Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Forward (+)

47966348 .. 47974627

Gene Structure 8280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00319800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAACTTTTTGCAAAACAAGAAAGAGCAACAGCGCAAATCTTCCTATGGTCCATCTGATGCAGTCGGAACATCTTCGGAAGAAGGATACGTTATTGCTTCAAAGAAGAGTCACTTCTTTGGGAGGTATTCTGCTGGTTCAGTTGATAGTGATGGTGGCAGGAAATGGAGTTTAACCCATGAAACAGCCTTGGTCACTGGCTCGGTTGGCCAAGCAGCTTCTGATCAGACTGGGGAAAACTTGTATCAGAATTTTGAGACTGGTTCTAACATTGATGTTCTCAGTGCAAAATCCAAGGATCCAACTTACATGATCAGTGCCATGAATCAGAGCTCGGACCTGAATCACCACCTACTTAAAGCTTTAAAGGTTAATTCGATTCCAGACTCGGGTCCCAGCATTCCTCAGATACTCCATCTGATTAGCACTGGAACTGAGGAAAGACCTGCAGAAAGCAAGCGTGGTGCACTTCAACAGCTAGTCGAAGCTGCTATAACTAGTGACCACTCTATTTGGACCAAGTACTTCAATCAAATTTTGACAGTTGTACTTGAGGTGTTGGATGATTTTGACTGCTCCATCTGGGAGCTCTCTCTTTCATTGATTATTGAAAAGCTCAATGACCAGAAAGCTGCAATGGAAGATTCTATTGAGATCATAATTGAGAAGCTGCTGCATGTTACAAAGGACTTAGTTCCCCAGGTTGCAAATGAATCAGAGCACTGCTTGAGTATTGTTCTGTCGCTGTATGATCCATTCAGATGTTTATCAGCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

259

Amino Acids

28.49

Weight (kDa)

5.07

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
AclWI	GGATC	3 cut(s)	293, 306, 746
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	2 cut(s)	250, 534
AfaI	GTAC	2 cut(s)	524, 549
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	4 cut(s)	102, 473, 529, 611
AhlI	ACTAGT	1 cut(s)	497
AjnI	CCWGG	1 cut(s)	699
Alw21I	GWGCWC	4 cut(s)	335, 469, 591, 723
Alw26I	GTCTC	1 cut(s)	251
Alw44I	GTGCAC	1 cut(s)	465
AlwI	GGATC	3 cut(s)	293, 306, 746
AlwNI	CAGNNNCTG	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	388
AoxI	GGCC	1 cut(s)	208
ApaLI	GTGCAC	1 cut(s)	465
ApeKI	GCWGC	5 cut(s)	215, 488, 632, 670, 673
ApoI	RAATTY	2 cut(s)	250, 534
Asp700I	GAANNNNTTC	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	4 cut(s)	50, 337, 392, 516
AsuHPI	GGTGA	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	388
AvaII	GGWCC	4 cut(s)	50, 337, 392, 516
BaeGI	GKGCMC	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	210
BamHI	GGATCC	1 cut(s)	298
BanII	GRGCYC	2 cut(s)	335, 591
Bbv12I	GWGCWC	4 cut(s)	335, 469, 591, 723
BbvI	GCAGC	5 cut(s)	227, 475, 619, 657, 660
BccI	CCATC	4 cut(s)	61, 146, 423, 587
BciT130I	CCWGG	1 cut(s)	701
BciVI	GTATCC	1 cut(s)	80
BclI	TGATCA	2 cut(s)	223, 312
BcoDI	GTCTC	1 cut(s)	251
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	2 cut(s)	479, 498
BfmI	CTRYAG	1 cut(s)	447
BfuAI	ACCTGC	1 cut(s)	454
BfuI	GTATCC	1 cut(s)	80
BisI	GCNGC	5 cut(s)	216, 489, 633, 671, 674
BlsI	GCNGC	5 cut(s)	217, 490, 634, 672, 675
BmcAI	AGTACT	1 cut(s)	524
Bme1390I	CCNGG	1 cut(s)	701
Bme18I	GGWCC	4 cut(s)	50, 337, 392, 516
BmeT110I	CYCGRG	1 cut(s)	388
BmgT120I	GGNCC	4 cut(s)	50, 337, 392, 516
BmiI	GGNNCC	3 cut(s)	300, 393, 394
BmrFI	CCNGG	1 cut(s)	701
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	49
BmuI	ACTGGG	1 cut(s)	240
BoxI	GACNNNNGTC	1 cut(s)	390
BpuEI	CTTGAG	2 cut(s)	572, 748
BsaBI	GATNNNNATC	1 cut(s)	766
BsaJI	CCNNGG	3 cut(s)	189, 294, 699
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	4 cut(s)	202, 235, 265, 433
Bse3DI	GCAATG	1 cut(s)	642
Bse8I	GATNNNNATC	1 cut(s)	766
BseBI	CCWGG	1 cut(s)	701
BseDI	CCNNGG	3 cut(s)	189, 294, 699
BseGI	GGATG	1 cut(s)	568
BseJI	GATNNNNATC	1 cut(s)	766
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	3 cut(s)	295, 419, 426
BseNI	ACTGG	4 cut(s)	202, 235, 265, 433
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	5 cut(s)	227, 475, 619, 657, 660
BseYI	CCCAGC	1 cut(s)	395
BshFI	GGCC	1 cut(s)	210
BsiHKAI	GWGCWC	4 cut(s)	335, 469, 591, 723
BsiHKCI	CYCGRG	1 cut(s)	388
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	210
BsoBI	CYCGRG	1 cut(s)	388
Bsp1286I	GDGCHC	4 cut(s)	335, 469, 591, 723
Bsp143I	GATC	5 cut(s)	223, 298, 312, 654, 751
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	3 cut(s)	294, 418, 427
BspLI	GGNNCC	3 cut(s)	300, 393, 394
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	3 cut(s)	293, 306, 746
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	4 cut(s)	202, 235, 265, 433
BssECI	CCNNGG	3 cut(s)	189, 294, 699
BssMI	GATC	5 cut(s)	223, 298, 312, 654, 751
BssT1I	CCWWGG	2 cut(s)	189, 294
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	458
BstDEI	CTNAG	4 cut(s)	281, 405, 435, 691
BstF5I	GGATG	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	5 cut(s)	226, 301, 315, 657, 754
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	5 cut(s)	223, 298, 312, 654, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	701
BstNSI	RCATGY	1 cut(s)	680
BstPAI	GACNNNNGTC	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	699
BstSFI	CTRYAG	1 cut(s)	447
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	5 cut(s)	227, 475, 619, 657, 660
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	1 cut(s)	721
BtsIMutI	CAGTG	5 cut(s)	195, 289, 322, 426, 721
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	458
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	4 cut(s)	50, 337, 392, 516
Csp6I	GTAC	2 cut(s)	523, 548
CspCI	CAANNNNNGTGG	2 cut(s)	494, 529
CviAII	CATG	4 cut(s)	179, 310, 322, 677
CviQI	GTAC	2 cut(s)	523, 548
DdeI	CTNAG	4 cut(s)	281, 405, 435, 691
DpnI	GATC	5 cut(s)	225, 300, 314, 656, 753
DpnII	GATC	5 cut(s)	223, 298, 312, 654, 751
DraI	TTTAAA	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	2 cut(s)	333, 589
Eco130I	CCWWGG	2 cut(s)	189, 294
Eco24I	GRGCYC	2 cut(s)	335, 591
Eco47I	GGWCC	4 cut(s)	50, 337, 392, 516
Eco53kI	GAGCTC	2 cut(s)	333, 589
Eco88I	CYCGRG	1 cut(s)	388
EcoICRI	GAGCTC	2 cut(s)	333, 589
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	699
EcoT14I	CCWWGG	2 cut(s)	189, 294
EcoT38I	GRGCYC	2 cut(s)	335, 591
ErhI	CCWWGG	2 cut(s)	189, 294
FaeI	CATG	4 cut(s)	182, 313, 325, 680
FaiI	YATR	8 cut(s)	48, 180, 311, 323, 494, 659, 678, 750
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	4 cut(s)	178, 309, 321, 676
FbaI	TGATCA	2 cut(s)	223, 312
Fnu4HI	GCNGC	5 cut(s)	216, 489, 633, 671, 674
FokI	GGATG	1 cut(s)	575
FriOI	GRGCYC	2 cut(s)	335, 591
Fsp4HI	GCNGC	5 cut(s)	216, 489, 633, 671, 674
FspBI	CTAG	2 cut(s)	479, 498
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	5 cut(s)	216, 489, 633, 671, 674
GsaI	CCCAGC	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	182, 313, 325, 680
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	7 cut(s)	109, 325, 343, 379, 386, 644, 713
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	8 cut(s)	13, 62, 287, 449, 467, 635, 676, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	4 cut(s)	281, 405, 435, 691
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	182, 313, 325, 680
HspAI	GCGC	1 cut(s)	34
KflI	GGGWCCC	1 cut(s)	392
Ksp22I	TGATCA	2 cut(s)	223, 312
Kzo9I	GATC	5 cut(s)	223, 298, 312, 654, 751
LmnI	GCTCC	2 cut(s)	581, 586
Lsp1109I	GCAGC	5 cut(s)	227, 475, 619, 657, 660
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	479, 498
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	4 cut(s)	110, 193, 500, 679
MalI	GATC	5 cut(s)	225, 300, 314, 656, 753
MboI	GATC	5 cut(s)	223, 298, 312, 654, 751
MboII	GAAGA	5 cut(s)	33, 66, 92, 118, 653
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	4 cut(s)	335, 469, 591, 723
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	4 cut(s)	250, 373, 534, 660
MluNI	TGGCCA	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	118, 380
MmeI	TCCRAC	3 cut(s)	46, 326, 540
MnlI	CCTC	4 cut(s)	117, 414, 430, 547
Mox20I	TGGCCA	1 cut(s)	210
MroXI	GAANNNNTTC	1 cut(s)	73
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	4 cut(s)	173, 357, 365, 372
MslI	CAYNNNNRTG	1 cut(s)	760
Msp20I	TGGCCA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	773
MspR9I	CCNGG	1 cut(s)	701
Mva1269I	GAATGC	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	701
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	5 cut(s)	223, 298, 312, 654, 751
NlaIII	CATG	4 cut(s)	182, 313, 325, 680
NlaIV	GGNNCC	3 cut(s)	300, 393, 394
NmuCI	GTSAC	3 cut(s)	110, 193, 500
NspI	RCATGY	1 cut(s)	680
PctI	GAATGC	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	73
PfeI	GAWTC	5 cut(s)	325, 343, 379, 644, 713
PkrI	GCNGC	5 cut(s)	217, 490, 634, 672, 675
PleI	GAGTC	2 cut(s)	117, 380
PpsI	GAGTC	2 cut(s)	117, 380
PpuMI	RGGWCCY	1 cut(s)	392
PshAI	GACNNNNGTC	1 cut(s)	390
Psp124BI	GAGCTC	2 cut(s)	335, 591
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	699
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	3 cut(s)	300, 393, 394
PspPI	GGNCC	4 cut(s)	50, 337, 392, 516
PspPPI	RGGWCCY	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	2 cut(s)	524, 549
RsaNI	GTAC	2 cut(s)	523, 548
RseI	CAYNNNNRTG	1 cut(s)	760
SacI	GAGCTC	2 cut(s)	335, 591
SaqAI	TTAA	4 cut(s)	173, 357, 365, 372
SatI	GCNGC	5 cut(s)	216, 489, 633, 671, 674
Sau3AI	GATC	5 cut(s)	223, 298, 312, 654, 751
Sau96I	GGNCC	4 cut(s)	50, 337, 392, 516
ScaI	AGTACT	1 cut(s)	524
SchI	GAGTC	2 cut(s)	118, 380
ScrFI	CCNGG	1 cut(s)	701
SduI	GDGCHC	4 cut(s)	335, 469, 591, 723
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	4 cut(s)	50, 337, 392, 516
SmiMI	CAYNNNNRTG	1 cut(s)	760
SmlI	CTYRAG	2 cut(s)	551, 727
SmoI	CTYRAG	2 cut(s)	551, 727
SpeI	ACTAGT	1 cut(s)	497
Sse9I	AATT	4 cut(s)	250, 373, 534, 660
SspMI	CTAG	2 cut(s)	479, 498
SstI	GAGCTC	2 cut(s)	335, 591
StyD4I	CCNGG	1 cut(s)	699
StyI	CCWWGG	2 cut(s)	189, 294
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	377, 483
TasI	AATT	4 cut(s)	250, 373, 534, 660
TatI	WGTACW	2 cut(s)	522, 547
TfiI	GAWTC	5 cut(s)	325, 343, 379, 644, 713
Tru1I	TTAA	4 cut(s)	173, 357, 365, 372
Tru9I	TTAA	4 cut(s)	173, 357, 365, 372
TscAI	CASTG	5 cut(s)	202, 289, 322, 433, 728
TseFI	GTSAC	3 cut(s)	110, 193, 500
TseI	GCWGC	5 cut(s)	215, 488, 632, 670, 673
Tsp45I	GTSAC	3 cut(s)	110, 193, 500
TspDTI	ATGAA	5 cut(s)	17, 195, 338, 588, 726
TspRI	CASTG	5 cut(s)	202, 289, 322, 433, 728
VneI	GTGCAC	1 cut(s)	465
VpaK11BI	GGWCC	4 cut(s)	50, 337, 392, 516
XapI	RAATTY	2 cut(s)	250, 534
XceI	RCATGY	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	73
XspI	CTAG	2 cut(s)	479, 498
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.