Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Reverse (-)

55388558 .. 55389283

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58885

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCCTACACAGGGAACCTCCATTCACCAAGCTAAACCATGGTCTACCCATGACGTCGAAGTGAATGATGAGAGGTTAGAATACCATGCTCTCCATGCTCTCCACCTGTTTGATAAAATGCCTAGACCAAATGTGTACTCATGGAATGCTATATTGGTTTGTTATTGTAAAGCTGAAGGGTTAATGGATGCTAGAGAATTGTTTCTAAACATGCCTGAGAGGAACATTGAAAAGGGGTTGGGTGTTTATGATGCCATGATTTCAGAGGGAATGGTGCCTACACATTTTACATTAGCAATTTTGTTCAGTGCGTGTAGAGGGTGGTTGGATGTGGAGAAGGGTAGGAAATGTCATAGCCTTGTGGAGCAAATTGGCCTTGAGGTAAATGTGTATGTAGGGAATACTTTACTCTGCATGTATGCTAAGTGTGGAGTCATTAAGGATGCAATGCAGGTTTTCGGTGAAATGGCTAAGCCGAATGAGATTACTTTTACGGCTATGACAGGTGAGTTAAAGAAGATAGACAAAGTCGTGGAGGCTTTGGAAATGTTTAAGCTGATATGGAGGAAAGGGGTGCGTATTGATTCTGTTTTGTTGTTTGTTGATATTAAAAGAGACCCCTTGTTTGTTGCTCTTTCACTTCTGAAGACAATTGTTAAACGTTCTGGAGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

225

Amino Acids

25.55

Weight (kDa)

6.66

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	57
Acc36I	ACCTGC	1 cut(s)	442
AccB1I	GGYRCC	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	44
AclI	AACGTT	1 cut(s)	661
AcuI	CTGAAG	2 cut(s)	195, 665
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	230
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	3 cut(s)	32, 173, 556
AluI	AGCT	3 cut(s)	32, 173, 556
Alw26I	GTCTC	1 cut(s)	609
AoxI	GGCC	1 cut(s)	373
ArsI	GACNNNNNNTTYG	2 cut(s)	608, 640
Asp700I	GAANNNNTTC	1 cut(s)	201
AsuHPI	GGTGA	3 cut(s)	17, 473, 518
BanI	GGYRCC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	653
BceAI	ACGGC	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	609
BfaI	CTAG	2 cut(s)	123, 192
BfuAI	ACCTGC	1 cut(s)	442
BlpI	GCTNAGC	1 cut(s)	471
BmiI	GGNNCC	2 cut(s)	16, 276
BmsI	GCATC	3 cut(s)	178, 241, 433
BpiI	GAAGAC	1 cut(s)	653
Bpu1102I	GCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	398
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	609
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	3 cut(s)	193, 334, 448
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	375
BshNI	GGYRCC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	609
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	375
Bso31I	GGTCTC	1 cut(s)	609
Bsp1720I	GCTNAGC	1 cut(s)	471
Bsp19I	CCATGG	1 cut(s)	38
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	16, 276
BspMI	ACCTGC	1 cut(s)	442
BspT107I	GGYRCC	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	609
BsrDI	GCAATG	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	38
BssNI	GRCGYC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	54
BstDEI	CTNAG	3 cut(s)	216, 423, 471
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	3 cut(s)	193, 334, 448
BstMAI	GTCTC	1 cut(s)	609
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNSI	RCATGY	2 cut(s)	214, 418
BstV2I	GAAGAC	1 cut(s)	653
BsuRI	GGCC	1 cut(s)	375
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	193, 334, 448
BtsIMutI	CAGTG	1 cut(s)	313
BveI	ACCTGC	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	8 cut(s)	39, 50, 86, 95, 141, 211, 256, 415
CviJI	RGCY	9 cut(s)	32, 173, 357, 375, 470, 475, 497, 539, 556
CviKI_1	RGCY	9 cut(s)	32, 173, 357, 375, 470, 475, 497, 539, 556
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	3 cut(s)	216, 423, 471
Eco130I	CCWWGG	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	609
Eco57I	CTGAAG	2 cut(s)	195, 665
EcoT14I	CCWWGG	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	8 cut(s)	42, 53, 89, 98, 144, 214, 259, 418
FatI	CATG	8 cut(s)	38, 49, 85, 94, 140, 210, 255, 414
FblI	GTMKAC	1 cut(s)	44
FokI	GGATG	3 cut(s)	200, 341, 455
FspBI	CTAG	2 cut(s)	123, 192
HaeIII	GGCC	1 cut(s)	375
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	8 cut(s)	42, 53, 89, 98, 144, 214, 259, 418
HinfI	GANTC	2 cut(s)	432, 584
HphI	GGTGA	3 cut(s)	17, 473, 518
Hpy166II	GTNNAC	2 cut(s)	45, 136
Hpy188I	TCNGA	2 cut(s)	265, 645
Hpy188III	TCNNGA	1 cut(s)	666
Hpy8I	GTNNAC	2 cut(s)	45, 136
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	170, 331
HpyCH4IV	ACGT	2 cut(s)	54, 661
HpyCH4V	TGCA	3 cut(s)	414, 446, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	3 cut(s)	216, 423, 471
HpySE526I	ACGT	2 cut(s)	54, 661
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	8 cut(s)	42, 53, 89, 98, 144, 214, 259, 418
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	5 cut(s)	119, 228, 437, 489, 651
LweI	GCATC	3 cut(s)	178, 241, 433
MaeI	CTAG	2 cut(s)	123, 192
MaeII	ACGT	2 cut(s)	54, 661
MboII	GAAGA	2 cut(s)	529, 658
MfeI	CAATTG	1 cut(s)	651
MluCI	AATT	4 cut(s)	197, 297, 369, 651
MlyI	GAGTC	1 cut(s)	441
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	8 cut(s)	28, 66, 213, 259, 311, 373, 529, 558
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	6 cut(s)	182, 438, 512, 552, 609, 657
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	38
NlaIII	CATG	8 cut(s)	42, 53, 89, 98, 144, 214, 259, 418
NlaIV	GGNNCC	2 cut(s)	16, 276
NspI	RCATGY	2 cut(s)	214, 418
PctI	GAATGC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	584
PflFI	GACNNNGTC	1 cut(s)	527
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
Psp1406I	AACGTT	1 cut(s)	661
PspN4I	GGNNCC	2 cut(s)	16, 276
PsyI	GACNNNGTC	1 cut(s)	527
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SaqAI	TTAA	6 cut(s)	182, 438, 512, 552, 609, 657
SchI	GAGTC	1 cut(s)	441
SfaNI	GCATC	3 cut(s)	178, 241, 433
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	4 cut(s)	197, 297, 369, 651
SspMI	CTAG	2 cut(s)	123, 192
StyI	CCWWGG	1 cut(s)	38
TaiI	ACGT	2 cut(s)	57, 664
TaqI	TCGA	1 cut(s)	57
TasI	AATT	4 cut(s)	197, 297, 369, 651
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	6 cut(s)	182, 438, 512, 552, 609, 657
Tru9I	TTAA	6 cut(s)	182, 438, 512, 552, 609, 657
TscAI	CASTG	1 cut(s)	313
TspRI	CASTG	1 cut(s)	313
Tth111I	GACNNNGTC	1 cut(s)	527
XceI	RCATGY	2 cut(s)	214, 418
XmiI	GTMKAC	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	2 cut(s)	123, 192
ZraI	GACGTC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.