	320, 417
DpnII	GATC	2 cut(s)	318, 415
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	391
EcoICRI	GAGCTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	2 cut(s)	125, 344
FaiI	YATR	8 cut(s)	6, 123, 155, 323, 342, 414, 421, 439
FatI	CATG	2 cut(s)	121, 340
Fnu4HI	GCNGC	5 cut(s)	48, 150, 297, 335, 338
FokI	GGATG	3 cut(s)	38, 227, 236
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	5 cut(s)	48, 150, 297, 335, 338
GluI	GCNGC	5 cut(s)	48, 150, 297, 335, 338
GsaI	CCCAGC	1 cut(s)	465
HapII	CCGG	2 cut(s)	244, 498
Hin1II	CATG	2 cut(s)	125, 344
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	2 cut(s)	233, 308
HpaII	CCGG	2 cut(s)	244, 498
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	3 cut(s)	16, 199, 393
Hpy8I	GTNNAC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	6 cut(s)	50, 110, 128, 299, 340, 371
HpyF3I	CTNAG	2 cut(s)	78, 96
Hsp92II	CATG	2 cut(s)	125, 344
Kzo9I	GATC	2 cut(s)	318, 415
LmnI	GCTCC	2 cut(s)	44, 247
Lsp1109I	GCAGC	5 cut(s)	34, 136, 283, 321, 324
LweI	GCATC	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	2 cut(s)	320, 417
MboI	GATC	2 cut(s)	318, 415
MboII	GAAGA	2 cut(s)	41, 317
MhlI	GDGCHC	3 cut(s)	130, 252, 387
MluCI	AATT	5 cut(s)	324, 357, 377, 396, 474
MlyI	GAGTC	1 cut(s)	227
MnlI	CCTC	2 cut(s)	91, 247
MseI	TTAA	3 cut(s)	282, 356, 431
MslI	CAYNNNNRTG	1 cut(s)	424
MspI	CCGG	2 cut(s)	244, 498
MspR9I	CCNGG	2 cut(s)	245, 365
MvaI	CCWGG	1 cut(s)	365
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	318, 415
NlaIII	CATG	2 cut(s)	125, 344
NlaIV	GGNNCC	1 cut(s)	179
NspI	RCATGY	1 cut(s)	344
PaeR7I	CTCGAG	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	308
PfoI	TCCNGGA	1 cut(s)	243
PinAI	ACCGGT	1 cut(s)	497
PkrI	GCNGC	5 cut(s)	49, 151, 298, 336, 339
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	363
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	112
RsaI	GTAC	3 cut(s)	185, 210, 454
RsaNI	GTAC	3 cut(s)	184, 209, 453
RseI	CAYNNNNRTG	1 cut(s)	424
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	282, 356, 431
SatI	GCNGC	5 cut(s)	48, 150, 297, 335, 338
Sau3AI	GATC	2 cut(s)	318, 415
Sau96I	GGNCC	1 cut(s)	177
ScaI	AGTACT	2 cut(s)	185, 454
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	245, 365
SduI	GDGCHC	3 cut(s)	130, 252, 387
SetI	ASST	8 cut(s)	24, 49, 141, 252, 279, 298, 336, 369
SfaNI	GCATC	1 cut(s)	59
SfcI	CTRYAG	1 cut(s)	108
Sfr274I	CTCGAG	1 cut(s)	391
SinI	GGWCC	1 cut(s)	177
SlaI	CTCGAG	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	424
SmlI	CTYRAG	2 cut(s)	212, 391
SmoI	CTYRAG	2 cut(s)	212, 391
Sse9I	AATT	5 cut(s)	324, 357, 377, 396, 474
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	243, 363
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	392
TasI	AATT	5 cut(s)	324, 357, 377, 396, 474
TatI	WGTACW	3 cut(s)	183, 208, 452
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	3 cut(s)	282, 356, 431
Tru9I	TTAA	3 cut(s)	282, 356, 431
TscAI	CASTG	3 cut(s)	94, 392, 493
TseI	GCWGC	5 cut(s)	47, 149, 296, 334, 337
TspDTI	ATGAA	3 cut(s)	42, 249, 390
TspRI	CASTG	3 cut(s)	94, 392, 493
VneI	GTGCAC	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	177
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	1 cut(s)	344
XhoI	CTCGAG	1 cut(s)	391
ZrmI	AGTACT	2 cut(s)	185, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.