Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

19124959 .. 19145041

Gene Structure 20083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG110500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTCGATCGAAGAGAGAAGACAAGAGATCCGAGCTGCTTGGTCACTCCGAAGGCCGATGAATCTACCACTGCGGTGAACCCGATGAGCTCGTTGATGGATGCAACCAACTACATAGATCTAGATCGTGATCCTGGAAGTCTGTACTTCAATCAAATCTTGACAGTTGTACTTGAGATTTTGGATGATTTTGACTCCTCCATCCGGGAGCTCTCTCTTTCATTGATTATTGAAAAGCTTAATAAGAACCAGAAAGCTGCAATGGAAGATTCTGTTGAGATCATAATTGAGAAGCTGCTGCATGTTACAAAGGACTTAATTCCCCAGGTTGCAAATGAATTAGAGCACTGCTCGAGAATTGTTCTGTCGCTGTATGATCCATACAGATGTTTAAGTGTATGTATCCATTCCAGTACTCCACCCAGCCTTTGTGAAATTTTTATCAGCAGTGAGAAAACCGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

155

Amino Acids

17.4

Weight (kDa)

4.67

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	3 cut(s)	23, 125, 371
AcsI	RAATTY	1 cut(s)	435
AfaI	GTAC	3 cut(s)	146, 171, 415
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgeI	ACCGGT	1 cut(s)	458
AgsI	TTSAA	2 cut(s)	151, 233
AjnI	CCWGG	2 cut(s)	133, 324
AleI	CACNNNNGTG	1 cut(s)	74
AluBI	AGCT	6 cut(s)	36, 90, 211, 238, 257, 295
AluI	AGCT	6 cut(s)	36, 90, 211, 238, 257, 295
Alw21I	GWGCWC	3 cut(s)	92, 213, 348
AlwI	GGATC	3 cut(s)	23, 125, 371
Ama87I	CYCGRG	1 cut(s)	352
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	4 cut(s)	36, 257, 295, 298
ApoI	RAATTY	1 cut(s)	435
AsiGI	ACCGGT	1 cut(s)	458
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	352
BanII	GRGCYC	2 cut(s)	92, 213
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	3 cut(s)	92, 213, 348
BbvI	GCAGC	4 cut(s)	23, 244, 282, 285
BccI	CCATC	2 cut(s)	91, 209
BciT130I	CCWGG	2 cut(s)	135, 326
BciVI	GTATCC	1 cut(s)	413
BcnI	CCSGG	1 cut(s)	206
BfaI	CTAG	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	413
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	4 cut(s)	37, 258, 296, 299
BlsI	GCNGC	4 cut(s)	38, 259, 297, 300
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	3 cut(s)	135, 206, 326
BmeT110I	CYCGRG	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	3 cut(s)	135, 206, 326
BmsI	GCATC	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	26
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	206
BsaBI	GATNNNNATC	2 cut(s)	123, 129
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	2 cut(s)	123, 129
BseBI	CCWGG	2 cut(s)	135, 326
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	3 cut(s)	106, 190, 201
BseJI	GATNNNNATC	2 cut(s)	123, 129
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	4 cut(s)	23, 244, 282, 285
BseYI	CCCAGC	1 cut(s)	422
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	1 cut(s)	56
BshTI	ACCGGT	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	10
BsiHKAI	GWGCWC	3 cut(s)	92, 213, 348
BsiHKCI	CYCGRG	1 cut(s)	352
BsiSI	CCGG	2 cut(s)	205, 459
BslI	CCNNNNNNNGG	1 cut(s)	204
BsnI	GGCC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	352
Bsp1286I	GDGCHC	3 cut(s)	92, 213, 348
Bsp143I	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	463
BspPI	GGATC	3 cut(s)	23, 125, 371
BsrDI	GCAATG	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	411
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
Bst2UI	CCWGG	2 cut(s)	135, 326
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	7
BstF5I	GGATG	3 cut(s)	106, 190, 201
BstKTI	GATC	7 cut(s)	10, 31, 121, 127, 133, 282, 379
BstMBI	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
BstMCI	CGRYCG	1 cut(s)	10
BstNI	CCWGG	2 cut(s)	135, 326
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	133, 204, 324
BstV1I	GCAGC	4 cut(s)	23, 244, 282, 285
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	2 cut(s)	28, 118
BstYI	RGATCY	2 cut(s)	28, 118
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	106, 190, 201
BtsI	GCAGTG	3 cut(s)	69, 346, 454
BtsIMutI	CAGTG	3 cut(s)	69, 346, 454
Cfr10I	RCCGGY	1 cut(s)	458
Csp6I	GTAC	3 cut(s)	145, 170, 414
CspAI	ACCGGT	1 cut(s)	458
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	8 cut(s)	36, 56, 90, 211, 238, 257, 295, 426
CviKI_1	RGCY	8 cut(s)	36, 56, 90, 211, 238, 257, 295, 426
CviQI	GTAC	3 cut(s)	145, 170, 414
DpnI	GATC	7 cut(s)	9, 30, 120, 126, 132, 281, 378
DpnII	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Ecl136II	GAGCTC	2 cut(s)	90, 211
Eco24I	GRGCYC	2 cut(s)	92, 213
Eco53kI	GAGCTC	2 cut(s)	90, 211
Eco88I	CYCGRG	1 cut(s)	352
EcoICRI	GAGCTC	2 cut(s)	90, 211
EcoRII	CCWGG	2 cut(s)	133, 324
EcoT38I	GRGCYC	2 cut(s)	92, 213
FaeI	CATG	1 cut(s)	305
FaiI	YATR	6 cut(s)	116, 284, 303, 375, 382, 400
FatI	CATG	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	37, 258, 296, 299
FokI	GGATG	3 cut(s)	113, 188, 197
FriOI	GRGCYC	2 cut(s)	92, 213
Fsp4HI	GCNGC	4 cut(s)	37, 258, 296, 299
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	4 cut(s)	37, 258, 296, 299
GsaI	CCCAGC	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	2 cut(s)	205, 459
Hin1II	CATG	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	3 cut(s)	62, 194, 269
HpaII	CCGG	2 cut(s)	205, 459
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	33, 51
Hpy188III	TCNNGA	5 cut(s)	122, 128, 160, 354, 465
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	4 cut(s)	104, 260, 301, 332
Hsp92II	CATG	1 cut(s)	305
Kzo9I	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	8 cut(s)	120, 147, 218, 263, 311, 338, 424, 436
Lsp1109I	GCAGC	4 cut(s)	23, 244, 282, 285
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	2 cut(s)	43, 304
MalI	GATC	7 cut(s)	9, 30, 120, 126, 132, 281, 378
MboI	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
MboII	GAAGA	3 cut(s)	24, 31, 278
MflI	RGATCY	2 cut(s)	28, 118
MhlI	GDGCHC	3 cut(s)	92, 213, 348
MluCI	AATT	5 cut(s)	285, 318, 338, 357, 435
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	1 cut(s)	208
MseI	TTAA	3 cut(s)	240, 317, 392
MslI	CAYNNNNRTG	2 cut(s)	74, 385
MspI	CCGG	2 cut(s)	205, 459
MspR9I	CCNGG	3 cut(s)	135, 206, 326
MvaI	CCWGG	2 cut(s)	135, 326
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	1 cut(s)	463
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	305
OliI	CACNNNNGTG	1 cut(s)	74
PaeR7I	CTCGAG	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	62, 269
PfoI	TCCNGGA	2 cut(s)	133, 204
PinAI	ACCGGT	1 cut(s)	458
PkrI	GCNGC	4 cut(s)	38, 259, 297, 300
Ple19I	CGATCG	1 cut(s)	10
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp124BI	GAGCTC	2 cut(s)	92, 213
Psp6I	CCWGG	2 cut(s)	133, 324
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	133, 324
PspN4I	GGNNCC	1 cut(s)	463
PsuI	RGATCY	2 cut(s)	28, 118
PvuI	CGATCG	1 cut(s)	10
RsaI	GTAC	3 cut(s)	146, 171, 415
RsaNI	GTAC	3 cut(s)	145, 170, 414
RseI	CAYNNNNRTG	2 cut(s)	74, 385
SacI	GAGCTC	2 cut(s)	92, 213
SaqAI	TTAA	3 cut(s)	240, 317, 392
SatI	GCNGC	4 cut(s)	37, 258, 296, 299
Sau3AI	GATC	7 cut(s)	7, 28, 118, 124, 130, 279, 376
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	3 cut(s)	135, 206, 326
SduI	GDGCHC	3 cut(s)	92, 213, 348
SetI	ASST	7 cut(s)	38, 92, 213, 240, 259, 297, 330
SfaNI	GCATC	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	352
SlaI	CTCGAG	1 cut(s)	352
SmiMI	CAYNNNNRTG	2 cut(s)	74, 385
SmlI	CTYRAG	2 cut(s)	173, 352
SmoI	CTYRAG	2 cut(s)	173, 352
Sse9I	AATT	5 cut(s)	285, 318, 338, 357, 435
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	122
SstI	GAGCTC	2 cut(s)	92, 213
StyD4I	CCNGG	3 cut(s)	133, 204, 324
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	3 cut(s)	6, 10, 353
TasI	AATT	5 cut(s)	285, 318, 338, 357, 435
TatI	WGTACW	3 cut(s)	144, 169, 413
TfiI	GAWTC	2 cut(s)	62, 269
Tru1I	TTAA	3 cut(s)	240, 317, 392
Tru9I	TTAA	3 cut(s)	240, 317, 392
TscAI	CASTG	3 cut(s)	76, 353, 454
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	4 cut(s)	36, 257, 295, 298
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	75, 210, 351
TspRI	CASTG	3 cut(s)	76, 353, 454
XapI	RAATTY	1 cut(s)	435
XbaI	TCTAGA	1 cut(s)	121
XceI	RCATGY	1 cut(s)	305
XhoI	CTCGAG	1 cut(s)	352
XspI	CTAG	1 cut(s)	122
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.