Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Forward (+)

14613256 .. 14614840

Gene Structure 1585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G138500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGAAACGTTGAGGGGGTTCTTAGTTTATATGAGAGAGGGAGAGCCAATGGGTGGAAACTAGACCCCAATGCATTTTCTATCTTGGGTAAGATGTTTGGTGAGGCTGGGGACTATGATGGCATTAGGTATGTCTTGCAGGAAATGGCTGCTCTTGGTGTGCAGCCTAATTTGGTTGTGTACAATACTTTGTTAGAGGCAATGGGCAAGGCTAGAAAGCCTGGTTTAGCAAGAAGCTTATTCGAAGAAATAGTGGGATCCGGGCTGAAACCAAATGAGAAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

96

Amino Acids

10.33

Weight (kDa)

6.24

Isoelectric Point (pI)

22.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	54
AclI	AACGTT	1 cut(s)	9
AclWI	GGATC	2 cut(s)	252, 265
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	54
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	1 cut(s)	237
AluI	AGCT	1 cut(s)	237
AlwI	GGATC	2 cut(s)	252, 265
ApeKI	GCWGC	2 cut(s)	149, 163
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	243
BamHI	GGATCC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	136, 175
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	222
BcnI	CCSGG	1 cut(s)	262
BfaI	CTAG	2 cut(s)	62, 213
BisI	GCNGC	2 cut(s)	150, 164
BlsI	GCNGC	2 cut(s)	151, 165
Bme1390I	CCNGG	2 cut(s)	222, 262
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	2 cut(s)	222, 262
Bpu14I	TTCGAA	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	136, 175
BseYI	CCCAGC	1 cut(s)	107
BsgI	GTGCAG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	243
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	2 cut(s)	252, 265
BspT104I	TTCGAA	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	207
BsrGI	TGTACA	1 cut(s)	180
BssMI	GATC	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	222
BstAUI	TGTACA	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	23
BstKTI	GATC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	2 cut(s)	220, 260
BstV1I	GCAGC	2 cut(s)	136, 175
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	181
CviJI	RGCY	8 cut(s)	47, 107, 149, 166, 212, 220, 237, 265
CviKI_1	RGCY	8 cut(s)	47, 107, 149, 166, 212, 220, 237, 265
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	76
FaiI	YATR	5 cut(s)	31, 33, 117, 132, 286
FaqI	GGGAC	1 cut(s)	125
Fnu4HI	GCNGC	2 cut(s)	150, 164
Fsp4HI	GCNGC	2 cut(s)	150, 164
FspBI	CTAG	2 cut(s)	62, 213
GluI	GCNGC	2 cut(s)	150, 164
GsaI	CCCAGC	1 cut(s)	111
HapII	CCGG	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	235
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	3 cut(s)	74, 139, 163
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	257
LpnPI	CCDG	5 cut(s)	93, 125, 207, 234, 274
Lsp1109I	GCAGC	2 cut(s)	136, 175
MaeI	CTAG	2 cut(s)	62, 213
MaeII	ACGT	1 cut(s)	9
MalI	GATC	1 cut(s)	259
MboI	GATC	1 cut(s)	257
MboII	GAAGA	1 cut(s)	257
MflI	RGATCY	1 cut(s)	257
MluCI	AATT	1 cut(s)	169
MnlI	CCTC	4 cut(s)	7, 32, 97, 190
Mph1103I	ATGCAT	1 cut(s)	76
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	222, 262
MvaI	CCWGG	1 cut(s)	222
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	243
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	151, 165
Psp1406I	AACGTT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SatI	GCNGC	2 cut(s)	150, 164
Sau3AI	GATC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	222, 262
SetI	ASST	3 cut(s)	12, 131, 239
SfuI	TTCGAA	1 cut(s)	243
Sse9I	AATT	1 cut(s)	169
SspMI	CTAG	2 cut(s)	62, 213
StyD4I	CCNGG	2 cut(s)	220, 260
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	243
TasI	AATT	1 cut(s)	169
TatI	WGTACW	1 cut(s)	180
TseI	GCWGC	2 cut(s)	149, 163
Van91I	CCANNNNNTGG	1 cut(s)	54
XspI	CTAG	2 cut(s)	62, 213
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.