Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017770.1

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1369

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017770.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggaggaagcgcttgaactcgcacgcgccaaggacaccaaggagcgcatggccggagtggagcgcctccaccagcttctcgaagcttccaggaagagcctcacttcggccgaggtcactgcgctcgtcgattgctgcatggatcttctcaaggacaacaacttccgagtctcccagggctctcttcaggccctcgcctccgccgccgtcctctccggcgaccatctcaagcttcatttcaatgcgcttgtccccgccgtcgtcgagcgcctcggcgatgccaaacagcccgttcgcgacgctgcccggaggctcctgcttactcttatggaggtgtcttctccaacgctcattgttgaaagagcaggttcttatgcctgggcacacaaaagttggagagttagagaggagtttgcacgaactgtcacctcagcaattggactttttgcatcaaccgaacttcctcttcagcgtgccatacttcctccgattctgcagatgttaagtgattcaaatcccggtgtaagggacgcagctatattgtgcattgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

184

Amino Acids

20.17

Weight (kDa)

6.44

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
AccII	CGCG	2 cut(s)	27, 297
AciI	CCGC	3 cut(s)	201, 204, 255
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	2 cut(s)	51, 108
AcuI	CTGAAG	2 cut(s)	170, 452
AfeI	AGCGCT	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	106, 525
AgsI	TTSAA	4 cut(s)	17, 241, 359, 513
AjnI	CCWGG	3 cut(s)	89, 174, 377
AluBI	AGCT	4 cut(s)	76, 86, 232, 536
AluI	AGCT	4 cut(s)	76, 86, 232, 536
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	150
Aor51HI	AGCGCT	1 cut(s)	12
AoxI	GGCC	3 cut(s)	51, 108, 189
ApeKI	GCWGC	3 cut(s)	135, 302, 533
AspLEI	GCGC	7 cut(s)	13, 29, 48, 66, 124, 247, 270
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	2 cut(s)	307, 519
AsuHPI	GGTGA	1 cut(s)	418
BaeGI	GKGCMC	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	330
BbvCI	CCTCAGC	1 cut(s)	430
BbvI	GCAGC	3 cut(s)	122, 289, 545
BccI	CCATC	1 cut(s)	231
BceAI	ACGGC	2 cut(s)	191, 242
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	3 cut(s)	91, 176, 379
BcnI	CCSGG	2 cut(s)	307, 519
BcoDI	GTCTC	1 cut(s)	175
BfmI	CTRYAG	1 cut(s)	494
BfoI	RGCGCY	3 cut(s)	14, 67, 271
BfuAI	ACCTGC	1 cut(s)	356
BisI	GCNGC	4 cut(s)	136, 204, 303, 534
BlsI	GCNGC	4 cut(s)	137, 205, 304, 535
Bme1390I	CCNGG	5 cut(s)	91, 176, 307, 379, 519
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	5 cut(s)	91, 176, 307, 379, 519
BmsI	GCATC	2 cut(s)	268, 458
BpiI	GAAGAC	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	430
BpuEI	CTTGAG	2 cut(s)	134, 212
BpuMI	CCSGG	2 cut(s)	307, 519
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	7 cut(s)	30, 39, 111, 174, 175, 271, 378
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 525
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	3 cut(s)	91, 176, 379
BseDI	CCNNGG	7 cut(s)	30, 39, 111, 174, 175, 271, 378
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	2 cut(s)	106, 525
BseMII	CTCAG	1 cut(s)	444
BseRI	GAGGAG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	385
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	3 cut(s)	122, 289, 545
Bsh1236I	CGCG	2 cut(s)	27, 297
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	53, 110, 191
BsiEI	CGRYCG	1 cut(s)	111
BsiSI	CCGG	4 cut(s)	54, 216, 307, 519
BslFI	GGGAC	2 cut(s)	236, 542
BslI	CCNNNNNNNGG	2 cut(s)	106, 525
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	2 cut(s)	236, 542
BsnI	GGCC	3 cut(s)	53, 110, 191
Bsp1286I	GDGCHC	2 cut(s)	182, 385
Bsp143I	GATC	1 cut(s)	142
Bsp68I	TCGCGA	1 cut(s)	297
BspACI	CCGC	3 cut(s)	201, 204, 255
BspANI	GGCC	3 cut(s)	53, 110, 191
BspCNI	CTCAG	1 cut(s)	443
BspFNI	CGCG	2 cut(s)	27, 297
BspLI	GGNNCC	1 cut(s)	314
BspMAI	CTGCAG	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	89
BssECI	CCNNGG	7 cut(s)	30, 39, 111, 174, 175, 271, 378
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	2 cut(s)	30, 39
Bst2UI	CCWGG	3 cut(s)	91, 176, 379
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	3 cut(s)	89, 189, 471
BstC8I	GCNNGC	2 cut(s)	25, 474
BstDEI	CTNAG	1 cut(s)	430
BstFNI	CGCG	2 cut(s)	27, 297
BstH2I	RGCGCY	3 cut(s)	14, 67, 271
BstHHI	GCGC	7 cut(s)	13, 29, 48, 66, 124, 247, 270
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	142
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	3 cut(s)	91, 176, 379
BstSCI	CCNGG	5 cut(s)	89, 174, 305, 377, 517
BstSFI	CTRYAG	1 cut(s)	494
BstSLI	GKGCMC	1 cut(s)	385
BstUI	CGCG	2 cut(s)	27, 297
BstV1I	GCAGC	3 cut(s)	122, 289, 545
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BstZI	CGGCCG	1 cut(s)	108
BsuRI	GGCC	3 cut(s)	53, 110, 191
BtgZI	GCGATG	1 cut(s)	291
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
BtuMI	TCGCGA	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	25, 474
CfoI	GCGC	7 cut(s)	13, 29, 48, 66, 124, 247, 270
Cfr13I	GGNCC	1 cut(s)	190
CseI	GACGC	2 cut(s)	308, 539
CviAII	CATG	2 cut(s)	49, 139
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	2 cut(s)	51, 108
EagI	CGGCCG	1 cut(s)	108
Eam1104I	CTCTTC	3 cut(s)	89, 189, 471
EarI	CTCTTC	3 cut(s)	89, 189, 471
EciI	GGCGGA	1 cut(s)	190
EclXI	CGGCCG	1 cut(s)	108
Eco130I	CCWWGG	2 cut(s)	30, 39
Eco24I	GRGCYC	1 cut(s)	182
Eco47III	AGCGCT	1 cut(s)	12
Eco52I	CGGCCG	1 cut(s)	108
Eco57I	CTGAAG	2 cut(s)	170, 452
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	3 cut(s)	89, 174, 377
EcoT14I	CCWWGG	2 cut(s)	30, 39
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	2 cut(s)	30, 39
FaeI	CATG	2 cut(s)	52, 142
FaiI	YATR	6 cut(s)	50, 140, 329, 375, 479, 539
FaqI	GGGAC	2 cut(s)	236, 542
FatI	CATG	2 cut(s)	48, 138
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	4 cut(s)	136, 204, 303, 534
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	4 cut(s)	136, 204, 303, 534
GlaI	GCGC	7 cut(s)	12, 28, 47, 65, 123, 246, 269
GluI	GCNGC	4 cut(s)	136, 204, 303, 534
HaeII	RGCGCY	3 cut(s)	14, 67, 271
HaeIII	GGCC	3 cut(s)	53, 110, 191
HapII	CCGG	4 cut(s)	54, 216, 307, 519
HgaI	GACGC	2 cut(s)	308, 539
HhaI	GCGC	7 cut(s)	13, 29, 48, 66, 124, 247, 270
Hin1II	CATG	2 cut(s)	52, 142
Hin6I	GCGC	7 cut(s)	11, 27, 46, 64, 122, 245, 268
HinP1I	GCGC	7 cut(s)	11, 27, 46, 64, 122, 245, 268
HindIII	AAGCTT	2 cut(s)	84, 230
HinfI	GANTC	3 cut(s)	168, 490, 509
HpaII	CCGG	4 cut(s)	54, 216, 307, 519
HphI	GGTGA	1 cut(s)	418
Hpy188I	TCNGA	2 cut(s)	167, 489
Hpy188III	TCNNGA	2 cut(s)	80, 296
Hpy99I	CGWCG	4 cut(s)	131, 263, 266, 302
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4V	TGCA	5 cut(s)	138, 416, 449, 496, 546
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	1 cut(s)	430
Hsp92II	CATG	2 cut(s)	52, 142
HspAI	GCGC	7 cut(s)	11, 27, 46, 64, 122, 245, 268
Kzo9I	GATC	1 cut(s)	142
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	3 cut(s)	43, 61, 318
Lsp1109I	GCAGC	3 cut(s)	122, 289, 545
LweI	GCATC	2 cut(s)	268, 458
MaeIII	GTNAC	2 cut(s)	115, 424
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	5 cut(s)	106, 137, 176, 330, 458
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	182, 385
MluCI	AATT	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	2 cut(s)	368, 374
MseI	TTAA	1 cut(s)	503
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	4 cut(s)	54, 216, 307, 519
MspR9I	CCNGG	5 cut(s)	91, 176, 307, 379, 519
MunI	CAATTG	1 cut(s)	435
MvaI	CCWGG	3 cut(s)	91, 176, 379
MvnI	CGCG	2 cut(s)	27, 297
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	2 cut(s)	307, 519
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	52, 142
NlaIV	GGNNCC	1 cut(s)	314
NmeAIII	GCCGAG	2 cut(s)	136, 252
NmuCI	GTSAC	2 cut(s)	115, 424
NruI	TCGCGA	1 cut(s)	297
PasI	CCCWGGG	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	490, 509
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	4 cut(s)	137, 205, 304, 535
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	3 cut(s)	89, 174, 377
PspGI	CCWGG	3 cut(s)	89, 174, 377
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	190
PstI	CTGCAG	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	142
RruI	TCGCGA	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	4 cut(s)	136, 204, 303, 534
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	5 cut(s)	91, 176, 307, 379, 519
SduI	GDGCHC	2 cut(s)	182, 385
SetI	ASST	8 cut(s)	78, 88, 117, 234, 336, 370, 431, 538
SfaNI	GCATC	2 cut(s)	268, 458
SfcI	CTRYAG	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	149, 227
SmoI	CTYRAG	2 cut(s)	149, 227
Sse9I	AATT	1 cut(s)	435
SsiI	CCGC	3 cut(s)	201, 204, 255
StyD4I	CCNGG	5 cut(s)	89, 174, 305, 377, 517
StyI	CCWWGG	2 cut(s)	30, 39
TaaI	ACNGT	1 cut(s)	424
TaqI	TCGA	3 cut(s)	81, 129, 264
TasI	AATT	1 cut(s)	435
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	490, 509
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	115, 424
TseI	GCWGC	3 cut(s)	135, 302, 533
Tsp45I	GTSAC	2 cut(s)	115, 424
TspDTI	ATGAA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.