Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Forward (+)

49069636 .. 49071541

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029789

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCATTCAGCTGTTATTGAGTCTTCTATCGGTTCATTTAACATGCATTCAGTATTCACTGGTTCTGGTAATAGTGGCATCCTGAAATTATGGCTTCTGAAGTTGACACCATTGGTCCATGATAAATACAGTAAACTAAAGGAGGCAGCTGTTGCCTGCATGATCTCTGTATACTCCCACTTTGATCCAACACCTGTCTTGAATTTTATTCTTAGCTTGTCAGTTGAAGAACAAAATTCTTTGAGAAGAGCCCGGAAACAAAGAATTCCTGGCATCGAAGTGGACCTTGATAGTGATGGTGGCGGGAAGTGGAGTTTAACCTTGGTCACTGGCTCGGTTGGCCAAGCAGCTTCTGATCAGACTGGGGAAAACTATTTGCGTACTCATTCCCTGGATGTTAATGGGGTTTTGAACTTGGACCATATTGGGGCCGCTGAGAGCATTGTGCATAGCGGAGCTGCCACTGACTTGGACCAGAATTACCACCTACTTAAATCTTTGAAGGTTAATTCCATTCCAGACTCTGGTCCCAGCATTCCTCAGATACTCCATCTCATCAGCACTGGAACTGAGGGAAGTCCCGCAGAAAGTAAGCATGGTGCACATCAACAGCTAATCGGTGCTGCTATAACTAATGACCACTGTATTTGGACCAAGTACTTCAATCAAATCTTCACAGTTGTACTTGAGATGTTGGATGATTTTGACTCCTCCATCCGGGAGCTCTCTCTTTCATTGATTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

249

Amino Acids

26.89

Weight (kDa)

5.67

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	524
AccI	GTMKAC	1 cut(s)	171
AciI	CCGC	4 cut(s)	303, 432, 453, 582
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	3 cut(s)	202, 235, 264
AcuI	CTGAAG	1 cut(s)	119
AfaI	GTAC	3 cut(s)	382, 659, 684
AfiI	CCNNNNNNNGG	3 cut(s)	427, 524, 717
AgsI	TTSAA	5 cut(s)	202, 227, 412, 502, 664
AjnI	CCWGG	2 cut(s)	268, 390
AluBI	AGCT	7 cut(s)	11, 149, 216, 350, 458, 613, 724
AluI	AGCT	7 cut(s)	11, 149, 216, 350, 458, 613, 724
Alw21I	GWGCWC	2 cut(s)	604, 726
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	179
AlwNI	CAGNNNCTG	2 cut(s)	353, 524
AoxI	GGCC	2 cut(s)	340, 429
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	4 cut(s)	146, 347, 458, 623
ApoI	RAATTY	3 cut(s)	202, 235, 264
AspS9I	GGNCC	7 cut(s)	115, 283, 418, 429, 472, 527, 651
AsuC2I	CCSGG	2 cut(s)	253, 719
AvaII	GGWCC	6 cut(s)	115, 283, 418, 472, 527, 651
BaeGI	GKGCMC	1 cut(s)	604
BalI	TGGCCA	1 cut(s)	342
BanII	GRGCYC	2 cut(s)	253, 726
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	604, 726
BbvI	GCAGC	4 cut(s)	158, 359, 445, 610
BccI	CCATC	3 cut(s)	290, 558, 722
BciT130I	CCWGG	2 cut(s)	270, 392
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	2 cut(s)	253, 719
BisI	GCNGC	5 cut(s)	147, 348, 432, 459, 624
BlsI	GCNGC	5 cut(s)	148, 349, 433, 460, 625
BmcAI	AGTACT	1 cut(s)	659
Bme1390I	CCNGG	4 cut(s)	253, 270, 392, 719
Bme18I	GGWCC	6 cut(s)	115, 283, 418, 472, 527, 651
BmgT120I	GGNCC	7 cut(s)	115, 283, 418, 429, 472, 527, 651
BmiI	GGNNCC	2 cut(s)	430, 529
BmrFI	CCNGG	4 cut(s)	253, 270, 392, 719
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	87, 282
BmuI	ACTGGG	1 cut(s)	372
BoxI	GACNNNNGTC	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	2 cut(s)	253, 719
BsaJI	CCNNGG	2 cut(s)	321, 390
Bsc4I	CCNNNNNNNGG	3 cut(s)	427, 524, 717
Bse1I	ACTGG	4 cut(s)	64, 334, 367, 568
BseBI	CCWGG	2 cut(s)	270, 392
BseDI	CCNNGG	2 cut(s)	321, 390
BseGI	GGATG	4 cut(s)	78, 400, 703, 714
BseLI	CCNNNNNNNGG	3 cut(s)	427, 524, 717
BseMII	CTCAG	3 cut(s)	426, 554, 561
BseNI	ACTGG	4 cut(s)	64, 334, 367, 568
BseRI	GAGGAG	1 cut(s)	700
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	4 cut(s)	158, 359, 445, 610
BseYI	CCCAGC	1 cut(s)	530
BshFI	GGCC	2 cut(s)	342, 431
BsiHKAI	GWGCWC	2 cut(s)	604, 726
BsiSI	CCGG	2 cut(s)	253, 718
BslFI	GGGAC	2 cut(s)	513, 564
BslI	CCNNNNNNNGG	3 cut(s)	427, 524, 717
BsmFI	GGGAC	2 cut(s)	513, 564
BsmI	GAATGC	3 cut(s)	4, 46, 534
BsnI	GGCC	2 cut(s)	342, 431
Bsp1286I	GDGCHC	3 cut(s)	253, 604, 726
Bsp143I	GATC	3 cut(s)	162, 184, 355
BspACI	CCGC	4 cut(s)	303, 432, 453, 582
BspANI	GGCC	2 cut(s)	342, 431
BspCNI	CTCAG	3 cut(s)	427, 553, 562
BspLI	GGNNCC	2 cut(s)	430, 529
BspPI	GGATC	1 cut(s)	179
BspQI	GCTCTTC	1 cut(s)	241
BsrI	ACTGG	4 cut(s)	64, 334, 367, 568
BssECI	CCNNGG	2 cut(s)	321, 390
BssMI	GATC	3 cut(s)	162, 184, 355
BssNAI	GTATAC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	321
Bst1107I	GTATAC	1 cut(s)	172
Bst2UI	CCWGG	2 cut(s)	270, 392
Bst4CI	ACNGT	3 cut(s)	131, 644, 679
Bst6I	CTCTTC	1 cut(s)	241
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	4 cut(s)	212, 435, 540, 570
BstF5I	GGATG	4 cut(s)	78, 400, 703, 714
BstKTI	GATC	3 cut(s)	165, 187, 358
BstMBI	GATC	3 cut(s)	162, 184, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 339
BstNI	CCWGG	2 cut(s)	270, 392
BstNSI	RCATGY	1 cut(s)	46
BstPAI	GACNNNNGTC	1 cut(s)	525
BstSCI	CCNGG	4 cut(s)	251, 268, 390, 717
BstSLI	GKGCMC	1 cut(s)	604
BstV1I	GCAGC	4 cut(s)	158, 359, 445, 610
BstV2I	GAAGAC	1 cut(s)	15
BstXI	CCANNNNNNTGG	1 cut(s)	469
BstZ17I	GTATAC	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	342, 431
BtsCI	GGATG	4 cut(s)	78, 400, 703, 714
BtsIMutI	CAGTG	5 cut(s)	57, 327, 462, 561, 640
Cac8I	GCNNGC	1 cut(s)	157
CaiI	CAGNNNCTG	2 cut(s)	353, 524
Cfr13I	GGNCC	7 cut(s)	115, 283, 418, 429, 472, 527, 651
Csp6I	GTAC	3 cut(s)	381, 658, 683
CspCI	CAANNNNNGTGG	2 cut(s)	629, 664
CviAII	CATG	4 cut(s)	43, 119, 160, 596
CviQI	GTAC	3 cut(s)	381, 658, 683
DdeI	CTNAG	4 cut(s)	212, 435, 540, 570
DpnI	GATC	3 cut(s)	164, 186, 357
DpnII	GATC	3 cut(s)	162, 184, 355
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	724
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	2 cut(s)	253, 726
Eco47I	GGWCC	6 cut(s)	115, 283, 418, 472, 527, 651
Eco53kI	GAGCTC	1 cut(s)	724
Eco57I	CTGAAG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	724
EcoRI	GAATTC	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	268, 390
EcoT14I	CCWWGG	1 cut(s)	321
EcoT22I	ATGCAT	2 cut(s)	6, 48
EcoT38I	GRGCYC	2 cut(s)	253, 726
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	4 cut(s)	46, 122, 163, 599
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	2 cut(s)	513, 564
FatI	CATG	4 cut(s)	42, 118, 159, 595
FauI	CCCGC	2 cut(s)	296, 589
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	5 cut(s)	147, 348, 432, 459, 624
FokI	GGATG	4 cut(s)	65, 407, 701, 710
FriOI	GRGCYC	2 cut(s)	253, 726
Fsp4HI	GCNGC	5 cut(s)	147, 348, 432, 459, 624
GluI	GCNGC	5 cut(s)	147, 348, 432, 459, 624
GsaI	CCCAGC	1 cut(s)	534
HaeIII	GGCC	2 cut(s)	342, 431
HapII	CCGG	2 cut(s)	253, 718
Hin1II	CATG	4 cut(s)	46, 122, 163, 599
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	3 cut(s)	20, 521, 707
HpaII	CCGG	2 cut(s)	253, 718
Hpy166II	GTNNAC	5 cut(s)	105, 134, 172, 283, 602
Hpy188I	TCNGA	4 cut(s)	99, 355, 360, 543
Hpy188III	TCNNGA	3 cut(s)	82, 199, 518
Hpy8I	GTNNAC	5 cut(s)	105, 134, 172, 283, 602
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	3 cut(s)	131, 644, 679
HpyCH4V	TGCA	5 cut(s)	4, 46, 159, 448, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 339
HpyF3I	CTNAG	4 cut(s)	212, 435, 540, 570
Hsp92II	CATG	4 cut(s)	46, 122, 163, 599
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	162, 184, 355
LguI	GCTCTTC	1 cut(s)	241
LmnI	GCTCC	2 cut(s)	455, 721
Lsp1109I	GCAGC	4 cut(s)	158, 359, 445, 610
LweI	GCATC	2 cut(s)	87, 282
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	3 cut(s)	164, 186, 357
MboI	GATC	3 cut(s)	162, 184, 355
MboII	GAAGA	4 cut(s)	15, 239, 258, 664
MhlI	GDGCHC	3 cut(s)	253, 604, 726
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	6 cut(s)	86, 202, 235, 264, 478, 508
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	3 cut(s)	29, 515, 701
MmeI	TCCRAC	2 cut(s)	212, 675
MnlI	CCTC	4 cut(s)	136, 549, 565, 721
Mox20I	TGGCCA	1 cut(s)	342
Mph1103I	ATGCAT	2 cut(s)	6, 48
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	5 cut(s)	39, 317, 399, 492, 507
MslI	CAYNNNNRTG	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	342
MspA1I	CMGCKG	3 cut(s)	11, 149, 434
MspI	CCGG	2 cut(s)	253, 718
MspR9I	CCNGG	4 cut(s)	253, 270, 392, 719
Mva1269I	GAATGC	3 cut(s)	4, 46, 534
MvaI	CCWGG	2 cut(s)	270, 392
MwoI	GCNNNNNNNGC	2 cut(s)	152, 339
NciI	CCSGG	2 cut(s)	253, 719
NdeII	GATC	3 cut(s)	162, 184, 355
NlaIII	CATG	4 cut(s)	46, 122, 163, 599
NlaIV	GGNNCC	2 cut(s)	430, 529
NmuCI	GTSAC	1 cut(s)	325
NsiI	ATGCAT	2 cut(s)	6, 48
NspI	RCATGY	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	241
PctI	GAATGC	3 cut(s)	4, 46, 534
PflMI	CCANNNNNTGG	1 cut(s)	524
PfoI	TCCNGGA	1 cut(s)	717
PkrI	GCNGC	5 cut(s)	148, 349, 433, 460, 625
PleI	GAGTC	3 cut(s)	28, 515, 701
PpsI	GAGTC	3 cut(s)	28, 515, 701
PshAI	GACNNNNGTC	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	726
Psp6I	CCWGG	2 cut(s)	268, 390
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	2 cut(s)	268, 390
PspN4I	GGNNCC	2 cut(s)	430, 529
PspPI	GGNCC	7 cut(s)	115, 283, 418, 429, 472, 527, 651
PstNI	CAGNNNCTG	2 cut(s)	353, 524
PvuII	CAGCTG	2 cut(s)	11, 149
RsaI	GTAC	3 cut(s)	382, 659, 684
RsaNI	GTAC	3 cut(s)	381, 658, 683
RseI	CAYNNNNRTG	1 cut(s)	278
SacI	GAGCTC	1 cut(s)	726
SapI	GCTCTTC	1 cut(s)	241
SaqAI	TTAA	5 cut(s)	39, 317, 399, 492, 507
SatI	GCNGC	5 cut(s)	147, 348, 432, 459, 624
Sau3AI	GATC	3 cut(s)	162, 184, 355
Sau96I	GGNCC	7 cut(s)	115, 283, 418, 429, 472, 527, 651
ScaI	AGTACT	1 cut(s)	659
SchI	GAGTC	3 cut(s)	29, 515, 701
ScrFI	CCNGG	4 cut(s)	253, 270, 392, 719
SduI	GDGCHC	3 cut(s)	253, 604, 726
SfaNI	GCATC	2 cut(s)	87, 282
SinI	GGWCC	6 cut(s)	115, 283, 418, 472, 527, 651
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
Sse9I	AATT	6 cut(s)	86, 202, 235, 264, 478, 508
SsiI	CCGC	4 cut(s)	303, 432, 453, 582
SstI	GAGCTC	1 cut(s)	726
StyD4I	CCNGG	4 cut(s)	251, 268, 390, 717
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	3 cut(s)	131, 644, 679
TaqI	TCGA	1 cut(s)	276
TasI	AATT	6 cut(s)	86, 202, 235, 264, 478, 508
TatI	WGTACW	2 cut(s)	657, 682
TauI	GCSGC	1 cut(s)	434
Tru1I	TTAA	5 cut(s)	39, 317, 399, 492, 507
Tru9I	TTAA	5 cut(s)	39, 317, 399, 492, 507
TscAI	CASTG	5 cut(s)	64, 334, 469, 568, 647
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	4 cut(s)	146, 347, 458, 623
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	24, 723
TspRI	CASTG	5 cut(s)	64, 334, 469, 568, 647
Van91I	CCANNNNNTGG	1 cut(s)	524
VneI	GTGCAC	1 cut(s)	600
VpaK11BI	GGWCC	6 cut(s)	115, 283, 418, 472, 527, 651
XapI	RAATTY	3 cut(s)	202, 235, 264
XceI	RCATGY	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	171
ZrmI	AGTACT	1 cut(s)	659
Zsp2I	ATGCAT	2 cut(s)	6, 48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.