Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Reverse (-)

29229695 .. 29230051

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCTTGTCACTTGTGCTCTTCACCCTCTCTTCTCTTCCGCAACCCCCAAACTCCCTCCCGCTCTCTCCCTTCTTCTTCTTCCCTGACTGATTTCCGACTCCTAAGCCTTGCAATTAACACCCACAGAGTCAGTTTTCCTTCACTGCAATTTCAGTCAAGAACCTCTCTGCAAATACACCATGTTTCTTTGCAAGACCCAGTTGCAGAAGAAGCCCAGAACTCCAAAGCTCCAGAAATTGGAAATATTCAGAGCCCAGATGGAAATTCCGGGTCTTTGTCGAAAAGCTATATCTGGGTCAATCCCAGCAACCCCAGAGCTTCACAGCTGCGGCACAAGTCCTACGATTCCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

119

Amino Acids

13.03

Weight (kDa)

9.58

Isoelectric Point (pI)

89.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	239
AccBSI	CCGCTC	1 cut(s)	63
AciI	CCGC	3 cut(s)	40, 61, 331
AcsI	RAATTY	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	4 cut(s)	230, 288, 320, 328
AluI	AGCT	4 cut(s)	230, 288, 320, 328
Alw21I	GWGCWC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	271
BisI	GCNGC	2 cut(s)	329, 332
BlsI	GCNGC	2 cut(s)	330, 333
Bme1390I	CCNGG	2 cut(s)	271, 352
BmrFI	CCNGG	2 cut(s)	271, 352
BmrI	ACTGGG	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	315
BseYI	CCCAGC	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	20, 257
BspACI	CCGC	3 cut(s)	40, 61, 331
BspQI	GCTCTTC	1 cut(s)	25
BsrBI	CCGCTC	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	352
Bst6I	CTCTTC	3 cut(s)	25, 36, 41
BstDEI	CTNAG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	2 cut(s)	269, 350
BstV1I	GCAGC	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	143
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	8 cut(s)	5, 108, 215, 230, 255, 288, 320, 328
CviKI_1	RGCY	8 cut(s)	5, 108, 215, 230, 255, 288, 320, 328
DdeI	CTNAG	1 cut(s)	104
Eam1104I	CTCTTC	3 cut(s)	25, 36, 41
EarI	CTCTTC	3 cut(s)	25, 36, 41
Eco24I	GRGCYC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	257
FaeI	CATG	1 cut(s)	185
FaiI	YATR	2 cut(s)	183, 291
FatI	CATG	1 cut(s)	181
FauI	CCCGC	1 cut(s)	68
Fnu4HI	GCNGC	2 cut(s)	329, 332
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	2 cut(s)	329, 332
GluI	GCNGC	2 cut(s)	329, 332
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	216
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	1 cut(s)	185
HinfI	GANTC	3 cut(s)	99, 129, 347
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	98, 252
Hpy188III	TCNNGA	2 cut(s)	159, 233
HpyAV	CCTTC	2 cut(s)	81, 150
HpyCH4V	TGCA	5 cut(s)	113, 148, 172, 193, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	185
LguI	GCTCTTC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	8
MbiI	CCGCTC	1 cut(s)	63
MboII	GAAGA	7 cut(s)	12, 23, 28, 66, 69, 72, 221
MhlI	GDGCHC	2 cut(s)	20, 257
MluCI	AATT	4 cut(s)	114, 149, 237, 265
MlyI	GAGTC	2 cut(s)	93, 138
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	3 cut(s)	37, 67, 175
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	271, 352
MvaI	CCWGG	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	212
NciI	CCSGG	1 cut(s)	271
NlaIII	CATG	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	330, 333
PleI	GAGTC	2 cut(s)	93, 137
PpsI	GAGTC	2 cut(s)	93, 137
Psp6I	CCWGG	1 cut(s)	350
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	328
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	329, 332
SchI	GAGTC	2 cut(s)	93, 138
ScrFI	CCNGG	2 cut(s)	271, 352
SduI	GDGCHC	2 cut(s)	20, 257
SetI	ASST	6 cut(s)	167, 232, 290, 322, 330, 356
Sse9I	AATT	4 cut(s)	114, 149, 237, 265
SsiI	CCGC	3 cut(s)	40, 61, 331
SspI	AATATT	1 cut(s)	247
StyD4I	CCNGG	2 cut(s)	269, 350
TaqI	TCGA	1 cut(s)	281
TasI	AATT	4 cut(s)	114, 149, 237, 265
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	8
TspRI	CASTG	1 cut(s)	150
Van91I	CCANNNNNTGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.