Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Forward (+)

233724 .. 235181

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCTTATCATGTATCCTCCACACCCTCCTCTCTCTTTCTCTCTTACTCTCTCTCCTCCTCTAGAAAGCTCAGGCCAACCACCTCTGATACTCACACCTTCAATCTCACCTTCCCTACTCTTCACTCCACAATTTCTCTCCAAATAAACCATGTTTCTTTACAAGAAACCCTAAAAACTGAAAACCCCGATGGAAATTCCGAGTCTTCCTCCAAAAGCTATGTTTGGGTCAATCCCAGCAGCCCCAGGGCTTCTCATCTTAGGAACAAGTCCTACGATTCCAGGTACACTTCTTTAGTCAAAGTAGCTGAGTCCTTGAACTCTGTCTGCCTAAGTGAAAGTGATGTTTTTGATATTTTAAAGACTTTAGGTGATGGGGTTTTGGAACAAGATGCTGTCGTTGTTCTTAATACCATGCAGAGGTTTAAACCTAAGAGGGAAGTGGTTCTCTACAATGTGACATTGAAAGTGTTTAGAAAGTGTATGGATTTAGTGAGAGCAGAGAAGCTGTTTAATGAGATGCTTGAGAGAGGTGGTACACCTGATAATGTTACGTTTTCGACTATGATTAGCTGTGCTAGGATGTGTTATCTGCCTGATAAGGCTGTGGAGTGGTTTGAGAAGATGACTAGTTACGGGTGTAGTCCTGATGTTACCTATTCGGCTATGATCGATGCATATGGCCGTGCCGGTAATGTTGACAAGGCTTTCAGCTTGTATGACCGCGCTAGGACAGAGAAATGGCGCATTGATCCAGTGACAATTGCAACGTTGGTTAAGATTCACGGGCAATCGGGGAATTATGATGGGTGCTTGAATGTTTACGAGGAAATGAAGGCAATTGGGGTTAAGCCGAACATGGTTATTTATAATACTTTGTTGGATGCCAAGGGAAGAGCTAAGAGGCCTTGGCAGGCCAAGAAAATTTACCGAGAGATGATCAGCAAGGGGTCTTCTGCACAGACCGGCCATTTGACTTTGATTAGCAGTCATCGATATTCAAGAACTACCATGGGAAACTGTATCTGTGCTCCGTTCCATCCGCCCCAAGAGAAGATCAAGGTAGTAGTCTTTAATGGAGGAGTAGAAGAGTTCAGTGCCTCGACAACAGTCGAAGAAATCACATCCGGCCCTTCCGTGGATTACAAGCTGGTGCACAAGGCCAACCCATATACACCATTGACGGGTCATTTTTTTCTTACCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

403

Amino Acids

45.04

Weight (kDa)

8.91

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	147 - 192	1.5e-09	PPR repeat family
PPR_1	PF12854	213 - 242	3.4e-07	PPR repeat
TPR_24	PF23276	217 - 313	3.2e-06	Fungal tetratrico peptide repeats
PPR	PF01535	218 - 242	2.7e-07	PPR repeat
PPR_2	PF13041	218 - 260	8.3e-06	PPR repeat family
PPR_3	PF13812	249 - 298	9.1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	253 - 296	9.8e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	870
AccII	CGCG	1 cut(s)	726
AciI	CCGC	2 cut(s)	724, 1043
AclI	AACGTT	1 cut(s)	770
AclWI	GGATC	1 cut(s)	746
AcoI	YGGCCR	2 cut(s)	682, 967
AcsI	RAATTY	2 cut(s)	196, 924
AfaI	GTAC	2 cut(s)	287, 538
AfiI	CCNNNNNNNGG	3 cut(s)	420, 1138, 1184
AgsI	TTSAA	5 cut(s)	103, 319, 466, 817, 1002
AhlI	ACTAGT	1 cut(s)	629
AjnI	CCWGG	2 cut(s)	245, 281
AluBI	AGCT	8 cut(s)	70, 219, 308, 508, 573, 714, 899, 1150
AluI	AGCT	8 cut(s)	70, 219, 308, 508, 573, 714, 899, 1150
Alw21I	GWGCWC	2 cut(s)	1033, 1158
Alw44I	GTGCAC	1 cut(s)	1154
AlwI	GGATC	1 cut(s)	746
AoxI	GGCC	7 cut(s)	74, 682, 905, 915, 967, 1129, 1161
ApaLI	GTGCAC	1 cut(s)	1154
ApeKI	GCWGC	1 cut(s)	240
ApoI	RAATTY	2 cut(s)	196, 924
ArsI	GACNNNNNNTTYG	2 cut(s)	955, 987
Asp700I	GAANNNNTTC	1 cut(s)	444
AspLEI	GCGC	2 cut(s)	728, 747
AspS9I	GGNCC	1 cut(s)	1130
AsuHPI	GGTGA	2 cut(s)	100, 383
BaeGI	GKGCMC	1 cut(s)	1158
BbsI	GAAGAC	2 cut(s)	198, 945
Bbv12I	GWGCWC	2 cut(s)	1033, 1158
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	4 cut(s)	185, 368, 800, 1047
BceAI	ACGGC	1 cut(s)	669
BciT130I	CCWGG	2 cut(s)	247, 283
BciVI	GTATCC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	939
BcuI	ACTAGT	1 cut(s)	629
BfaI	CTAG	4 cut(s)	63, 579, 630, 729
BfuI	GTATCC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	242
Bme1390I	CCNGG	2 cut(s)	247, 283
BmgT120I	GGNCC	1 cut(s)	1130
BmrFI	CCNGG	2 cut(s)	247, 283
BmsI	GCATC	4 cut(s)	382, 510, 664, 874
BoxI	GACNNNNGTC	1 cut(s)	1109
BpiI	GAAGAC	2 cut(s)	198, 945
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
Bpu10I	CCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	545
Bsa29I	ATCGAT	2 cut(s)	672, 994
BsaJI	CCNNGG	6 cut(s)	245, 246, 888, 908, 1011, 1137
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	3 cut(s)	420, 1138, 1184
Bse118I	RCCGGY	2 cut(s)	689, 965
Bse1I	ACTGG	1 cut(s)	755
BseBI	CCWGG	2 cut(s)	247, 283
BseCI	ATCGAT	2 cut(s)	672, 994
BseDI	CCNNGG	6 cut(s)	245, 246, 888, 908, 1011, 1137
BseGI	GGATG	4 cut(s)	588, 889, 1039, 1124
BseLI	CCNNNNNNNGG	3 cut(s)	420, 1138, 1184
BseMII	CTCAG	2 cut(s)	85, 300
BseNI	ACTGG	1 cut(s)	755
BseRI	GAGGAG	4 cut(s)	19, 46, 49, 1095
BseSI	GKGCMC	1 cut(s)	1158
BseXI	GCAGC	1 cut(s)	252
BseYI	CCCAGC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	942
Bsh1236I	CGCG	1 cut(s)	726
BshFI	GGCC	7 cut(s)	76, 684, 907, 917, 969, 1131, 1163
BshVI	ATCGAT	2 cut(s)	672, 994
BsiHKAI	GWGCWC	2 cut(s)	1033, 1158
BsiSI	CCGG	3 cut(s)	690, 966, 1128
BslI	CCNNNNNNNGG	3 cut(s)	420, 1138, 1184
BsnI	GGCC	7 cut(s)	76, 684, 907, 917, 969, 1131, 1163
Bsp1286I	GDGCHC	2 cut(s)	1033, 1158
Bsp143I	GATC	4 cut(s)	669, 751, 939, 1056
Bsp19I	CCATGG	1 cut(s)	1011
BspACI	CCGC	2 cut(s)	724, 1043
BspANI	GGCC	7 cut(s)	76, 684, 907, 917, 969, 1131, 1163
BspCNI	CTCAG	2 cut(s)	84, 301
BspDI	ATCGAT	2 cut(s)	672, 994
BspFNI	CGCG	1 cut(s)	726
BspPI	GGATC	1 cut(s)	746
BspQI	GCTCTTC	1 cut(s)	889
BsrFI	RCCGGY	2 cut(s)	689, 965
BsrI	ACTGG	1 cut(s)	755
BssAI	RCCGGY	2 cut(s)	689, 965
BssECI	CCNNGG	6 cut(s)	245, 246, 888, 908, 1011, 1137
BssMI	GATC	4 cut(s)	669, 751, 939, 1056
BssT1I	CCWWGG	3 cut(s)	888, 908, 1011
Bst2UI	CCWGG	2 cut(s)	247, 283
Bst4CI	ACNGT	2 cut(s)	1022, 1111
Bst6I	CTCTTC	3 cut(s)	126, 889, 1083
BstC8I	GCNNGC	1 cut(s)	915
BstDEI	CTNAG	6 cut(s)	71, 260, 309, 332, 432, 900
BstDSI	CCRYGG	2 cut(s)	1011, 1137
BstF5I	GGATG	4 cut(s)	588, 889, 1039, 1124
BstFNI	CGCG	1 cut(s)	726
BstHHI	GCGC	2 cut(s)	728, 747
BstKTI	GATC	4 cut(s)	672, 754, 942, 1059
BstMBI	GATC	4 cut(s)	669, 751, 939, 1056
BstNI	CCWGG	2 cut(s)	247, 283
BstPAI	GACNNNNGTC	1 cut(s)	1109
BstSCI	CCNGG	2 cut(s)	245, 281
BstSLI	GKGCMC	1 cut(s)	1158
BstUI	CGCG	1 cut(s)	726
BstV1I	GCAGC	1 cut(s)	252
BstV2I	GAAGAC	2 cut(s)	198, 945
Bsu15I	ATCGAT	2 cut(s)	672, 994
BsuI	GTATCC	1 cut(s)	25
BsuRI	GGCC	7 cut(s)	76, 684, 907, 917, 969, 1131, 1163
BsuTUI	ATCGAT	2 cut(s)	672, 994
BtgI	CCRYGG	2 cut(s)	1011, 1137
BtsCI	GGATG	4 cut(s)	588, 889, 1039, 1124
BtsIMutI	CAGTG	2 cut(s)	762, 1102
Cac8I	GCNNGC	1 cut(s)	915
CfoI	GCGC	2 cut(s)	728, 747
Cfr10I	RCCGGY	2 cut(s)	689, 965
Cfr13I	GGNCC	1 cut(s)	1130
ClaI	ATCGAT	2 cut(s)	672, 994
Csp6I	GTAC	2 cut(s)	286, 537
CviAII	CATG	5 cut(s)	11, 152, 415, 859, 1012
CviQI	GTAC	2 cut(s)	286, 537
DdeI	CTNAG	6 cut(s)	71, 260, 309, 332, 432, 900
DpnI	GATC	4 cut(s)	671, 753, 941, 1058
DpnII	GATC	4 cut(s)	669, 751, 939, 1056
DraI	TTTAAA	2 cut(s)	360, 427
EaeI	YGGCCR	2 cut(s)	682, 967
Eam1104I	CTCTTC	3 cut(s)	126, 889, 1083
EarI	CTCTTC	3 cut(s)	126, 889, 1083
EciI	GGCGGA	1 cut(s)	1032
Eco130I	CCWWGG	3 cut(s)	888, 908, 1011
Eco147I	AGGCCT	1 cut(s)	907
EcoRII	CCWGG	2 cut(s)	245, 281
EcoT14I	CCWWGG	3 cut(s)	888, 908, 1011
EcoT22I	ATGCAT	1 cut(s)	679
ErhI	CCWWGG	3 cut(s)	888, 908, 1011
FaeI	CATG	5 cut(s)	14, 155, 418, 862, 1015
FatI	CATG	5 cut(s)	10, 151, 414, 858, 1011
FauNDI	CATATG	1 cut(s)	679
FbaI	TGATCA	1 cut(s)	939
Fnu4HI	GCNGC	1 cut(s)	241
FokI	GGATG	4 cut(s)	595, 896, 1026, 1111
Fsp4HI	GCNGC	1 cut(s)	241
FspBI	CTAG	4 cut(s)	63, 579, 630, 729
GlaI	GCGC	2 cut(s)	727, 746
GluI	GCNGC	1 cut(s)	241
GsaI	CCCAGC	1 cut(s)	240
HaeIII	GGCC	7 cut(s)	76, 684, 907, 917, 969, 1131, 1163
HapII	CCGG	3 cut(s)	690, 966, 1128
HhaI	GCGC	2 cut(s)	728, 747
Hin1II	CATG	5 cut(s)	14, 155, 418, 862, 1015
Hin6I	GCGC	2 cut(s)	726, 745
HinP1I	GCGC	2 cut(s)	726, 745
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	4 cut(s)	203, 278, 311, 781
HpaII	CCGG	3 cut(s)	690, 966, 1128
HphI	GGTGA	2 cut(s)	100, 383
Hpy166II	GTNNAC	5 cut(s)	288, 539, 700, 823, 1156
Hpy188I	TCNGA	2 cut(s)	88, 202
Hpy188III	TCNNGA	3 cut(s)	63, 647, 1002
Hpy8I	GTNNAC	5 cut(s)	288, 539, 700, 823, 1156
HpyAV	CCTTC	4 cut(s)	109, 121, 829, 1143
HpyCH4III	ACNGT	2 cut(s)	1022, 1111
HpyCH4IV	ACGT	2 cut(s)	554, 770
HpyCH4V	TGCA	5 cut(s)	418, 677, 767, 959, 1156
HpyF3I	CTNAG	6 cut(s)	71, 260, 309, 332, 432, 900
HpySE526I	ACGT	2 cut(s)	554, 770
Hsp92II	CATG	5 cut(s)	14, 155, 418, 862, 1015
HspAI	GCGC	2 cut(s)	726, 745
Ksp22I	TGATCA	1 cut(s)	939
Kzo9I	GATC	4 cut(s)	669, 751, 939, 1056
LguI	GCTCTTC	1 cut(s)	889
LmnI	GCTCC	1 cut(s)	1036
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	4 cut(s)	382, 510, 664, 874
MaeI	CTAG	4 cut(s)	63, 579, 630, 729
MaeII	ACGT	2 cut(s)	554, 770
MaeIII	GTNAC	5 cut(s)	457, 550, 632, 652, 757
MalI	GATC	4 cut(s)	671, 753, 941, 1058
MboI	GATC	4 cut(s)	669, 751, 939, 1056
MboII	GAAGA	8 cut(s)	113, 198, 634, 906, 945, 1066, 1100, 1127
MfeI	CAATTG	2 cut(s)	762, 840
MhlI	GDGCHC	2 cut(s)	1033, 1158
MluCI	AATT	6 cut(s)	132, 196, 762, 799, 840, 924
MlyI	GAGTC	2 cut(s)	212, 320
MmeI	TCCRAC	1 cut(s)	861
Mph1103I	ATGCAT	1 cut(s)	679
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	7 cut(s)	359, 408, 426, 513, 777, 849, 1074
MspI	CCGG	3 cut(s)	690, 966, 1128
MspR9I	CCNGG	2 cut(s)	247, 283
MssI	GTTTAAAC	1 cut(s)	427
MunI	CAATTG	2 cut(s)	762, 840
MvaI	CCWGG	2 cut(s)	247, 283
MvnI	CGCG	1 cut(s)	726
NcoI	CCATGG	1 cut(s)	1011
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	4 cut(s)	669, 751, 939, 1056
NlaIII	CATG	5 cut(s)	14, 155, 418, 862, 1015
NmuCI	GTSAC	2 cut(s)	457, 757
NsiI	ATGCAT	1 cut(s)	679
PasI	CCCWGGG	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	907
PciSI	GCTCTTC	1 cut(s)	889
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	278, 781
PkrI	GCNGC	1 cut(s)	242
PleI	GAGTC	2 cut(s)	211, 319
PmeI	GTTTAAAC	1 cut(s)	427
PpsI	GAGTC	2 cut(s)	211, 319
PshAI	GACNNNNGTC	1 cut(s)	1109
PsiI	TTATAA	1 cut(s)	870
Psp1406I	AACGTT	1 cut(s)	770
Psp6I	CCWGG	2 cut(s)	245, 281
PspFI	CCCAGC	1 cut(s)	236
PspGI	CCWGG	2 cut(s)	245, 281
PspPI	GGNCC	1 cut(s)	1130
PsrI	GAACNNNNNNTAC	2 cut(s)	257, 289
RsaI	GTAC	2 cut(s)	287, 538
RsaNI	GTAC	2 cut(s)	286, 537
SapI	GCTCTTC	1 cut(s)	889
SaqAI	TTAA	7 cut(s)	359, 408, 426, 513, 777, 849, 1074
SatI	GCNGC	1 cut(s)	241
Sau3AI	GATC	4 cut(s)	669, 751, 939, 1056
Sau96I	GGNCC	1 cut(s)	1130
SchI	GAGTC	2 cut(s)	212, 320
ScrFI	CCNGG	2 cut(s)	247, 283
SduI	GDGCHC	2 cut(s)	1033, 1158
SfaNI	GCATC	4 cut(s)	382, 510, 664, 874
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SpeI	ACTAGT	1 cut(s)	629
Sse9I	AATT	6 cut(s)	132, 196, 762, 799, 840, 924
SseBI	AGGCCT	1 cut(s)	907
SsiI	CCGC	2 cut(s)	724, 1043
SspMI	CTAG	4 cut(s)	63, 579, 630, 729
StuI	AGGCCT	1 cut(s)	907
StyD4I	CCNGG	2 cut(s)	245, 281
StyI	CCWWGG	3 cut(s)	888, 908, 1011
TaaI	ACNGT	2 cut(s)	1022, 1111
TaiI	ACGT	2 cut(s)	557, 773
TaqI	TCGA	5 cut(s)	560, 672, 994, 1103, 1113
TasI	AATT	6 cut(s)	132, 196, 762, 799, 840, 924
TfiI	GAWTC	2 cut(s)	278, 781
Tru1I	TTAA	7 cut(s)	359, 408, 426, 513, 777, 849, 1074
Tru9I	TTAA	7 cut(s)	359, 408, 426, 513, 777, 849, 1074
TscAI	CASTG	2 cut(s)	762, 1102
TseFI	GTSAC	2 cut(s)	457, 757
TseI	GCWGC	1 cut(s)	240
Tsp45I	GTSAC	2 cut(s)	457, 757
TspDTI	ATGAA	1 cut(s)	848
TspGWI	ACGGA	2 cut(s)	1023, 1126
TspRI	CASTG	2 cut(s)	762, 1102
VneI	GTGCAC	1 cut(s)	1154
XapI	RAATTY	2 cut(s)	196, 924
XbaI	TCTAGA	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	4 cut(s)	63, 579, 630, 729
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.