Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Forward (+)

21639711 .. 21640477

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG105500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCAGTCGGAACATCTTCCGAAGAAGGATACATTATTGCTTCAAAGAAGAGTCACTTCCTTTGGAGGTATTCTGCTGGTAGTTGATAGTGATGGTGGCAGGAAATGGAGTTTAACCCATGAAACAGCCTTGGTCACTGGCTCGGTTGGCCAAGCAGCTTCTGATCAGACTGGGGAAAACTTGTATCAGAATTTTGAGACTGGTTCTAACATTGATGTTCTCAGTGCAAAATCCAAGGATCCAACTTACACGATCAGTGCCATGAATCAGAGCTCTGACCAGAATCACCACCTTCTTAAAGCTTTAAAGATTAATTCCATTCCAGACTCGGGTCCCAGCATTCCTCAGATACTCCATCTGATTAGCACTGGAACTGAGGAAAGACCTGCAGAAAGCAAGCGTGGTGCGCTTCAACAGCTAGCCAAAGCTGCTATAACTAGTGACCACTCTATTTGGACCAAGGTTTGTGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

158

Amino Acids

17.08

Weight (kDa)

6.28

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AclWI	GGATC	2 cut(s)	233, 246
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	44, 413
AhlI	ACTAGT	1 cut(s)	437
AluBI	AGCT	6 cut(s)	158, 273, 302, 418, 428, 474
AluI	AGCT	6 cut(s)	158, 273, 302, 418, 428, 474
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	233, 246
AlwNI	CAGNNNCTG	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	328
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	155, 428
ApoI	RAATTY	1 cut(s)	190
AseI	ATTAAT	1 cut(s)	312
Asp700I	GAANNNNTTC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	2 cut(s)	332, 456
AsuHPI	GGTGA	1 cut(s)	278
AsuNHI	GCTAGC	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	328
AvaII	GGWCC	2 cut(s)	332, 456
BalI	TGGCCA	1 cut(s)	150
BamHI	GGATCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	167, 415
BccI	CCATC	2 cut(s)	86, 363
BciVI	GTATCC	1 cut(s)	22
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	191
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	3 cut(s)	419, 438, 475
BfmI	CTRYAG	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	22
BisI	GCNGC	2 cut(s)	156, 429
BlsI	GCNGC	2 cut(s)	157, 430
Bme18I	GGWCC	2 cut(s)	332, 456
BmeT110I	CYCGRG	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	332, 456
BmiI	GGNNCC	3 cut(s)	240, 333, 334
BmrI	ACTGGG	1 cut(s)	180
BmtI	GCTAGC	1 cut(s)	422
BmuI	ACTGGG	1 cut(s)	180
BoxI	GACNNNNGTC	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	129, 234, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	4 cut(s)	142, 175, 205, 373
BseDI	CCNNGG	3 cut(s)	129, 234, 459
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMII	CTCAG	3 cut(s)	235, 359, 366
BseNI	ACTGG	4 cut(s)	142, 175, 205, 373
BseXI	GCAGC	2 cut(s)	167, 415
BseYI	CCCAGC	1 cut(s)	335
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	3 cut(s)	163, 238, 252
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	3 cut(s)	234, 358, 367
BspLI	GGNNCC	3 cut(s)	240, 333, 334
BspMAI	CTGCAG	1 cut(s)	391
BspMI	ACCTGC	1 cut(s)	394
BspOI	GCTAGC	1 cut(s)	422
BspPI	GGATC	2 cut(s)	233, 246
BsrI	ACTGG	4 cut(s)	142, 175, 205, 373
BssECI	CCNNGG	3 cut(s)	129, 234, 459
BssMI	GATC	3 cut(s)	163, 238, 252
BssT1I	CCWWGG	3 cut(s)	129, 234, 459
Bst6I	CTCTTC	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	398, 420
BstDEI	CTNAG	3 cut(s)	221, 345, 375
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	3 cut(s)	166, 241, 255
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	3 cut(s)	163, 238, 252
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 406, 415, 428
BstPAI	GACNNNNGTC	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	167, 415
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuI	GTATCC	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	150
BtsIMutI	CAGTG	4 cut(s)	135, 229, 262, 366
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	2 cut(s)	398, 420
CaiI	CAGNNNCTG	1 cut(s)	161
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	2 cut(s)	332, 456
CspCI	CAANNNNNGTGG	2 cut(s)	434, 469
CviAII	CATG	2 cut(s)	119, 262
DdeI	CTNAG	3 cut(s)	221, 345, 375
DpnI	GATC	3 cut(s)	165, 240, 254
DpnII	GATC	3 cut(s)	163, 238, 252
DraI	TTTAAA	1 cut(s)	306
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	273
Eco130I	CCWWGG	3 cut(s)	129, 234, 459
Eco24I	GRGCYC	1 cut(s)	275
Eco47I	GGWCC	2 cut(s)	332, 456
Eco53kI	GAGCTC	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	332
EcoT14I	CCWWGG	3 cut(s)	129, 234, 459
EcoT38I	GRGCYC	1 cut(s)	275
ErhI	CCWWGG	3 cut(s)	129, 234, 459
FaeI	CATG	2 cut(s)	122, 265
FaiI	YATR	3 cut(s)	120, 263, 434
FalI	AAGNNNNNCTT	2 cut(s)	40, 72
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	2 cut(s)	118, 261
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	156, 429
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	156, 429
FspBI	CTAG	3 cut(s)	419, 438, 475
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	2 cut(s)	156, 429
GsaI	CCCAGC	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	2 cut(s)	122, 265
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	4 cut(s)	51, 265, 283, 326
HphI	GGTGA	1 cut(s)	278
Hpy188I	TCNGA	9 cut(s)	10, 21, 163, 168, 189, 270, 277, 348, 360
Hpy188III	TCNNGA	1 cut(s)	323
HpyAV	CCTTC	2 cut(s)	19, 302
HpyCH4V	TGCA	3 cut(s)	4, 227, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 406, 415, 428
HpyF3I	CTNAG	3 cut(s)	221, 345, 375
Hsp92II	CATG	2 cut(s)	122, 265
HspAI	GCGC	1 cut(s)	407
KflI	GGGWCCC	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	163, 238, 252
Lsp1109I	GCAGC	2 cut(s)	167, 415
MaeI	CTAG	3 cut(s)	419, 438, 475
MaeIII	GTNAC	4 cut(s)	52, 133, 440, 467
MalI	GATC	3 cut(s)	165, 240, 254
MboI	GATC	3 cut(s)	163, 238, 252
MboII	GAAGA	3 cut(s)	8, 34, 60
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	275
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	2 cut(s)	190, 313
MluNI	TGGCCA	1 cut(s)	150
MlyI	GAGTC	2 cut(s)	60, 320
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	3 cut(s)	59, 354, 370
Mox20I	TGGCCA	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	4 cut(s)	113, 297, 305, 312
Msp20I	TGGCCA	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	339
MwoI	GCNNNNNNNGC	4 cut(s)	147, 406, 415, 428
NdeII	GATC	3 cut(s)	163, 238, 252
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	2 cut(s)	122, 265
NlaIV	GGNNCC	3 cut(s)	240, 333, 334
NmuCI	GTSAC	4 cut(s)	52, 133, 440, 467
PctI	GAATGC	1 cut(s)	339
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	265, 283
PkrI	GCNGC	2 cut(s)	157, 430
PleI	GAGTC	2 cut(s)	59, 320
PpsI	GAGTC	2 cut(s)	59, 320
PpuMI	RGGWCCY	1 cut(s)	332
PshAI	GACNNNNGTC	1 cut(s)	330
PshBI	ATTAAT	1 cut(s)	312
Psp124BI	GAGCTC	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	332
PspFI	CCCAGC	1 cut(s)	335
PspN4I	GGNNCC	3 cut(s)	240, 333, 334
PspPI	GGNCC	2 cut(s)	332, 456
PspPPI	RGGWCCY	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	275
SaqAI	TTAA	4 cut(s)	113, 297, 305, 312
SatI	GCNGC	2 cut(s)	156, 429
Sau3AI	GATC	3 cut(s)	163, 238, 252
Sau96I	GGNCC	2 cut(s)	332, 456
SchI	GAGTC	2 cut(s)	60, 320
SduI	GDGCHC	1 cut(s)	275
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	2 cut(s)	332, 456
SpeI	ACTAGT	1 cut(s)	437
Sse9I	AATT	2 cut(s)	190, 313
SspMI	CTAG	3 cut(s)	419, 438, 475
SstI	GAGCTC	1 cut(s)	275
StyI	CCWWGG	3 cut(s)	129, 234, 459
TasI	AATT	2 cut(s)	190, 313
TfiI	GAWTC	2 cut(s)	265, 283
Tru1I	TTAA	4 cut(s)	113, 297, 305, 312
Tru9I	TTAA	4 cut(s)	113, 297, 305, 312
TscAI	CASTG	4 cut(s)	142, 229, 262, 373
TseFI	GTSAC	4 cut(s)	52, 133, 440, 467
TseI	GCWGC	2 cut(s)	155, 428
Tsp45I	GTSAC	4 cut(s)	52, 133, 440, 467
TspDTI	ATGAA	2 cut(s)	135, 278
TspRI	CASTG	4 cut(s)	142, 229, 262, 373
VpaK11BI	GGWCC	2 cut(s)	332, 456
VspI	ATTAAT	1 cut(s)	312
XapI	RAATTY	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	15
XspI	CTAG	3 cut(s)	419, 438, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.