Rw1G008750

CLASP N terminal

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
19141510 .. 19159561
18052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008750.1

Sequence Viewer

Length: 1005 bp
ATGACAGACCAGACGTTGCTGAGATTACAGGAAGTATGCCGCGTGCATGTCATCAAAAGAGACTTGGGTGAACCGGACAGAATTGTCAGAAAGCTGTTGCAGGAAGATCACATTAAAATTGCCAAAGCCAAGAAGAAAGTACTAGAGATAGAGTTGTGCTCATCTGAGGAAGAGCTTGATACTGAGGCATGTTTTCTTACCAGCCTTCGTTATCTCCAGATCTATCTGCTTCAGAAAATGTTGTTGGTGACATTGGCTACATTGCACTTGAGCGTGTCCTACCAGGGTTTGATAAGACAGACTGACATCCATGATTTCGGAGTGCTGCTGTGGGAGCTCTTCACAGGAAGGAAACCAGGAAGGAAACCTTCCTATAGACCAAGGGAAGAGCAATCACTGGTGAAATGGGCTTCATTGGGGCTTGATGATACAGAGAATCTGGCTGAGATGATCGATCCAGGCATTAAAAAGACATGTTCCTCCAAGGCTCTCTCAGATTTTGCTGATATTATCTCCGGCTGTACACAGCCAATGAAGGAGTTCCGACCACTAATGTCTGAAGTTGTGAGCTCTCTAACACAACTAATACAGAAAAGCAAGAGGCGGAGGAAAGAGAAGGTTCCAGTGAAAATCCTGGGGAAAACCGAAAGGTTTACCGCTGGAACTGAGGGAAGTCCTGCAGAAAGTAAGCATGGTGCACTTCAACAGCTAATGGGTGCTGCTATAACTAATGACCACTCTATTTGGACCAAGTACTTCAATCAAATTTTGACAGTTGTACTAGAGATGTTGGATGATTTTGACTCCTCCATCCGGGAGCTCTCTCTTTCATTGATTATTGAAAAGCTTAAGAACCAGAAAGCTGCAATGGAAGATTCTATTGAGATCATAATTAAGAAGCTGCTGCATGTTACAGAGGACTTAATTCCCCAGGTTGCAAATGAATCAGAGCACTGCTCTGGTATTGTTCTGTCGCTGTATGATCCATTCAGATGGTTCTTTTAG

Protein Analysis

334

Amino Acids

38.16

Weight (kDa)

6.73

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 94 - 192 4.4e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AccII CGCG 1 cut(s) 42
AciI CCGC 3 cut(s) 40, 604, 657
AclWI GGATC 2 cut(s) 449, 977
AcsI RAATTY 1 cut(s) 765
AcuI CTGAAG 2 cut(s) 215, 579
AfaI GTAC 4 cut(s) 141, 523, 755, 780
AfiI CCNNNNNNNGG 1 cut(s) 813
AflII CTTAAG 1 cut(s) 848
AflIII ACRYGT 1 cut(s) 473
AgsI TTSAA 3 cut(s) 704, 760, 842
AjnI CCWGG 5 cut(s) 282, 355, 457, 633, 930
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 9 cut(s) 94, 175, 337, 570, 709, 820, 847, 863, 901
AluI AGCT 9 cut(s) 94, 175, 337, 570, 709, 820, 847, 863, 901
Alw21I GWGCWC 6 cut(s) 161, 339, 572, 700, 822, 954
Alw26I GTCTC 1 cut(s) 54
Alw44I GTGCAC 1 cut(s) 696
AlwI GGATC 2 cut(s) 449, 977
ApaLI GTGCAC 1 cut(s) 696
ApeKI GCWGC 5 cut(s) 325, 719, 863, 901, 904
ApoI RAATTY 1 cut(s) 765
Asp700I GAANNNNTTC 1 cut(s) 539
AspS9I GGNCC 1 cut(s) 747
AsuC2I CCSGG 1 cut(s) 815
AsuHPI GGTGA 3 cut(s) 80, 259, 412
AvaII GGWCC 1 cut(s) 747
BaeGI GKGCMC 1 cut(s) 700
BanII GRGCYC 3 cut(s) 339, 572, 822
Bbv12I GWGCWC 6 cut(s) 161, 339, 572, 700, 822, 954
BbvI GCAGC 5 cut(s) 312, 706, 850, 888, 891
BccI CCATC 2 cut(s) 818, 987
BciT130I CCWGG 5 cut(s) 284, 357, 459, 635, 932
BcnI CCSGG 1 cut(s) 815
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 2 cut(s) 143, 782
BfmI CTRYAG 2 cut(s) 373, 678
BfrI CTTAAG 1 cut(s) 848
BglII AGATCT 1 cut(s) 219
BisI GCNGC 6 cut(s) 40, 326, 720, 864, 902, 905
BlsI GCNGC 6 cut(s) 41, 327, 721, 865, 903, 906
BmcAI AGTACT 2 cut(s) 141, 755
Bme1390I CCNGG 6 cut(s) 284, 357, 459, 635, 815, 932
Bme18I GGWCC 1 cut(s) 747
BmgT120I GGNCC 1 cut(s) 747
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 6 cut(s) 284, 357, 459, 635, 815, 932
BplI GAGNNNNNCTC 4 cut(s) 143, 175, 941, 973
BpmI CTGGAG 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 815
Bsa29I ATCGAT 1 cut(s) 453
BsaJI CCNNGG 5 cut(s) 283, 380, 483, 634, 930
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 813
Bse1I ACTGG 2 cut(s) 402, 623
Bse3DI GCAATG 2 cut(s) 260, 873
BseBI CCWGG 5 cut(s) 284, 357, 459, 635, 932
BseCI ATCGAT 1 cut(s) 453
BseDI CCNNGG 5 cut(s) 283, 380, 483, 634, 930
BseGI GGATG 3 cut(s) 306, 799, 810
BseLI CCNNNNNNNGG 1 cut(s) 813
BseMI GCAATG 2 cut(s) 260, 873
BseMII CTCAG 6 cut(s) 11, 156, 174, 435, 507, 657
BseNI ACTGG 2 cut(s) 402, 623
BseRI GAGGAG 1 cut(s) 796
BseSI GKGCMC 1 cut(s) 700
BseXI GCAGC 5 cut(s) 312, 706, 850, 888, 891
Bsh1236I CGCG 1 cut(s) 42
BshVI ATCGAT 1 cut(s) 453
BsiHKAI GWGCWC 6 cut(s) 161, 339, 572, 700, 822, 954
BsiSI CCGG 3 cut(s) 74, 516, 814
BslI CCNNNNNNNGG 1 cut(s) 813
BsmAI GTCTC 1 cut(s) 54
Bsp1286I GDGCHC 6 cut(s) 161, 339, 572, 700, 822, 954
Bsp1407I TGTACA 1 cut(s) 521
Bsp143I GATC 6 cut(s) 106, 219, 450, 454, 885, 982
BspACI CCGC 3 cut(s) 40, 604, 657
BspCNI CTCAG 6 cut(s) 12, 157, 175, 436, 506, 658
BspDI ATCGAT 1 cut(s) 453
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 621
BspMAI CTGCAG 1 cut(s) 682
BspPI GGATC 2 cut(s) 449, 977
BspQI GCTCTTC 3 cut(s) 165, 344, 381
BspTI CTTAAG 1 cut(s) 848
BsrDI GCAATG 2 cut(s) 260, 873
BsrGI TGTACA 1 cut(s) 521
BsrI ACTGG 2 cut(s) 402, 623
BssECI CCNNGG 5 cut(s) 283, 380, 483, 634, 930
BssMI GATC 6 cut(s) 106, 219, 450, 454, 885, 982
BssT1I CCWWGG 2 cut(s) 380, 483
Bst2UI CCWGG 5 cut(s) 284, 357, 459, 635, 932
Bst4CI ACNGT 1 cut(s) 775
Bst6I CTCTTC 3 cut(s) 165, 344, 381
BstAFI CTTAAG 1 cut(s) 848
BstAUI TGTACA 1 cut(s) 521
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 6 cut(s) 20, 165, 183, 444, 493, 666
BstF5I GGATG 3 cut(s) 306, 799, 810
BstFNI CGCG 1 cut(s) 42
BstKTI GATC 6 cut(s) 109, 222, 453, 457, 888, 985
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 6 cut(s) 106, 219, 450, 454, 885, 982
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 5 cut(s) 284, 357, 459, 635, 932
BstNSI RCATGY 4 cut(s) 50, 192, 477, 911
BstSCI CCNGG 6 cut(s) 282, 355, 457, 633, 813, 930
BstSFI CTRYAG 2 cut(s) 373, 678
BstSLI GKGCMC 1 cut(s) 700
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 5 cut(s) 312, 706, 850, 888, 891
BstX2I RGATCY 1 cut(s) 219
BstXI CCANNNNNNTGG 1 cut(s) 993
BstYI RGATCY 1 cut(s) 219
Bsu15I ATCGAT 1 cut(s) 453
BsuTUI ATCGAT 1 cut(s) 453
BtsCI GGATG 3 cut(s) 306, 799, 810
BtsI GCAGTG 1 cut(s) 952
BtsIMutI CAGTG 3 cut(s) 395, 630, 952
Cac8I GCNNGC 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 747
ClaI ATCGAT 1 cut(s) 453
Csp6I GTAC 4 cut(s) 140, 522, 754, 779
CspCI CAANNNNNGTGG 2 cut(s) 725, 760
CviAII CATG 6 cut(s) 47, 189, 311, 474, 692, 908
CviQI GTAC 4 cut(s) 140, 522, 754, 779
DdeI CTNAG 6 cut(s) 20, 165, 183, 444, 493, 666
DpnI GATC 6 cut(s) 108, 221, 452, 456, 887, 984
DpnII GATC 6 cut(s) 106, 219, 450, 454, 885, 982
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
Eam1104I CTCTTC 3 cut(s) 165, 344, 381
EarI CTCTTC 3 cut(s) 165, 344, 381
EciI GGCGGA 1 cut(s) 619
Ecl136II GAGCTC 3 cut(s) 337, 570, 820
Eco130I CCWWGG 2 cut(s) 380, 483
Eco24I GRGCYC 3 cut(s) 339, 572, 822
Eco47I GGWCC 1 cut(s) 747
Eco53kI GAGCTC 3 cut(s) 337, 570, 820
Eco57I CTGAAG 2 cut(s) 215, 579
EcoICRI GAGCTC 3 cut(s) 337, 570, 820
EcoRII CCWGG 5 cut(s) 282, 355, 457, 633, 930
EcoT14I CCWWGG 2 cut(s) 380, 483
EcoT38I GRGCYC 3 cut(s) 339, 572, 822
ErhI CCWWGG 2 cut(s) 380, 483
FaeI CATG 6 cut(s) 50, 192, 314, 477, 695, 911
FalI AAGNNNNNCTT 2 cut(s) 352, 384
FatI CATG 6 cut(s) 46, 188, 310, 473, 691, 907
Fnu4HI GCNGC 6 cut(s) 40, 326, 720, 864, 902, 905
FokI GGATG 3 cut(s) 293, 797, 806
FriOI GRGCYC 3 cut(s) 339, 572, 822
Fsp4HI GCNGC 6 cut(s) 40, 326, 720, 864, 902, 905
FspBI CTAG 2 cut(s) 143, 782
GluI GCNGC 6 cut(s) 40, 326, 720, 864, 902, 905
GsuI CTGGAG 1 cut(s) 200
HapII CCGG 3 cut(s) 74, 516, 814
Hin1II CATG 6 cut(s) 50, 192, 314, 477, 695, 911
HindIII AAGCTT 1 cut(s) 845
HinfI GANTC 4 cut(s) 436, 803, 875, 944
HpaII CCGG 3 cut(s) 74, 516, 814
HphI GGTGA 3 cut(s) 80, 259, 412
Hpy166II GTNNAC 4 cut(s) 71, 524, 654, 698
Hpy188I TCNGA 9 cut(s) 89, 166, 234, 320, 496, 545, 559, 949, 992
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 4 cut(s) 71, 524, 654, 698
HpyAV CCTTC 6 cut(s) 215, 342, 354, 378, 529, 610
HpyCH4III ACNGT 1 cut(s) 775
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 8 cut(s) 46, 100, 265, 680, 698, 866, 907, 938
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 6 cut(s) 20, 165, 183, 444, 493, 666
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 6 cut(s) 50, 192, 314, 477, 695, 911
Kzo9I GATC 6 cut(s) 106, 219, 450, 454, 885, 982
LguI GCTCTTC 3 cut(s) 165, 344, 381
LmnI GCTCC 2 cut(s) 334, 817
Lsp1109I GCAGC 5 cut(s) 312, 706, 850, 888, 891
MaeI CTAG 2 cut(s) 143, 782
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 247, 910
MalI GATC 6 cut(s) 108, 221, 452, 456, 887, 984
MboI GATC 6 cut(s) 106, 219, 450, 454, 885, 982
MboII GAAGA 6 cut(s) 116, 145, 182, 331, 398, 884
MflI RGATCY 1 cut(s) 219
MhlI GDGCHC 6 cut(s) 161, 339, 572, 700, 822, 954
MluCI AATT 5 cut(s) 81, 117, 765, 891, 924
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 2 cut(s) 568, 771
MnlI CCTC 8 cut(s) 160, 178, 490, 594, 600, 661, 817, 910
MroXI GAANNNNTTC 1 cut(s) 539
MseI TTAA 5 cut(s) 114, 465, 849, 894, 923
MslI CAYNNNNRTG 1 cut(s) 991
MspA1I CMGCKG 1 cut(s) 659
MspCI CTTAAG 1 cut(s) 848
MspI CCGG 3 cut(s) 74, 516, 814
MspR9I CCNGG 6 cut(s) 284, 357, 459, 635, 815, 932
MvaI CCWGG 5 cut(s) 284, 357, 459, 635, 932
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 334
NciI CCSGG 1 cut(s) 815
NdeII GATC 6 cut(s) 106, 219, 450, 454, 885, 982
NlaIII CATG 6 cut(s) 50, 192, 314, 477, 695, 911
NlaIV GGNNCC 1 cut(s) 621
NmuCI GTSAC 1 cut(s) 247
NspI RCATGY 4 cut(s) 50, 192, 477, 911
PciI ACATGT 1 cut(s) 473
PciSI GCTCTTC 3 cut(s) 165, 344, 381
PdmI GAANNNNTTC 1 cut(s) 539
PfeI GAWTC 3 cut(s) 436, 875, 944
PfoI TCCNGGA 1 cut(s) 813
PkrI GCNGC 6 cut(s) 41, 327, 721, 865, 903, 906
PleI GAGTC 1 cut(s) 797
PpsI GAGTC 1 cut(s) 797
PscI ACATGT 1 cut(s) 473
Psp124BI GAGCTC 3 cut(s) 339, 572, 822
Psp6I CCWGG 5 cut(s) 282, 355, 457, 633, 930
PspGI CCWGG 5 cut(s) 282, 355, 457, 633, 930
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 1 cut(s) 747
PstI CTGCAG 1 cut(s) 682
PsuI RGATCY 1 cut(s) 219
RsaI GTAC 4 cut(s) 141, 523, 755, 780
RsaNI GTAC 4 cut(s) 140, 522, 754, 779
RseI CAYNNNNRTG 1 cut(s) 991
SacI GAGCTC 3 cut(s) 339, 572, 822
SapI GCTCTTC 3 cut(s) 165, 344, 381
SaqAI TTAA 5 cut(s) 114, 465, 849, 894, 923
SatI GCNGC 6 cut(s) 40, 326, 720, 864, 902, 905
Sau3AI GATC 6 cut(s) 106, 219, 450, 454, 885, 982
Sau96I GGNCC 1 cut(s) 747
ScaI AGTACT 2 cut(s) 141, 755
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 6 cut(s) 284, 357, 459, 635, 815, 932
SduI GDGCHC 6 cut(s) 161, 339, 572, 700, 822, 954
SfcI CTRYAG 2 cut(s) 373, 678
SinI GGWCC 1 cut(s) 747
SmiMI CAYNNNNRTG 1 cut(s) 991
SmlI CTYRAG 2 cut(s) 268, 848
SmoI CTYRAG 2 cut(s) 268, 848
Sse9I AATT 5 cut(s) 81, 117, 765, 891, 924
SsiI CCGC 3 cut(s) 40, 604, 657
SspMI CTAG 2 cut(s) 143, 782
SstI GAGCTC 3 cut(s) 339, 572, 822
StyD4I CCNGG 6 cut(s) 282, 355, 457, 633, 813, 930
StyI CCWWGG 2 cut(s) 380, 483
TaaI ACNGT 1 cut(s) 775
TaiI ACGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 453
TasI AATT 5 cut(s) 81, 117, 765, 891, 924
TatI WGTACW 4 cut(s) 139, 521, 753, 778
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 3 cut(s) 436, 875, 944
Tru1I TTAA 5 cut(s) 114, 465, 849, 894, 923
Tru9I TTAA 5 cut(s) 114, 465, 849, 894, 923
TscAI CASTG 3 cut(s) 402, 630, 959
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 5 cut(s) 325, 719, 863, 901, 904
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 4 cut(s) 402, 548, 819, 957
TspRI CASTG 3 cut(s) 402, 630, 959
Vha464I CTTAAG 1 cut(s) 848
VneI GTGCAC 1 cut(s) 696
VpaK11BI GGWCC 1 cut(s) 747
XapI RAATTY 1 cut(s) 765
XceI RCATGY 4 cut(s) 50, 192, 477, 911
XmnI GAANNNNTTC 1 cut(s) 539
XspI CTAG 2 cut(s) 143, 782
ZrmI AGTACT 2 cut(s) 141, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.