Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Forward (+)

496619 .. 498965

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG007000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1857 bp

ATGTTTCTTTACAAGAAACCCAGAGTCCAGATGTCCCAAGACTTGAAAACCCTCCAAGCCCAGATGGAAATTCCTCGTCCTCGTCCTCGTCCAAAAGCTATATCTGGGTCAATCCCAGCAGCCCCAGAGCTTCACAGCTCAGGAAGAAATCCTACGATTCCAGGTGACAGGGTTTTGGAACAAGATGCCGTGGTTGTTCTCAATAATATGGTTAATCCCGAAAATGCGTTGCTTGTTCTCAAGTACTTTCAGCAGAGGTTTAAACCAAAGAGGGAAGTGGTTCTCTATAATGTGACCTTGAAAGTTTTTAGGAAGTGTAAGGATTTGGAGAGAGCAGAGAAGCTGTTTTATGAGATACTTGAGAGAGGTGTTAAACCTGATAATGTTACATTTTCAACTATGATTAGCTGTGCTAGGATGTGTTATCTGCCTGATAAGGCTGTGGAGTGGTTTGAGAAGATGCCTACTTTTGGGTGTAATCCCGATGATGTTACCTATTCGGCTATGATTGACGCATATGGGCGTGCCGGTAATGTTGACAAGGCTTTTAGCTTGTATGACCGCGCTAGGACAGAGAAGTGGCGCATTGATCCAGTGACATTTGCAACGTTGATTAAGATTCACGGGCAATCGGGGAATTATGATGGGTGCCTGAATGTTTATGAGGAAATGAAGGCTATTGGGGTGAAGCCGAACATGGTTATTTATAATACTTTGTTGGATGCTATGGGAAGAGCTAAGAGGCCTTGGCAGGCCAAGAAAATTTTCCGAGAGATGATCAGCAAGGGGTCTTCGCCAAATTGGGTGACCTATGCATCTCTGCTACGGGCCTTTGGTAGAGCTCGCTATGGTGATGATGCTCTCAATGTGTACAAGGAGATGAAGGAGAAGGGAATGGAGTTGAATGTCATTCTCTACAACACCCTTTTGTCTATGTGTGCTGATATTGGCTACACTGATCAAGCTATTGAGATTTTCAAAGACATGAAGAGTTCCGAAACTTGGAAGCCTGATAGTTGGACATTTTCATCCATGATTACCATATATTCCTGTAGCGGGAAAGTCTCAGAGGCAGAGAGGACGTTGAATGAGATGGTGGAAGCTGGTTTCCAGCCTAATATCTTTATTTTGACATCTCTGATACAATGCTATGGGAAGGCCAAGCGTACTGATGATGTTGTCAGGGCATTCAATCAACTACTAGAATTGGGCATAACTCCCGATGAGCGTTTCTGTGGTTGTCTCCTGAATGTGATGACCCAAACACCAAAGGATGAACTATCTAAGCTGACTGATTGCATTGAGCGGGGTAATGAGAAGCTTGGATATGTTGTAAGACTTCTGATAGAGAAGCAAGACAGTAGTGAAAACTTCAGGAAGGAAGCATCAGAACTTTTTAATTCAGTTGGTTCCGATGTAAAGAAGGCCTACTGCAATTGCTTGATTGATCTTTGTGTGAACCTCGATCTCTTGGAGAGAGCCTGTGAGCTTCTAGACCTGGGGCTTATACTTGAGATATACACAGATATACAGTCAAGGTCTCCAACCCAATGGTCTCTGTATCTCAAGGGTCTCTCTCTTGGGGCAGCCCTTACTGCATTACATGTTTGGATTAATGACTTGTCTCGTTCGCTGGAATCTGGGGAGGAGCTTCCACCTCTGCTTGGAATTAATACCGGACATGGAAAACATAAATATTCAGACAAAGGTCTAGCGAGTGTGTTCGAGTCACATTTGAAGGAAGTAGATGCTCCGTTCCATGAGGCCCCAGACAAGGTTGGCTGGTTTTTGACTACCAAGGTTGCAGTGACATCATGGTTGGAGTCTAGAAGGTCACCACAAGTAGTTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

618

Amino Acids

70.01

Weight (kDa)

7.78

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	92 - 137	8.7e-10	PPR repeat family
PPR_2	PF13041	144 - 173	2.5e-06	PPR repeat family
PPR_1	PF12854	158 - 188	3.7e-10	PPR repeat
PPR_2	PF13041	164 - 206	6.7e-07	PPR repeat family
PPR	PF01535	164 - 188	4.7e-07	PPR repeat
PPR_long	PF17177	168 - 317	2.2e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	195 - 244	1e-07	Pentatricopeptide repeat domain
TPR_24	PF23276	209 - 329	9.5e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	228 - 259	1.4e-06	PPR repeat
PPR_2	PF13041	231 - 279	5.9e-12	PPR repeat family
PPR_3	PF13812	254 - 314	4.8e-12	Pentatricopeptide repeat domain
PPR	PF01535	269 - 299	6.6e-06	PPR repeat
PPR_long	PF17177	286 - 423	2.1e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	290 - 349	5e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	302 - 347	2.3e-09	PPR repeat family
PPR	PF01535	341 - 370	7.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	708
AccB1I	GGYRCC	1 cut(s)	648
AccBSI	CCGCTC	1 cut(s)	1306
AccII	CGCG	1 cut(s)	564
AciI	CCGC	3 cut(s)	562, 1056, 1306
AclI	AACGTT	1 cut(s)	608
AclWI	GGATC	1 cut(s)	584
AcsI	RAATTY	2 cut(s)	69, 762
AcuI	CTGAAG	1 cut(s)	1357
AfaI	GTAC	3 cut(s)	245, 872, 1168
AfiI	CCNNNNNNNGG	5 cut(s)	470, 1002, 1056, 1664, 1774
AflIII	ACRYGT	1 cut(s)	1603
AgsI	TTSAA	8 cut(s)	46, 301, 396, 904, 979, 1087, 1192, 1738
AjnI	CCWGG	2 cut(s)	160, 1497
AjuI	GAANNNNNNNTTGG	2 cut(s)	749, 781
Alw21I	GWGCWC	1 cut(s)	844
Alw26I	GTCTC	6 cut(s)	1069, 1247, 1545, 1560, 1577, 1629
AlwI	GGATC	1 cut(s)	584
AoxI	GGCC	6 cut(s)	743, 753, 828, 1158, 1425, 1764
ApeKI	GCWGC	3 cut(s)	119, 1586, 1850
ApoI	RAATTY	2 cut(s)	69, 762
AseI	ATTAAT	2 cut(s)	1614, 1671
Asp700I	GAANNNNTTC	2 cut(s)	279, 764
AspLEI	GCGC	2 cut(s)	566, 585
AspS9I	GGNCC	2 cut(s)	828, 1765
AsuHPI	GGTGA	5 cut(s)	176, 697, 817, 863, 1827
BanI	GGYRCC	1 cut(s)	648
BanII	GRGCYC	1 cut(s)	844
BarI	GAAGNNNNNNTAC	2 cut(s)	136, 168
BbsI	GAAGAC	1 cut(s)	783
Bbv12I	GWGCWC	1 cut(s)	844
BbvI	GCAGC	3 cut(s)	131, 1598, 1837
BccI	CCATC	3 cut(s)	58, 638, 1087
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	162, 1499
BclI	TGATCA	2 cut(s)	777, 958
BcoDI	GTCTC	6 cut(s)	1069, 1247, 1545, 1560, 1577, 1629
BfaI	CTAG	6 cut(s)	414, 567, 1202, 1493, 1712, 1827
BfmI	CTRYAG	1 cut(s)	1051
BisI	GCNGC	3 cut(s)	120, 1587, 1851
BlsI	GCNGC	3 cut(s)	121, 1588, 1852
BmcAI	AGTACT	1 cut(s)	245
Bme1390I	CCNGG	2 cut(s)	162, 1499
BmgT120I	GGNCC	2 cut(s)	828, 1765
BmiI	GGNNCC	3 cut(s)	650, 1411, 1767
BmrFI	CCNGG	2 cut(s)	162, 1499
BmsI	GCATC	7 cut(s)	175, 450, 712, 824, 847, 1394, 1738
BoxI	GACNNNNGTC	1 cut(s)	1707
BpiI	GAAGAC	1 cut(s)	783
Bpu10I	CCTNAGC	1 cut(s)	139
BpuEI	CTTGAG	4 cut(s)	224, 380, 1532, 1550
BsaI	GGTCTC	3 cut(s)	1545, 1560, 1577
BsaJI	CCNNGG	4 cut(s)	189, 746, 1498, 1797
BsaWI	WCCGGW	1 cut(s)	1676
Bsc4I	CCNNNNNNNGG	5 cut(s)	470, 1002, 1056, 1664, 1774
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	1 cut(s)	593
BseBI	CCWGG	2 cut(s)	162, 1499
BseDI	CCNNGG	4 cut(s)	189, 746, 1498, 1797
BseGI	GGATG	4 cut(s)	423, 727, 1028, 1279
BseLI	CCNNNNNNNGG	5 cut(s)	470, 1002, 1056, 1664, 1774
BseMII	CTCAG	2 cut(s)	153, 1080
BseNI	ACTGG	1 cut(s)	593
BseRI	GAGGAG	1 cut(s)	1661
BseXI	GCAGC	3 cut(s)	131, 1598, 1837
BseYI	CCCAGC	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	564
BshFI	GGCC	6 cut(s)	745, 755, 830, 1160, 1427, 1766
BshNI	GGYRCC	1 cut(s)	648
BsiHKAI	GWGCWC	1 cut(s)	844
BsiSI	CCGG	2 cut(s)	528, 1677
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	5 cut(s)	470, 1002, 1056, 1664, 1774
BsmAI	GTCTC	6 cut(s)	1069, 1247, 1545, 1560, 1577, 1629
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	1187
BsnI	GGCC	6 cut(s)	745, 755, 830, 1160, 1427, 1766
Bso31I	GGTCTC	3 cut(s)	1545, 1560, 1577
Bsp1286I	GDGCHC	1 cut(s)	844
Bsp1407I	TGTACA	1 cut(s)	870
Bsp143I	GATC	5 cut(s)	589, 777, 958, 1447, 1465
BspACI	CCGC	3 cut(s)	562, 1056, 1306
BspANI	GGCC	6 cut(s)	745, 755, 830, 1160, 1427, 1766
BspCNI	CTCAG	2 cut(s)	152, 1079
BspFNI	CGCG	1 cut(s)	564
BspLI	GGNNCC	3 cut(s)	650, 1411, 1767
BspPI	GGATC	1 cut(s)	584
BspQI	GCTCTTC	1 cut(s)	727
BspT107I	GGYRCC	1 cut(s)	648
BspTNI	GGTCTC	3 cut(s)	1545, 1560, 1577
BsrBI	CCGCTC	1 cut(s)	1306
BsrFI	RCCGGY	1 cut(s)	527
BsrGI	TGTACA	1 cut(s)	870
BsrI	ACTGG	1 cut(s)	593
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	4 cut(s)	189, 746, 1498, 1797
BssMI	GATC	5 cut(s)	589, 777, 958, 1447, 1465
BssT1I	CCWWGG	2 cut(s)	746, 1797
Bst2UI	CCWGG	2 cut(s)	162, 1499
Bst4CI	ACNGT	2 cut(s)	1361, 1533
Bst6I	CTCTTC	2 cut(s)	727, 983
BstAUI	TGTACA	1 cut(s)	870
BstC8I	GCNNGC	3 cut(s)	525, 753, 844
BstDEI	CTNAG	5 cut(s)	139, 738, 1066, 1284, 1854
BstDSI	CCRYGG	1 cut(s)	189
BstEII	GGTNACC	2 cut(s)	805, 1833
BstF5I	GGATG	4 cut(s)	423, 727, 1028, 1279
BstFNI	CGCG	1 cut(s)	564
BstHHI	GCGC	2 cut(s)	566, 585
BstKTI	GATC	5 cut(s)	592, 780, 961, 1450, 1468
BstMAI	GTCTC	6 cut(s)	1069, 1247, 1545, 1560, 1577, 1629
BstMBI	GATC	5 cut(s)	589, 777, 958, 1447, 1465
BstMWI	GCNNNNNNNGC	1 cut(s)	1595
BstNI	CCWGG	2 cut(s)	162, 1499
BstNSI	RCATGY	1 cut(s)	1607
BstPAI	GACNNNNGTC	1 cut(s)	1707
BstPI	GGTNACC	2 cut(s)	805, 1833
BstSCI	CCNGG	2 cut(s)	160, 1497
BstSFI	CTRYAG	1 cut(s)	1051
BstUI	CGCG	1 cut(s)	564
BstV1I	GCAGC	3 cut(s)	131, 1598, 1837
BstV2I	GAAGAC	1 cut(s)	783
BstXI	CCANNNNNNTGG	1 cut(s)	1551
BsuRI	GGCC	6 cut(s)	745, 755, 830, 1160, 1427, 1766
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	4 cut(s)	423, 727, 1028, 1279
BtsI	GCAGTG	1 cut(s)	1812
BtsIMutI	CAGTG	3 cut(s)	600, 954, 1812
Cac8I	GCNNGC	3 cut(s)	525, 753, 844
CfoI	GCGC	2 cut(s)	566, 585
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	828, 1765
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	3 cut(s)	244, 871, 1167
CviAII	CATG	7 cut(s)	697, 985, 1033, 1604, 1682, 1760, 1815
CviQI	GTAC	3 cut(s)	244, 871, 1167
DdeI	CTNAG	5 cut(s)	139, 738, 1066, 1284, 1854
DpnI	GATC	5 cut(s)	591, 779, 960, 1449, 1467
DpnII	GATC	5 cut(s)	589, 777, 958, 1447, 1465
DraI	TTTAAA	1 cut(s)	262
Eam1104I	CTCTTC	2 cut(s)	727, 983
EarI	CTCTTC	2 cut(s)	727, 983
Ecl136II	GAGCTC	1 cut(s)	842
Eco130I	CCWWGG	2 cut(s)	746, 1797
Eco147I	AGGCCT	2 cut(s)	745, 1427
Eco24I	GRGCYC	1 cut(s)	844
Eco31I	GGTCTC	3 cut(s)	1545, 1560, 1577
Eco53kI	GAGCTC	1 cut(s)	842
Eco57I	CTGAAG	1 cut(s)	1357
Eco91I	GGTNACC	2 cut(s)	805, 1833
EcoICRI	GAGCTC	1 cut(s)	842
EcoO109I	RGGNCCY	1 cut(s)	1765
EcoO65I	GGTNACC	2 cut(s)	805, 1833
EcoRII	CCWGG	2 cut(s)	160, 1497
EcoT14I	CCWWGG	2 cut(s)	746, 1797
EcoT22I	ATGCAT	1 cut(s)	817
EcoT38I	GRGCYC	1 cut(s)	844
ErhI	CCWWGG	2 cut(s)	746, 1797
FaeI	CATG	7 cut(s)	700, 988, 1036, 1607, 1685, 1763, 1818
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	7 cut(s)	696, 984, 1032, 1603, 1681, 1759, 1814
FauI	CCCGC	2 cut(s)	1049, 1299
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	2 cut(s)	777, 958
Fnu4HI	GCNGC	3 cut(s)	120, 1587, 1851
FokI	GGATG	4 cut(s)	430, 734, 1015, 1286
FriOI	GRGCYC	1 cut(s)	844
Fsp4HI	GCNGC	3 cut(s)	120, 1587, 1851
FspBI	CTAG	6 cut(s)	414, 567, 1202, 1493, 1712, 1827
GlaI	GCGC	2 cut(s)	565, 584
GluI	GCNGC	3 cut(s)	120, 1587, 1851
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	6 cut(s)	745, 755, 830, 1160, 1427, 1766
HapII	CCGG	2 cut(s)	528, 1677
HgaI	GACGC	1 cut(s)	521
HhaI	GCGC	2 cut(s)	566, 585
Hin1II	CATG	7 cut(s)	700, 988, 1036, 1607, 1685, 1763, 1818
Hin6I	GCGC	2 cut(s)	564, 583
HinP1I	GCGC	2 cut(s)	564, 583
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	1319
HinfI	GANTC	6 cut(s)	24, 157, 619, 1637, 1727, 1823
HpaII	CCGG	2 cut(s)	528, 1677
HphI	GGTGA	5 cut(s)	176, 697, 817, 863, 1827
Hpy166II	GTNNAC	3 cut(s)	538, 871, 1459
Hpy188I	TCNGA	8 cut(s)	770, 997, 1069, 1140, 1344, 1390, 1414, 1702
Hpy188III	TCNNGA	9 cut(s)	28, 141, 218, 482, 1220, 1246, 1375, 1493, 1827
Hpy8I	GTNNAC	3 cut(s)	538, 871, 1459
HpyAV	CCTTC	8 cut(s)	667, 877, 883, 1150, 1372, 1417, 1732, 1824
HpyCH4III	ACNGT	2 cut(s)	1361, 1533
HpyCH4IV	ACGT	2 cut(s)	608, 1082
HpyCH4V	TGCA	6 cut(s)	605, 815, 1299, 1434, 1598, 1805
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1595
HpyF3I	CTNAG	5 cut(s)	139, 738, 1066, 1284, 1854
HpySE526I	ACGT	2 cut(s)	608, 1082
Hsp92II	CATG	7 cut(s)	700, 988, 1036, 1607, 1685, 1763, 1818
HspAI	GCGC	2 cut(s)	564, 583
Ksp22I	TGATCA	2 cut(s)	777, 958
Kzo9I	GATC	5 cut(s)	589, 777, 958, 1447, 1465
LguI	GCTCTTC	1 cut(s)	727
LmnI	GCTCC	2 cut(s)	1648, 1756
Lsp1109I	GCAGC	3 cut(s)	131, 1598, 1837
LweI	GCATC	7 cut(s)	175, 450, 712, 824, 847, 1394, 1738
MaeI	CTAG	6 cut(s)	414, 567, 1202, 1493, 1712, 1827
MaeII	ACGT	2 cut(s)	608, 1082
MaeIII	GTNAC	9 cut(s)	164, 292, 385, 490, 595, 805, 1728, 1807, 1833
MalI	GATC	5 cut(s)	591, 779, 960, 1449, 1467
MbiI	CCGCTC	1 cut(s)	1306
MboI	GATC	5 cut(s)	589, 777, 958, 1447, 1465
MboII	GAAGA	5 cut(s)	156, 469, 744, 783, 1000
MfeI	CAATTG	1 cut(s)	1435
MhlI	GDGCHC	1 cut(s)	844
MluCI	AATT	8 cut(s)	69, 637, 762, 799, 1205, 1399, 1435, 1668
MlyI	GAGTC	3 cut(s)	33, 1736, 1832
MmeI	TCCRAC	4 cut(s)	699, 998, 1568, 1800
Mph1103I	ATGCAT	1 cut(s)	817
MroXI	GAANNNNTTC	2 cut(s)	279, 764
MseI	TTAA	7 cut(s)	213, 261, 372, 615, 1398, 1614, 1671
MspI	CCGG	2 cut(s)	528, 1677
MspR9I	CCNGG	2 cut(s)	162, 1499
MssI	GTTTAAAC	1 cut(s)	262
MunI	CAATTG	1 cut(s)	1435
Mva1269I	GAATGC	1 cut(s)	1187
MvaI	CCWGG	2 cut(s)	162, 1499
MvnI	CGCG	1 cut(s)	564
MwoI	GCNNNNNNNGC	1 cut(s)	1595
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	5 cut(s)	589, 777, 958, 1447, 1465
NlaIII	CATG	7 cut(s)	700, 988, 1036, 1607, 1685, 1763, 1818
NlaIV	GGNNCC	3 cut(s)	650, 1411, 1767
NmuCI	GTSAC	7 cut(s)	164, 292, 595, 805, 1728, 1807, 1833
NsiI	ATGCAT	1 cut(s)	817
NspI	RCATGY	1 cut(s)	1607
PceI	AGGCCT	2 cut(s)	745, 1427
PciI	ACATGT	1 cut(s)	1603
PciSI	GCTCTTC	1 cut(s)	727
PctI	GAATGC	1 cut(s)	1187
PdmI	GAANNNNTTC	2 cut(s)	279, 764
PfeI	GAWTC	3 cut(s)	157, 619, 1637
PkrI	GCNGC	3 cut(s)	121, 1588, 1852
PleI	GAGTC	3 cut(s)	32, 1735, 1831
PmeI	GTTTAAAC	1 cut(s)	262
PpsI	GAGTC	3 cut(s)	32, 1735, 1831
PscI	ACATGT	1 cut(s)	1603
PshAI	GACNNNNGTC	1 cut(s)	1707
PshBI	ATTAAT	2 cut(s)	1614, 1671
PsiI	TTATAA	1 cut(s)	708
Psp124BI	GAGCTC	1 cut(s)	844
Psp1406I	AACGTT	1 cut(s)	608
Psp6I	CCWGG	2 cut(s)	160, 1497
PspEI	GGTNACC	2 cut(s)	805, 1833
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	2 cut(s)	160, 1497
PspN4I	GGNNCC	3 cut(s)	650, 1411, 1767
PspPI	GGNCC	2 cut(s)	828, 1765
RsaI	GTAC	3 cut(s)	245, 872, 1168
RsaNI	GTAC	3 cut(s)	244, 871, 1167
SacI	GAGCTC	1 cut(s)	844
SapI	GCTCTTC	1 cut(s)	727
SaqAI	TTAA	7 cut(s)	213, 261, 372, 615, 1398, 1614, 1671
SatI	GCNGC	3 cut(s)	120, 1587, 1851
Sau3AI	GATC	5 cut(s)	589, 777, 958, 1447, 1465
Sau96I	GGNCC	2 cut(s)	828, 1765
ScaI	AGTACT	1 cut(s)	245
SchI	GAGTC	3 cut(s)	33, 1736, 1832
ScrFI	CCNGG	2 cut(s)	162, 1499
SduI	GDGCHC	1 cut(s)	844
SfaNI	GCATC	7 cut(s)	175, 450, 712, 824, 847, 1394, 1738
SfcI	CTRYAG	1 cut(s)	1051
SmlI	CTYRAG	4 cut(s)	239, 359, 1511, 1565
SmoI	CTYRAG	4 cut(s)	239, 359, 1511, 1565
Sse9I	AATT	8 cut(s)	69, 637, 762, 799, 1205, 1399, 1435, 1668
SseBI	AGGCCT	2 cut(s)	745, 1427
SsiI	CCGC	3 cut(s)	562, 1056, 1306
SspI	AATATT	1 cut(s)	1697
SspMI	CTAG	6 cut(s)	414, 567, 1202, 1493, 1712, 1827
SstI	GAGCTC	1 cut(s)	844
StuI	AGGCCT	2 cut(s)	745, 1427
StyD4I	CCNGG	2 cut(s)	160, 1497
StyI	CCWWGG	2 cut(s)	746, 1797
TaaI	ACNGT	2 cut(s)	1361, 1533
TaiI	ACGT	2 cut(s)	611, 1085
TaqI	TCGA	2 cut(s)	1464, 1725
TasI	AATT	8 cut(s)	69, 637, 762, 799, 1205, 1399, 1435, 1668
TatI	WGTACW	2 cut(s)	243, 870
TfiI	GAWTC	3 cut(s)	157, 619, 1637
Tru1I	TTAA	7 cut(s)	213, 261, 372, 615, 1398, 1614, 1671
Tru9I	TTAA	7 cut(s)	213, 261, 372, 615, 1398, 1614, 1671
TscAI	CASTG	3 cut(s)	600, 961, 1812
TseFI	GTSAC	7 cut(s)	164, 292, 595, 805, 1728, 1807, 1833
TseI	GCWGC	3 cut(s)	119, 1586, 1850
Tsp45I	GTSAC	7 cut(s)	164, 292, 595, 805, 1728, 1807, 1833
TspDTI	ATGAA	5 cut(s)	686, 896, 1001, 1017, 1290
TspGWI	ACGGA	1 cut(s)	1743
TspRI	CASTG	3 cut(s)	600, 961, 1812
VspI	ATTAAT	2 cut(s)	1614, 1671
XapI	RAATTY	2 cut(s)	69, 762
XbaI	TCTAGA	2 cut(s)	1492, 1826
XceI	RCATGY	1 cut(s)	1607
XmnI	GAANNNNTTC	2 cut(s)	279, 764
XspI	CTAG	6 cut(s)	414, 567, 1202, 1493, 1712, 1827
ZrmI	AGTACT	1 cut(s)	245
Zsp2I	ATGCAT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.