Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Reverse (-)

96259064 .. 96261487

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2097 bp

ATGGCTTATCATTTATCCTCCACACCCTCTTCGCTCTTCCATAACCGCCACACCCTCTCTCACTCTGTATCTTCCTCCTCTAGAAAGCTCAGGCCAACTAACTCTGATATTCACACCTTCAATCTCACCTTCCCTACACTTCACTCCAGAATTTCTCTCCAAATAAACCATGTTTCTTTACAAGAAACCCAGAGCCCAAAACTTGAAAACCCTCAAAGCCCAGATGGCAGTTCCGAGTCTTCGTCCAAAAGCTATATCTGGGTCAATCCCAGCAGCCCCAGAGCTTCACAGCTCAGGAAGAAATCGTATGATTCCAGGTATGCTTCTTTAGTCAAAGCAGCTGAGTCCTTGAACTCTACTGGTCTAAGTGAAAGTGATGTTATTGGTATTTTAAAGGGTTTAGGTGACAGGGTTTTGGAACAAGATGCTGTGGTTGTTCTCAATAATATGGTTAATCCCGAAAATGCGTTGCTTGTTCTCAACTACTTTCGGCAGAGGTTTAAACCAAAGAGGGAAGTGGTTCTCTATAATGTGACCTTGAAAGTTTTTAGGAAGTGTAAGGATTTGGAGAGAGCAGAGAAGCTGTTTTATGAGATACTTGAGAGAGGTGTTAAACCTGATAATGTTACATTTTCGACTATGATTAGCTGTGCTAGGATGTGTTATCTGCCTGATAAGGCTGTGGAGTGGTTTGAGAAGATGCCTACTTTTGGGTGTAATCCCGATGATGTTACCTATTCAGCTATGATTGACGCATATGGGCGTGCCGGTAATGTTGACAAGGCTTTTAGCTTGTATGACCGCGCTAGGACAGAGAGGTGGCGCATTGATCCAGTGACATTTGCAACATTGATTAAGATTCACGGGCAATCAGGGAATTATGATGGGTGCTTGAATGTTTACGAGGAAATGAAGGCTATTGGGGTGAAGCCGAACATGGTTATTTATAATACTTTGTTGGATGCTATGGGAAGAGCTAAGAGGCCTTGGCAGGCCAAGAAAATTTACCGAGACCTGATCAGCAAGGGGTCTTCGCCAAATTGGGTGACCTATGCATCTCTGCTACGGGCCTTTGGTAGAGCTCGCTATGGTGATGATGCTCTGAATGTGTACAAGGAGATGAAGGAGAAGGGAATGGAGTTGAATGTCATTCTCTACAACACCCTTTTGTCTATGTGTGCTGATATTGGCTACACTGATCAAGCTATTGAGATTTTCAAAGACATGAAGAATTCCGAAACTTGGAAGCCTGATAGCTGGACATTTTCATCCATGATTACCATATATTCCTGTAGCGGGAAAGTCTCAGAGGCAGAGAGGACGTTGAATGAGATGGTGGAAGCTGGTTTCCAGCCTAATATCTTTATTTTGACATCTCTAATACAATGCTATGGGAAGGCCAAGCGTACTGATGATGTTGTCAGGTCATTCAATCAACTACTAGAATTGGGCATAACTCCTGATGAGCGTTTCTGTGGTTGTCTCCTGAATGTGATGACCCAAACACCAAAGGATGAACTATCTAAGCTGACTGATTGCATTGAGCGGGGTAATGAGAAGCTTGGATATGTTGTAAGACTTCTGGTAGAGAAGCAAGACAGTAGTGAAAACTTCAGGAAGGAAGCATCAGAACTTTTTAATTCTGTTGGTTCCGATGTAAAGAAGGCCTACTGCAATTGCTTGATTGATCTTTGTGTGAACCTCGATCTCTTGGAGAGAGCCTGTGAGCTTCTAGACCTGGGGCTTACACTTGAGATATACACAGATATACAGTCAAGGTCTCCAACCCAGTGGTCTCTGTATCTCAAGGGTCTCTCTCTTGGGGCAGCTCTTACTGCATTACATGTTTGGATTAATGACTTGTCTCGTTCGCTGGAATCTGGGGAGGAGCTTCCACCTCTGCTTGGAATTAATACCGGACATGGCAAACATAAATATTCAGACAAAGGTCTAGCGAGTGTGTTTGAGTCACATTTGAAGGAAGTAGATGCTCCGTTCCATGAGGCCCCAGACAAGGTTGGCTGGTTTTTGACTACCAAGGTTGCAGTGACATCATGGTTGGAGTCTAGAAGGTCACCACAAGTAGTTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

698

Amino Acids

78.74

Weight (kDa)

7.49

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	172 - 217	1e-09	PPR repeat family
PPR_2	PF13041	224 - 253	2.9e-06	PPR repeat family
TPR_24	PF23276	227 - 338	4.3e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	238 - 268	4.3e-10	PPR repeat
PPR_2	PF13041	244 - 286	1.2e-06	PPR repeat family
PPR	PF01535	244 - 269	5.3e-07	PPR repeat
PPR_3	PF13812	275 - 324	1.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	311 - 359	6.9e-10	PPR repeat family
PPR_3	PF13812	334 - 394	1.2e-10	Pentatricopeptide repeat domain
PPR	PF01535	349 - 379	7.6e-06	PPR repeat
PPR_long	PF17177	366 - 503	8.9e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	372 - 429	1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	382 - 427	2.7e-09	PPR repeat family
PPR	PF01535	421 - 450	8.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
AccBSI	CCGCTC	1 cut(s)	1546
AccII	CGCG	1 cut(s)	804
AciI	CCGC	4 cut(s)	46, 802, 1296, 1546
AclWI	GGATC	1 cut(s)	824
AcsI	RAATTY	3 cut(s)	150, 1002, 1231
AcuI	CTGAAG	1 cut(s)	1597
AfaI	GTAC	2 cut(s)	1112, 1408
AfiI	CCNNNNNNNGG	5 cut(s)	710, 1242, 1296, 1904, 2014
AflIII	ACRYGT	1 cut(s)	1843
AjnI	CCWGG	2 cut(s)	314, 1737
Alw21I	GWGCWC	1 cut(s)	1084
Alw26I	GTCTC	7 cut(s)	1005, 1309, 1487, 1785, 1800, 1817, 1869
AlwI	GGATC	1 cut(s)	824
AoxI	GGCC	7 cut(s)	92, 983, 993, 1068, 1398, 1665, 2004
ApeKI	GCWGC	4 cut(s)	273, 338, 1826, 2090
ApoI	RAATTY	3 cut(s)	150, 1002, 1231
AseI	ATTAAT	2 cut(s)	1854, 1911
Asp700I	GAANNNNTTC	1 cut(s)	519
AspLEI	GCGC	2 cut(s)	806, 825
AspS9I	GGNCC	2 cut(s)	1068, 2005
AsuHPI	GGTGA	6 cut(s)	118, 416, 937, 1057, 1103, 2067
BanII	GRGCYC	2 cut(s)	197, 1084
BbsI	GAAGAC	2 cut(s)	231, 1023
Bbv12I	GWGCWC	1 cut(s)	1084
BbvI	GCAGC	4 cut(s)	285, 350, 1838, 2077
BccI	CCATC	3 cut(s)	218, 878, 1327
BciT130I	CCWGG	2 cut(s)	316, 1739
BclI	TGATCA	2 cut(s)	1017, 1198
BcoDI	GTCTC	7 cut(s)	1005, 1309, 1487, 1785, 1800, 1817, 1869
BfaI	CTAG	7 cut(s)	81, 654, 807, 1442, 1733, 1952, 2067
BfmI	CTRYAG	1 cut(s)	1291
BglI	GCCNNNNNGGC	1 cut(s)	225
BisI	GCNGC	4 cut(s)	274, 339, 1827, 2091
BlsI	GCNGC	4 cut(s)	275, 340, 1828, 2092
Bme1390I	CCNGG	2 cut(s)	316, 1739
BmgT120I	GGNCC	2 cut(s)	1068, 2005
BmiI	GGNNCC	2 cut(s)	1651, 2007
BmrFI	CCNGG	2 cut(s)	316, 1739
BmrI	ACTGGG	1 cut(s)	1783
BmsI	GCATC	7 cut(s)	415, 690, 952, 1064, 1087, 1634, 1978
BmuI	ACTGGG	1 cut(s)	1783
BoxI	GACNNNNGTC	1 cut(s)	1947
BpiI	GAAGAC	2 cut(s)	231, 1023
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	2 cut(s)	89, 293
BpuEI	CTTGAG	3 cut(s)	620, 1772, 1790
BsaI	GGTCTC	4 cut(s)	1005, 1785, 1800, 1817
BsaJI	CCNNGG	3 cut(s)	986, 1738, 2037
BsaWI	WCCGGW	1 cut(s)	1916
Bsc4I	CCNNNNNNNGG	5 cut(s)	710, 1242, 1296, 1904, 2014
Bse118I	RCCGGY	1 cut(s)	767
Bse1I	ACTGG	3 cut(s)	364, 833, 1789
BseBI	CCWGG	2 cut(s)	316, 1739
BseDI	CCNNGG	3 cut(s)	986, 1738, 2037
BseGI	GGATG	4 cut(s)	663, 967, 1268, 1519
BseLI	CCNNNNNNNGG	5 cut(s)	710, 1242, 1296, 1904, 2014
BseMII	CTCAG	4 cut(s)	103, 307, 333, 1320
BseNI	ACTGG	3 cut(s)	364, 833, 1789
BseRI	GAGGAG	2 cut(s)	67, 1901
BseXI	GCAGC	4 cut(s)	285, 350, 1838, 2077
BseYI	CCCAGC	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	804
BshFI	GGCC	7 cut(s)	94, 985, 995, 1070, 1400, 1667, 2006
BsiHKAI	GWGCWC	1 cut(s)	1084
BsiSI	CCGG	2 cut(s)	768, 1917
BslI	CCNNNNNNNGG	5 cut(s)	710, 1242, 1296, 1904, 2014
BsmAI	GTCTC	7 cut(s)	1005, 1309, 1487, 1785, 1800, 1817, 1869
BsnI	GGCC	7 cut(s)	94, 985, 995, 1070, 1400, 1667, 2006
Bso31I	GGTCTC	4 cut(s)	1005, 1785, 1800, 1817
Bsp1286I	GDGCHC	2 cut(s)	197, 1084
Bsp1407I	TGTACA	1 cut(s)	1110
Bsp143I	GATC	5 cut(s)	829, 1017, 1198, 1687, 1705
BspACI	CCGC	4 cut(s)	46, 802, 1296, 1546
BspANI	GGCC	7 cut(s)	94, 985, 995, 1070, 1400, 1667, 2006
BspCNI	CTCAG	4 cut(s)	102, 306, 334, 1319
BspFNI	CGCG	1 cut(s)	804
BspLI	GGNNCC	2 cut(s)	1651, 2007
BspPI	GGATC	1 cut(s)	824
BspQI	GCTCTTC	2 cut(s)	41, 967
BspTNI	GGTCTC	4 cut(s)	1005, 1785, 1800, 1817
BsrBI	CCGCTC	1 cut(s)	1546
BsrFI	RCCGGY	1 cut(s)	767
BsrGI	TGTACA	1 cut(s)	1110
BsrI	ACTGG	3 cut(s)	364, 833, 1789
BssAI	RCCGGY	1 cut(s)	767
BssECI	CCNNGG	3 cut(s)	986, 1738, 2037
BssMI	GATC	5 cut(s)	829, 1017, 1198, 1687, 1705
BssT1I	CCWWGG	2 cut(s)	986, 2037
Bst2UI	CCWGG	2 cut(s)	316, 1739
Bst4CI	ACNGT	2 cut(s)	1601, 1773
Bst6I	CTCTTC	3 cut(s)	34, 41, 967
BstAUI	TGTACA	1 cut(s)	1110
BstC8I	GCNNGC	3 cut(s)	765, 993, 1084
BstDEI	CTNAG	8 cut(s)	89, 293, 342, 365, 978, 1306, 1524, 2094
BstEII	GGTNACC	2 cut(s)	1045, 2073
BstF5I	GGATG	4 cut(s)	663, 967, 1268, 1519
BstFNI	CGCG	1 cut(s)	804
BstHHI	GCGC	2 cut(s)	806, 825
BstKTI	GATC	5 cut(s)	832, 1020, 1201, 1690, 1708
BstMAI	GTCTC	7 cut(s)	1005, 1309, 1487, 1785, 1800, 1817, 1869
BstMBI	GATC	5 cut(s)	829, 1017, 1198, 1687, 1705
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 1835
BstNI	CCWGG	2 cut(s)	316, 1739
BstNSI	RCATGY	1 cut(s)	1847
BstPAI	GACNNNNGTC	1 cut(s)	1947
BstPI	GGTNACC	2 cut(s)	1045, 2073
BstSCI	CCNGG	2 cut(s)	314, 1737
BstSFI	CTRYAG	1 cut(s)	1291
BstUI	CGCG	1 cut(s)	804
BstV1I	GCAGC	4 cut(s)	285, 350, 1838, 2077
BstV2I	GAAGAC	2 cut(s)	231, 1023
BstXI	CCANNNNNNTGG	1 cut(s)	1791
BsuRI	GGCC	7 cut(s)	94, 985, 995, 1070, 1400, 1667, 2006
BtsCI	GGATG	4 cut(s)	663, 967, 1268, 1519
BtsI	GCAGTG	1 cut(s)	2052
BtsIMutI	CAGTG	4 cut(s)	840, 1194, 1796, 2052
Cac8I	GCNNGC	3 cut(s)	765, 993, 1084
CfoI	GCGC	2 cut(s)	806, 825
Cfr10I	RCCGGY	1 cut(s)	767
Cfr13I	GGNCC	2 cut(s)	1068, 2005
CseI	GACGC	1 cut(s)	761
Csp6I	GTAC	2 cut(s)	1111, 1407
CviAII	CATG	8 cut(s)	170, 937, 1225, 1273, 1844, 1922, 2000, 2055
CviQI	GTAC	2 cut(s)	1111, 1407
DdeI	CTNAG	8 cut(s)	89, 293, 342, 365, 978, 1306, 1524, 2094
DpnI	GATC	5 cut(s)	831, 1019, 1200, 1689, 1707
DpnII	GATC	5 cut(s)	829, 1017, 1198, 1687, 1705
DraI	TTTAAA	2 cut(s)	393, 502
Eam1104I	CTCTTC	3 cut(s)	34, 41, 967
EarI	CTCTTC	3 cut(s)	34, 41, 967
Ecl136II	GAGCTC	1 cut(s)	1082
Eco130I	CCWWGG	2 cut(s)	986, 2037
Eco147I	AGGCCT	2 cut(s)	985, 1667
Eco24I	GRGCYC	2 cut(s)	197, 1084
Eco31I	GGTCTC	4 cut(s)	1005, 1785, 1800, 1817
Eco53kI	GAGCTC	1 cut(s)	1082
Eco57I	CTGAAG	1 cut(s)	1597
Eco91I	GGTNACC	2 cut(s)	1045, 2073
EcoICRI	GAGCTC	1 cut(s)	1082
EcoO109I	RGGNCCY	1 cut(s)	2005
EcoO65I	GGTNACC	2 cut(s)	1045, 2073
EcoRI	GAATTC	1 cut(s)	1231
EcoRII	CCWGG	2 cut(s)	314, 1737
EcoT14I	CCWWGG	2 cut(s)	986, 2037
EcoT22I	ATGCAT	1 cut(s)	1057
EcoT38I	GRGCYC	2 cut(s)	197, 1084
ErhI	CCWWGG	2 cut(s)	986, 2037
FaeI	CATG	8 cut(s)	173, 940, 1228, 1276, 1847, 1925, 2003, 2058
FatI	CATG	8 cut(s)	169, 936, 1224, 1272, 1843, 1921, 1999, 2054
FauI	CCCGC	2 cut(s)	1289, 1539
FauNDI	CATATG	1 cut(s)	757
FbaI	TGATCA	2 cut(s)	1017, 1198
Fnu4HI	GCNGC	4 cut(s)	274, 339, 1827, 2091
FokI	GGATG	4 cut(s)	670, 974, 1255, 1526
FriOI	GRGCYC	2 cut(s)	197, 1084
Fsp4HI	GCNGC	4 cut(s)	274, 339, 1827, 2091
FspBI	CTAG	7 cut(s)	81, 654, 807, 1442, 1733, 1952, 2067
GlaI	GCGC	2 cut(s)	805, 824
GluI	GCNGC	4 cut(s)	274, 339, 1827, 2091
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	7 cut(s)	94, 985, 995, 1070, 1400, 1667, 2006
HapII	CCGG	2 cut(s)	768, 1917
HgaI	GACGC	1 cut(s)	761
HhaI	GCGC	2 cut(s)	806, 825
Hin1II	CATG	8 cut(s)	173, 940, 1228, 1276, 1847, 1925, 2003, 2058
Hin6I	GCGC	2 cut(s)	804, 823
HinP1I	GCGC	2 cut(s)	804, 823
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	1 cut(s)	1559
HinfI	GANTC	7 cut(s)	236, 311, 344, 859, 1877, 1967, 2063
HpaII	CCGG	2 cut(s)	768, 1917
HphI	GGTGA	6 cut(s)	118, 416, 937, 1057, 1103, 2067
Hpy166II	GTNNAC	4 cut(s)	778, 901, 1111, 1699
Hpy188I	TCNGA	8 cut(s)	106, 235, 1104, 1237, 1309, 1630, 1654, 1942
Hpy8I	GTNNAC	4 cut(s)	778, 901, 1111, 1699
HpyCH4III	ACNGT	2 cut(s)	1601, 1773
HpyCH4IV	ACGT	1 cut(s)	1322
HpyCH4V	TGCA	6 cut(s)	845, 1055, 1539, 1674, 1838, 2045
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 1835
HpyF3I	CTNAG	8 cut(s)	89, 293, 342, 365, 978, 1306, 1524, 2094
HpySE526I	ACGT	1 cut(s)	1322
Hsp92II	CATG	8 cut(s)	173, 940, 1228, 1276, 1847, 1925, 2003, 2058
HspAI	GCGC	2 cut(s)	804, 823
Ksp22I	TGATCA	2 cut(s)	1017, 1198
Kzo9I	GATC	5 cut(s)	829, 1017, 1198, 1687, 1705
LguI	GCTCTTC	2 cut(s)	41, 967
LmnI	GCTCC	2 cut(s)	1888, 1996
Lsp1109I	GCAGC	4 cut(s)	285, 350, 1838, 2077
LweI	GCATC	7 cut(s)	415, 690, 952, 1064, 1087, 1634, 1978
MaeI	CTAG	7 cut(s)	81, 654, 807, 1442, 1733, 1952, 2067
MaeII	ACGT	1 cut(s)	1322
MaeIII	GTNAC	9 cut(s)	404, 532, 625, 730, 835, 1045, 1968, 2047, 2073
MalI	GATC	5 cut(s)	831, 1019, 1200, 1689, 1707
MbiI	CCGCTC	1 cut(s)	1546
MboI	GATC	5 cut(s)	829, 1017, 1198, 1687, 1705
MboII	GAAGA	9 cut(s)	21, 28, 63, 231, 310, 709, 984, 1023, 1240
MfeI	CAATTG	1 cut(s)	1675
MhlI	GDGCHC	2 cut(s)	197, 1084
MluCI	AATT	9 cut(s)	150, 877, 1002, 1039, 1231, 1445, 1639, 1675, 1908
MlyI	GAGTC	4 cut(s)	245, 353, 1976, 2072
MmeI	TCCRAC	3 cut(s)	939, 1808, 2040
Mph1103I	ATGCAT	1 cut(s)	1057
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	8 cut(s)	392, 453, 501, 612, 855, 1638, 1854, 1911
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	2 cut(s)	768, 1917
MspR9I	CCNGG	2 cut(s)	316, 1739
MssI	GTTTAAAC	1 cut(s)	502
MunI	CAATTG	1 cut(s)	1675
MvaI	CCWGG	2 cut(s)	316, 1739
MvnI	CGCG	1 cut(s)	804
MwoI	GCNNNNNNNGC	2 cut(s)	225, 1835
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	5 cut(s)	829, 1017, 1198, 1687, 1705
NlaIII	CATG	8 cut(s)	173, 940, 1228, 1276, 1847, 1925, 2003, 2058
NlaIV	GGNNCC	2 cut(s)	1651, 2007
NmuCI	GTSAC	7 cut(s)	404, 532, 835, 1045, 1968, 2047, 2073
NsiI	ATGCAT	1 cut(s)	1057
NspI	RCATGY	1 cut(s)	1847
PceI	AGGCCT	2 cut(s)	985, 1667
PciI	ACATGT	1 cut(s)	1843
PciSI	GCTCTTC	2 cut(s)	41, 967
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	311, 859, 1877
PkrI	GCNGC	4 cut(s)	275, 340, 1828, 2092
PleI	GAGTC	4 cut(s)	244, 352, 1975, 2071
PmeI	GTTTAAAC	1 cut(s)	502
PpsI	GAGTC	4 cut(s)	244, 352, 1975, 2071
PscI	ACATGT	1 cut(s)	1843
PshAI	GACNNNNGTC	1 cut(s)	1947
PshBI	ATTAAT	2 cut(s)	1854, 1911
PsiI	TTATAA	1 cut(s)	948
Psp124BI	GAGCTC	1 cut(s)	1084
Psp6I	CCWGG	2 cut(s)	314, 1737
PspEI	GGTNACC	2 cut(s)	1045, 2073
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	314, 1737
PspN4I	GGNNCC	2 cut(s)	1651, 2007
PspPI	GGNCC	2 cut(s)	1068, 2005
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	2 cut(s)	1112, 1408
RsaNI	GTAC	2 cut(s)	1111, 1407
SacI	GAGCTC	1 cut(s)	1084
SapI	GCTCTTC	2 cut(s)	41, 967
SaqAI	TTAA	8 cut(s)	392, 453, 501, 612, 855, 1638, 1854, 1911
SatI	GCNGC	4 cut(s)	274, 339, 1827, 2091
Sau3AI	GATC	5 cut(s)	829, 1017, 1198, 1687, 1705
Sau96I	GGNCC	2 cut(s)	1068, 2005
SchI	GAGTC	4 cut(s)	245, 353, 1976, 2072
ScrFI	CCNGG	2 cut(s)	316, 1739
SduI	GDGCHC	2 cut(s)	197, 1084
SfaNI	GCATC	7 cut(s)	415, 690, 952, 1064, 1087, 1634, 1978
SfcI	CTRYAG	1 cut(s)	1291
SmlI	CTYRAG	3 cut(s)	599, 1751, 1805
SmoI	CTYRAG	3 cut(s)	599, 1751, 1805
Sse9I	AATT	9 cut(s)	150, 877, 1002, 1039, 1231, 1445, 1639, 1675, 1908
SseBI	AGGCCT	2 cut(s)	985, 1667
SsiI	CCGC	4 cut(s)	46, 802, 1296, 1546
SspI	AATATT	1 cut(s)	1937
SspMI	CTAG	7 cut(s)	81, 654, 807, 1442, 1733, 1952, 2067
SstI	GAGCTC	1 cut(s)	1084
StuI	AGGCCT	2 cut(s)	985, 1667
StyD4I	CCNGG	2 cut(s)	314, 1737
StyI	CCWWGG	2 cut(s)	986, 2037
TaaI	ACNGT	2 cut(s)	1601, 1773
TaiI	ACGT	1 cut(s)	1325
TaqI	TCGA	2 cut(s)	635, 1704
TasI	AATT	9 cut(s)	150, 877, 1002, 1039, 1231, 1445, 1639, 1675, 1908
TatI	WGTACW	1 cut(s)	1110
TfiI	GAWTC	3 cut(s)	311, 859, 1877
Tru1I	TTAA	8 cut(s)	392, 453, 501, 612, 855, 1638, 1854, 1911
Tru9I	TTAA	8 cut(s)	392, 453, 501, 612, 855, 1638, 1854, 1911
TscAI	CASTG	4 cut(s)	840, 1201, 1796, 2052
TseFI	GTSAC	7 cut(s)	404, 532, 835, 1045, 1968, 2047, 2073
TseI	GCWGC	4 cut(s)	273, 338, 1826, 2090
Tsp45I	GTSAC	7 cut(s)	404, 532, 835, 1045, 1968, 2047, 2073
TspDTI	ATGAA	5 cut(s)	926, 1136, 1241, 1257, 1530
TspGWI	ACGGA	1 cut(s)	1983
TspRI	CASTG	4 cut(s)	840, 1201, 1796, 2052
VspI	ATTAAT	2 cut(s)	1854, 1911
XapI	RAATTY	3 cut(s)	150, 1002, 1231
XbaI	TCTAGA	3 cut(s)	80, 1732, 2066
XceI	RCATGY	1 cut(s)	1847
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	7 cut(s)	81, 654, 807, 1442, 1733, 1952, 2067
Zsp2I	ATGCAT	1 cut(s)	1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.