Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8432325.1

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Forward (+)

283 .. 594

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8432325.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgacagattcaaccacctcaaataacaaaggtagtaaccgcaatgatgccctggttttgtctgatatcattacgcaaattcaagcttccaaagattctgctaaatcatcatatcgcagtaatttatcagctgaaacactgccaactgtttcatcctacagcgtaaagagggcttctgagagaatccacgaaatgggtttcattgaagagagtgctgacagtagggaagctaggcgaactatgaataatcaagctgacaggcattatgtccacatctcgccgcccggggtgtgggggggcggcgcgctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

103

Amino Acids

11.26

Weight (kDa)

6.83

Isoelectric Point (pI)

62.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	193
AccII	CGCG	1 cut(s)	305
AciI	CCGC	3 cut(s)	40, 281, 300
AcsI	RAATTY	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	193, 291
AgsI	TTSAA	3 cut(s)	12, 83, 206
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	4 cut(s)	86, 131, 230, 254
AluI	AGCT	4 cut(s)	86, 131, 230, 254
Ama87I	CYCGRG	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	78
AspLEI	GCGC	2 cut(s)	305, 307
AsuC2I	CCSGG	2 cut(s)	285, 286
AvaI	CYCGRG	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	53
BcnI	CCSGG	2 cut(s)	285, 286
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	2 cut(s)	281, 301
BlsI	GCNGC	2 cut(s)	282, 302
Bme1390I	CCNGG	3 cut(s)	53, 285, 286
BmeT110I	CYCGRG	1 cut(s)	284
BmrFI	CCNGG	3 cut(s)	53, 285, 286
BmsI	GCATC	1 cut(s)	37
BpuMI	CCSGG	2 cut(s)	285, 286
BsaJI	CCNNGG	3 cut(s)	51, 284, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 291
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	3 cut(s)	51, 284, 285
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	2 cut(s)	193, 291
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	168
BsePI	GCGCGC	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	2 cut(s)	193, 291
BsoBI	CYCGRG	1 cut(s)	284
BspACI	CCGC	3 cut(s)	40, 281, 300
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	51, 284, 285
BssHII	GCGCGC	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	148, 221
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	2 cut(s)	305, 307
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	3 cut(s)	51, 283, 284
BstSFI	CTRYAG	1 cut(s)	157
BstUI	CGCG	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	152
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	305
CfoI	GCGC	2 cut(s)	305, 307
Cfr9I	CCCGGG	1 cut(s)	284
CviJI	RGCY	5 cut(s)	86, 131, 173, 230, 254
CviKI_1	RGCY	5 cut(s)	86, 131, 173, 230, 254
DdeI	CTNAG	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	51
EcoRV	GATATC	1 cut(s)	67
FaiI	YATR	3 cut(s)	112, 242, 267
Fnu4HI	GCNGC	2 cut(s)	281, 301
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	2 cut(s)	281, 301
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	2 cut(s)	304, 306
GluI	GCNGC	2 cut(s)	281, 301
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	2 cut(s)	305, 307
Hin6I	GCGC	2 cut(s)	303, 305
HinP1I	GCGC	2 cut(s)	303, 305
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	3 cut(s)	8, 95, 183
HpaII	CCGG	1 cut(s)	285
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	64, 178
Hpy8I	GTNNAC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	148, 221
HpyF3I	CTNAG	1 cut(s)	177
HspAI	GCGC	2 cut(s)	303, 305
LpnPI	CCDG	4 cut(s)	38, 65, 244, 298
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	35
MboII	GAAGA	1 cut(s)	218
MluCI	AATT	2 cut(s)	78, 121
MnlI	CCTC	2 cut(s)	28, 162
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	3 cut(s)	53, 285, 286
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	305
NciI	CCSGG	2 cut(s)	285, 286
PauI	GCGCGC	1 cut(s)	303
PfeI	GAWTC	3 cut(s)	8, 95, 183
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	282, 302
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PteI	GCGCGC	1 cut(s)	303
PvuII	CAGCTG	1 cut(s)	131
SatI	GCNGC	2 cut(s)	281, 301
ScrFI	CCNGG	3 cut(s)	53, 285, 286
SetI	ASST	6 cut(s)	20, 34, 88, 133, 232, 256
SfaNI	GCATC	1 cut(s)	37
SfcI	CTRYAG	1 cut(s)	157
SmaI	CCCGGG	1 cut(s)	286
Sse9I	AATT	2 cut(s)	78, 121
SsiI	CCGC	3 cut(s)	40, 281, 300
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	3 cut(s)	51, 283, 284
TaaI	ACNGT	2 cut(s)	148, 221
TasI	AATT	2 cut(s)	78, 121
TauI	GCSGC	2 cut(s)	283, 303
TfiI	GAWTC	3 cut(s)	8, 95, 183
TscAI	CASTG	1 cut(s)	144
TspDTI	ATGAA	3 cut(s)	141, 190, 257
TspMI	CCCGGG	1 cut(s)	284
TspRI	CASTG	1 cut(s)	144
Van91I	CCANNNNNTGG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	78
XmaI	CCCGGG	1 cut(s)	284
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.