Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

22047606 .. 22048594

Gene Structure 989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAAGCACTTGTGATATTATCATTTGTCCTTCTATCTATTTTTCCTCAACTGAGTGCGCAGCTAGGAGAACCGTATTACCAATACATACAACTCTCACTTCAAGTCCCCAAGTCGAGGGACCCTCAATCTACTTTGGAGTATTTCCCTTTGCACGGCTTTCGGCCGGTAAACACATCTCTATCTAACCCGAATTTGCCTTTGGGTTTTAACCGGTATACACCTATCGAAAGGTGTCCACAAGCCACTTCTGGGCCTTTTTTTACAAGTCAGTTACCCCAAGACCTGAGAACTGAACTCAAGTTATGTTGGATGAGTATAGGAGTACCAGGCCAACGCACGATGACGGATGAGCGATTTTGGCTATATGAATACAGTAAACATGGGCAATGTACTATTAACGAATATCCGACCCCTCAAGATTACTTCGCCATGGCAGTTAACCTGTGGCATCTCTATCCTGTGGATAAGTGGTTTAAGAATAATGGATTGCAGCCAAAAAAAGATAAACCGCTCCAAGATTTTGTTGCTGTCATCTCAAAAGAATTCGGCGCTATTCCATGGCTAACGTGTTACGACAACGGGAAGAAGCTGAAGGAGGTGGGCTTGTGTTTCTTAAAATCATCCAGTGTGAATGCGAATCCTGCCCCTACAAGTTGTCCTATAAGGGCACTAACGTATGATCTAAGATGTAATTATTTGATACAATATGATCTAGGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

242

Amino Acids

27.65

Weight (kDa)

8.09

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	44 - 209	1.6e-21	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	60
AccBSI	CCGCTC	1 cut(s)	514
AccI	GTMKAC	1 cut(s)	218
AciI	CCGC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	2 cut(s)	193, 545
AcuI	CTGAAG	1 cut(s)	614
AfaI	GTAC	2 cut(s)	327, 394
AfiI	CCNNNNNNNGG	3 cut(s)	117, 155, 252
AflIII	ACRYGT	1 cut(s)	569
AgeI	ACCGGT	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	2 cut(s)	64, 592
AluI	AGCT	2 cut(s)	64, 592
AoxI	GGCC	3 cut(s)	164, 254, 331
ApeKI	GCWGC	2 cut(s)	61, 493
ApoI	RAATTY	2 cut(s)	193, 545
AsiGI	ACCGGT	1 cut(s)	213
AspLEI	GCGC	2 cut(s)	61, 554
AspS9I	GGNCC	3 cut(s)	121, 254, 719
AvaII	GGWCC	2 cut(s)	121, 719
BaeGI	GKGCMC	1 cut(s)	673
BbvI	GCAGC	2 cut(s)	73, 505
BceAI	ACGGC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	1 cut(s)	330
BfaI	CTAG	2 cut(s)	65, 716
BfoI	RGCGCY	1 cut(s)	555
BisI	GCNGC	2 cut(s)	62, 494
BlsI	GCNGC	2 cut(s)	63, 495
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	2 cut(s)	121, 719
BmgT120I	GGNCC	3 cut(s)	121, 254, 719
BmiI	GGNNCC	2 cut(s)	122, 123
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	460
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpuEI	CTTGAG	2 cut(s)	284, 402
BsaJI	CCNNGG	2 cut(s)	432, 560
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 155, 252
Bse118I	RCCGGY	2 cut(s)	166, 213
Bse1I	ACTGG	1 cut(s)	627
Bse3DI	GCAATG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	432, 560
BseGI	GGATG	3 cut(s)	318, 355, 623
BseLI	CCNNNNNNNGG	3 cut(s)	117, 155, 252
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	2 cut(s)	44, 278
BseNI	ACTGG	1 cut(s)	627
BseSI	GKGCMC	1 cut(s)	673
BseX3I	CGGCCG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	73, 505
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	3 cut(s)	166, 256, 333
BshTI	ACCGGT	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	167, 214
BslFI	GGGAC	2 cut(s)	92, 134
BslI	CCNNNNNNNGG	3 cut(s)	117, 155, 252
BsmFI	GGGAC	2 cut(s)	92, 134
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	3 cut(s)	166, 256, 333
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp143I	GATC	2 cut(s)	682, 712
Bsp19I	CCATGG	2 cut(s)	432, 560
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	3 cut(s)	166, 256, 333
BspCNI	CTCAG	2 cut(s)	45, 279
BspLI	GGNNCC	2 cut(s)	122, 123
BsrBI	CCGCTC	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	395
BsrFI	RCCGGY	2 cut(s)	166, 213
BsrI	ACTGG	1 cut(s)	627
BssAI	RCCGGY	2 cut(s)	166, 213
BssECI	CCNNGG	2 cut(s)	432, 560
BssMI	GATC	2 cut(s)	682, 712
BssNAI	GTATAC	1 cut(s)	219
BssT1I	CCWWGG	2 cut(s)	432, 560
Bst1107I	GTATAC	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	2 cut(s)	75, 377
BstDEI	CTNAG	3 cut(s)	53, 287, 686
BstDSI	CCRYGG	2 cut(s)	432, 560
BstF5I	GGATG	3 cut(s)	318, 355, 623
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	2 cut(s)	61, 554
BstKTI	GATC	2 cut(s)	685, 715
BstMBI	GATC	2 cut(s)	682, 712
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 644
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	673
BstV1I	GCAGC	2 cut(s)	73, 505
BstZ17I	GTATAC	1 cut(s)	219
BstZI	CGGCCG	1 cut(s)	164
BsuRI	GGCC	3 cut(s)	166, 256, 333
BtgI	CCRYGG	2 cut(s)	432, 560
BtsCI	GGATG	3 cut(s)	318, 355, 623
BtsIMutI	CAGTG	1 cut(s)	634
CfoI	GCGC	2 cut(s)	61, 554
Cfr10I	RCCGGY	2 cut(s)	166, 213
Cfr13I	GGNCC	3 cut(s)	121, 254, 719
Csp6I	GTAC	2 cut(s)	326, 393
CspAI	ACCGGT	1 cut(s)	213
CviAII	CATG	3 cut(s)	383, 433, 561
CviQI	GTAC	2 cut(s)	326, 393
DdeI	CTNAG	3 cut(s)	53, 287, 686
DpnI	GATC	2 cut(s)	684, 714
DpnII	GATC	2 cut(s)	682, 712
EaeI	YGGCCR	1 cut(s)	164
EagI	CGGCCG	1 cut(s)	164
EclXI	CGGCCG	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	432, 560
Eco47I	GGWCC	2 cut(s)	121, 719
Eco52I	CGGCCG	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	614
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	2 cut(s)	432, 560
ErhI	CCWWGG	2 cut(s)	432, 560
FaeI	CATG	3 cut(s)	386, 436, 564
FaqI	GGGAC	2 cut(s)	92, 134
FatI	CATG	3 cut(s)	382, 432, 560
FblI	GTMKAC	1 cut(s)	218
Fnu4HI	GCNGC	2 cut(s)	62, 494
FokI	GGATG	3 cut(s)	325, 362, 610
Fsp4HI	GCNGC	2 cut(s)	62, 494
FspBI	CTAG	2 cut(s)	65, 716
FspI	TGCGCA	1 cut(s)	60
GlaI	GCGC	2 cut(s)	60, 553
GluI	GCNGC	2 cut(s)	62, 494
HaeII	RGCGCY	1 cut(s)	555
HaeIII	GGCC	3 cut(s)	166, 256, 333
HapII	CCGG	2 cut(s)	167, 214
HhaI	GCGC	2 cut(s)	61, 554
Hin1II	CATG	3 cut(s)	386, 436, 564
Hin6I	GCGC	2 cut(s)	59, 552
HinP1I	GCGC	2 cut(s)	59, 552
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	1 cut(s)	640
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	2 cut(s)	167, 214
Hpy166II	GTNNAC	5 cut(s)	172, 219, 239, 380, 442
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	5 cut(s)	172, 219, 239, 380, 442
HpyAV	CCTTC	2 cut(s)	41, 589
HpyCH4III	ACNGT	2 cut(s)	75, 377
HpyCH4IV	ACGT	2 cut(s)	569, 677
HpyCH4V	TGCA	2 cut(s)	154, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 644
HpyF3I	CTNAG	3 cut(s)	53, 287, 686
HpySE526I	ACGT	2 cut(s)	569, 677
Hsp92II	CATG	3 cut(s)	386, 436, 564
HspAI	GCGC	2 cut(s)	59, 552
KflI	GGGWCCC	1 cut(s)	121
KspAI	GTTAAC	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	682, 712
LmnI	GCTCC	1 cut(s)	519
Lsp1109I	GCAGC	2 cut(s)	73, 505
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	2 cut(s)	65, 716
MaeII	ACGT	2 cut(s)	569, 677
MaeIII	GTNAC	2 cut(s)	273, 572
MalI	GATC	2 cut(s)	684, 714
MbiI	CCGCTC	1 cut(s)	514
MboI	GATC	2 cut(s)	682, 712
MboII	GAAGA	1 cut(s)	598
MhlI	GDGCHC	1 cut(s)	673
MluCI	AATT	3 cut(s)	193, 545, 694
MmeI	TCCRAC	2 cut(s)	290, 434
MnlI	CCTC	5 cut(s)	57, 111, 135, 426, 592
MseI	TTAA	5 cut(s)	210, 399, 441, 477, 617
MspI	CCGG	2 cut(s)	167, 214
MspR9I	CCNGG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	640
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	361, 644
NcoI	CCATGG	2 cut(s)	432, 560
NdeII	GATC	2 cut(s)	682, 712
NlaIII	CATG	3 cut(s)	386, 436, 564
NlaIV	GGNNCC	2 cut(s)	122, 123
NsbI	TGCGCA	1 cut(s)	60
PctI	GAATGC	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	640
PinAI	ACCGGT	1 cut(s)	213
PkrI	GCNGC	2 cut(s)	63, 495
PpuMI	RGGWCCY	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	122, 123
PspPI	GGNCC	3 cut(s)	121, 254, 719
PspPPI	RGGWCCY	1 cut(s)	121
RsaI	GTAC	2 cut(s)	327, 394
RsaNI	GTAC	2 cut(s)	326, 393
SaqAI	TTAA	5 cut(s)	210, 399, 441, 477, 617
SatI	GCNGC	2 cut(s)	62, 494
Sau3AI	GATC	2 cut(s)	682, 712
Sau96I	GGNCC	3 cut(s)	121, 254, 719
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	673
SfaNI	GCATC	1 cut(s)	460
SinI	GGWCC	2 cut(s)	121, 719
SmlI	CTYRAG	2 cut(s)	299, 417
SmoI	CTYRAG	2 cut(s)	299, 417
Sse9I	AATT	3 cut(s)	193, 545, 694
SsiI	CCGC	1 cut(s)	512
SspMI	CTAG	2 cut(s)	65, 716
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	2 cut(s)	432, 560
TaaI	ACNGT	2 cut(s)	75, 377
TaiI	ACGT	2 cut(s)	572, 680
TaqI	TCGA	2 cut(s)	116, 228
TasI	AATT	3 cut(s)	193, 545, 694
TatI	WGTACW	1 cut(s)	392
TfiI	GAWTC	1 cut(s)	640
Tru1I	TTAA	5 cut(s)	210, 399, 441, 477, 617
Tru9I	TTAA	5 cut(s)	210, 399, 441, 477, 617
TscAI	CASTG	1 cut(s)	634
TseI	GCWGC	2 cut(s)	61, 493
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	1 cut(s)	634
VpaK11BI	GGWCC	2 cut(s)	121, 719
XapI	RAATTY	2 cut(s)	193, 545
XmiI	GTMKAC	1 cut(s)	218
XspI	CTAG	2 cut(s)	65, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.