Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

20520399 .. 20522328

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55989

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGACCACTCTATTTGGACCAAGGTTTGTTATAACTATGCAGTACTGCAATGAAATTTTGACAGTTGTACTTGAGATGTTGGATGATTTTGACTCCTCCATCCGGGAGCTCCCTCTTTCATTGATTATTGAAAGGCTTAAGAACCAGAAAGCTGCAATGGAAGATTCTATTGAGATCATAATTGAGAAGCTGATGCATGTTACAAAGGACTTAATTCCCCAGGTTGCAAATGAATCAGAGCACTGCTCGAGTATTGTTCTGTCGCTTTATGATCCATTCAGATGTTTAAGTGTATGTATCCATTCCGGTTCTCCACCCAGCCTTGCGAAATTTTTATCAGCACTGAGTAAAAGAAGTCATTGGCTGAACACTAATATGAAAACATTAGAAAAATTTTGTGTCAACTTTTGGCTGTGTTTGGTAAACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

143

Amino Acids

16.37

Weight (kDa)

5.77

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AclWI	GGATC	1 cut(s)	266
AcsI	RAATTY	3 cut(s)	54, 329, 392
AfaI	GTAC	2 cut(s)	44, 69
AfiI	CCNNNNNNNGG	1 cut(s)	102
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	109, 152, 190
AluI	AGCT	3 cut(s)	109, 152, 190
Alw21I	GWGCWC	2 cut(s)	111, 243
AlwI	GGATC	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	3 cut(s)	54, 329, 392
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	111, 243
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	308
BcnI	CCSGG	1 cut(s)	104
BfrI	CTTAAG	1 cut(s)	137
BfuI	GTATCC	1 cut(s)	308
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmcAI	AGTACT	1 cut(s)	44
Bme1390I	CCNGG	2 cut(s)	104, 221
Bme18I	GGWCC	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	17
BmrFI	CCNGG	2 cut(s)	104, 221
BmsI	GCATC	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	20, 219
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse3DI	GCAATG	2 cut(s)	55, 162
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	20, 219
BseGI	GGATG	2 cut(s)	88, 99
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMI	GCAATG	2 cut(s)	55, 162
BseMII	CTCAG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	139
BseYI	CCCAGC	1 cut(s)	317
BsiHKAI	GWGCWC	2 cut(s)	111, 243
BsiHKCI	CYCGRG	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	103, 306
BslI	CCNNNNNNNGG	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	247
Bsp1286I	GDGCHC	2 cut(s)	111, 243
Bsp143I	GATC	2 cut(s)	174, 271
BspCNI	CTCAG	1 cut(s)	336
BspPI	GGATC	1 cut(s)	266
BspTI	CTTAAG	1 cut(s)	137
BsrDI	GCAATG	2 cut(s)	55, 162
BssECI	CCNNGG	2 cut(s)	20, 219
BssMI	GATC	2 cut(s)	174, 271
BssT1I	CCWWGG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	88, 99
BstKTI	GATC	2 cut(s)	177, 274
BstMBI	GATC	2 cut(s)	174, 271
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	102, 219
BstV1I	GCAGC	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	308
BtsCI	GGATG	2 cut(s)	88, 99
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	241, 341
Cfr13I	GGNCC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	43, 68
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	7 cut(s)	109, 136, 152, 190, 321, 364, 412
CviKI_1	RGCY	7 cut(s)	109, 136, 152, 190, 321, 364, 412
CviQI	GTAC	2 cut(s)	43, 68
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	2 cut(s)	176, 273
DpnII	GATC	2 cut(s)	174, 271
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	20
EcoT22I	ATGCAT	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	1 cut(s)	200
FaiI	YATR	7 cut(s)	32, 38, 179, 198, 270, 295, 377
FatI	CATG	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	2 cut(s)	86, 95
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	153
GsaI	CCCAGC	1 cut(s)	321
HapII	CCGG	2 cut(s)	103, 306
Hin1II	CATG	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	3 cut(s)	92, 164, 233
HpaII	CCGG	2 cut(s)	103, 306
Hpy166II	GTNNAC	2 cut(s)	403, 424
Hpy188I	TCNGA	2 cut(s)	238, 281
Hpy8I	GTNNAC	2 cut(s)	403, 424
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	5 cut(s)	40, 48, 155, 196, 227
HpyF3I	CTNAG	1 cut(s)	344
Hsp92II	CATG	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	174, 271
LmnI	GCTCC	2 cut(s)	106, 114
LpnPI	CCDG	6 cut(s)	116, 158, 206, 233, 319, 331
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	176, 273
MboI	GATC	2 cut(s)	174, 271
MboII	GAAGA	1 cut(s)	173
MhlI	GDGCHC	2 cut(s)	111, 243
MluCI	AATT	5 cut(s)	54, 180, 213, 329, 392
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	2 cut(s)	106, 123
Mph1103I	ATGCAT	1 cut(s)	198
MseI	TTAA	4 cut(s)	138, 212, 287, 430
MslI	CAYNNNNRTG	2 cut(s)	280, 374
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	2 cut(s)	103, 306
MspR9I	CCNGG	2 cut(s)	104, 221
MvaI	CCWGG	1 cut(s)	221
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	2 cut(s)	174, 271
NlaIII	CATG	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	198
NspI	RCATGY	1 cut(s)	200
PaeR7I	CTCGAG	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	164, 233
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PsiI	TTATAA	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	17
PspXI	VCTCGAGB	1 cut(s)	247
RsaI	GTAC	2 cut(s)	44, 69
RsaNI	GTAC	2 cut(s)	43, 68
RseI	CAYNNNNRTG	2 cut(s)	280, 374
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	4 cut(s)	138, 212, 287, 430
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	174, 271
Sau96I	GGNCC	1 cut(s)	17
ScaI	AGTACT	1 cut(s)	44
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	104, 221
SduI	GDGCHC	2 cut(s)	111, 243
SetI	ASST	6 cut(s)	26, 111, 154, 192, 225, 429
SfaNI	GCATC	1 cut(s)	183
Sfr274I	CTCGAG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	17
SlaI	CTCGAG	1 cut(s)	247
SmiMI	CAYNNNNRTG	2 cut(s)	280, 374
SmlI	CTYRAG	3 cut(s)	71, 137, 247
SmoI	CTYRAG	3 cut(s)	71, 137, 247
Sse9I	AATT	5 cut(s)	54, 180, 213, 329, 392
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	102, 219
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	248
TasI	AATT	5 cut(s)	54, 180, 213, 329, 392
TatI	WGTACW	2 cut(s)	42, 67
TfiI	GAWTC	2 cut(s)	164, 233
Tru1I	TTAA	4 cut(s)	138, 212, 287, 430
Tru9I	TTAA	4 cut(s)	138, 212, 287, 430
TscAI	CASTG	2 cut(s)	248, 348
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	4 cut(s)	66, 108, 246, 392
TspRI	CASTG	2 cut(s)	248, 348
Vha464I	CTTAAG	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	3 cut(s)	54, 329, 392
XceI	RCATGY	1 cut(s)	200
XhoI	CTCGAG	1 cut(s)	247
ZrmI	AGTACT	1 cut(s)	44
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.