Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8161794.1

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 663

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8161794.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

gctcaggaagaaatcctatgattccaggtatgcttctctagtcaaagcggctgagtccttgaactctactggtctaagtgaaggtgatgttatcggtattttaaagggtttaggtgacagggttttggaacaagatgctgtggttgttctcaataatatggttaatcccgaaaatgcgttgcttgttctcaagtactttcagcggaggtttaaaccaaagagggaagtggttctctataatgtgaccttgaaagtttttaggaagtgtaaggatttggagagagcagagaagctgttttatgagatacttgagagaggtgttaaacccgataatgttacattttcgactatgattagctgtgctaggatgtgttttctgcctgataaggctgtggagtggtttgagaagatgcctacttttgggtgtaatcccgatgatgttacctattcagctatgattgacgcatatgggcgtgccggtaatgttgacaaggcttttagcttgtatgaccgcgctaggacagagaagtggcgcattgatccggtgacatttgcaacgttgattaagattcacgggcaatcggggaattatgatgggtgcttgaatgtttacgaggaaatgaaggctattggggtgaagccgaacatggttatttataatac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

221

Amino Acids

25.17

Weight (kDa)

8.85

Isoelectric Point (pI)

28.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	658
AccII	CGCG	1 cut(s)	514
AciI	CCGC	3 cut(s)	48, 203, 512
AclI	AACGTT	1 cut(s)	558
AclWI	GGATC	1 cut(s)	534
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	420
AgsI	TTSAA	3 cut(s)	62, 251, 605
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	4 cut(s)	293, 358, 453, 502
AluI	AGCT	4 cut(s)	293, 358, 453, 502
AlwI	GGATC	1 cut(s)	534
Asp700I	GAANNNNTTC	1 cut(s)	229
AspLEI	GCGC	2 cut(s)	516, 535
AsuHPI	GGTGA	4 cut(s)	96, 126, 557, 647
BccI	CCATC	1 cut(s)	588
BciT130I	CCWGG	1 cut(s)	26
BfaI	CTAG	3 cut(s)	39, 364, 517
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
BmcAI	AGTACT	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	2 cut(s)	125, 400
Bpu10I	CCTNAGC	1 cut(s)	3
BpuEI	CTTGAG	2 cut(s)	174, 330
BsaWI	WCCGGW	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse118I	RCCGGY	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	17, 43
BseNI	ACTGG	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	514
BsiSI	CCGG	2 cut(s)	478, 543
BslI	CCNNNNNNNGG	1 cut(s)	420
Bsp143I	GATC	1 cut(s)	539
BspACI	CCGC	3 cut(s)	48, 203, 512
BspCNI	CTCAG	2 cut(s)	16, 44
BspFNI	CGCG	1 cut(s)	514
BspPI	GGATC	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	477
BssMI	GATC	1 cut(s)	539
Bst2UI	CCWGG	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	3 cut(s)	3, 52, 75
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	1 cut(s)	514
BstHHI	GCGC	2 cut(s)	516, 535
BstKTI	GATC	1 cut(s)	542
BstMBI	GATC	1 cut(s)	539
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	475
CfoI	GCGC	2 cut(s)	516, 535
Cfr10I	RCCGGY	1 cut(s)	477
CseI	GACGC	1 cut(s)	471
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	1 cut(s)	647
CviJI	RGCY	9 cut(s)	51, 293, 358, 390, 453, 495, 502, 627, 641
CviKI_1	RGCY	9 cut(s)	51, 293, 358, 390, 453, 495, 502, 627, 641
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	3, 52, 75
DpnI	GATC	1 cut(s)	541
DpnII	GATC	1 cut(s)	539
DraI	TTTAAA	2 cut(s)	103, 212
EcoRII	CCWGG	1 cut(s)	24
FaeI	CATG	1 cut(s)	650
FatI	CATG	1 cut(s)	646
FauNDI	CATATG	1 cut(s)	467
Fnu4HI	GCNGC	1 cut(s)	49
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	1 cut(s)	49
FspBI	CTAG	3 cut(s)	39, 364, 517
GlaI	GCGC	2 cut(s)	515, 534
GluI	GCNGC	1 cut(s)	49
HapII	CCGG	2 cut(s)	478, 543
HgaI	GACGC	1 cut(s)	471
HhaI	GCGC	2 cut(s)	516, 535
Hin1II	CATG	1 cut(s)	650
Hin6I	GCGC	2 cut(s)	514, 533
HinP1I	GCGC	2 cut(s)	514, 533
HincII	GTYRAC	1 cut(s)	488
HindII	GTYRAC	1 cut(s)	488
HinfI	GANTC	3 cut(s)	21, 54, 569
HpaII	CCGG	2 cut(s)	478, 543
HphI	GGTGA	4 cut(s)	96, 126, 557, 647
Hpy166II	GTNNAC	2 cut(s)	488, 611
Hpy188III	TCNNGA	3 cut(s)	5, 168, 432
Hpy8I	GTNNAC	2 cut(s)	488, 611
HpyAV	CCTTC	2 cut(s)	75, 617
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	1 cut(s)	555
HpyF3I	CTNAG	3 cut(s)	3, 52, 75
HpySE526I	ACGT	1 cut(s)	558
Hsp92II	CATG	1 cut(s)	650
HspAI	GCGC	2 cut(s)	514, 533
Kzo9I	GATC	1 cut(s)	539
LpnPI	CCDG	7 cut(s)	11, 38, 55, 104, 394, 491, 556
LweI	GCATC	2 cut(s)	125, 400
MaeI	CTAG	3 cut(s)	39, 364, 517
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	5 cut(s)	114, 242, 335, 440, 545
MalI	GATC	1 cut(s)	541
MboI	GATC	1 cut(s)	539
MboII	GAAGA	2 cut(s)	20, 419
MluCI	AATT	1 cut(s)	587
MlyI	GAGTC	1 cut(s)	63
MnlI	CCTC	4 cut(s)	199, 214, 309, 608
MroXI	GAANNNNTTC	1 cut(s)	229
MseI	TTAA	5 cut(s)	102, 163, 211, 322, 565
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	2 cut(s)	478, 543
MspR9I	CCNGG	1 cut(s)	26
MssI	GTTTAAAC	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	514
NdeI	CATATG	1 cut(s)	467
NdeII	GATC	1 cut(s)	539
NlaIII	CATG	1 cut(s)	650
NmuCI	GTSAC	3 cut(s)	114, 242, 545
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	21, 569
PkrI	GCNGC	1 cut(s)	50
PleI	GAGTC	1 cut(s)	62
PmeI	GTTTAAAC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	62
PsiI	TTATAA	1 cut(s)	658
Psp1406I	AACGTT	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SaqAI	TTAA	5 cut(s)	102, 163, 211, 322, 565
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	1 cut(s)	539
ScaI	AGTACT	1 cut(s)	195
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	26
SfaNI	GCATC	2 cut(s)	125, 400
SmlI	CTYRAG	2 cut(s)	189, 309
SmoI	CTYRAG	2 cut(s)	189, 309
Sse9I	AATT	1 cut(s)	587
SsiI	CCGC	3 cut(s)	48, 203, 512
SspMI	CTAG	3 cut(s)	39, 364, 517
StyD4I	CCNGG	1 cut(s)	24
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	1 cut(s)	345
TasI	AATT	1 cut(s)	587
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	21, 569
Tru1I	TTAA	5 cut(s)	102, 163, 211, 322, 565
Tru9I	TTAA	5 cut(s)	102, 163, 211, 322, 565
TseFI	GTSAC	3 cut(s)	114, 242, 545
Tsp45I	GTSAC	3 cut(s)	114, 242, 545
TspDTI	ATGAA	1 cut(s)	636
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	3 cut(s)	39, 364, 517
ZrmI	AGTACT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.